Ir. Agata Pijl
Laboratory AssistantMicrobial Ecology |
Research themes
Research expertiseMolecular techniques
Page last updated: 14-09-2020
Ir. Agata Pijl graduated as a biotechnology technician in 1992 at the Hogeschool Rotterdam e.o. After this she studied biology at WageningenUR and graduated in 1995. She started working at the NIOO in 2000 for the Department of Microbial Ecology and also in 2003 for the Department of Animal Ecology. Here work now involves all kind of moleculair techniques in the projects of Eiko Kuramae, Marcel Visser and Mark Zwart.
- Costa, O. Y. A., De Hollander, M., Pijl, A., Liu, B., & Kuramae, E. (2020). Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer. Microbiome, in press, [76]. https://doi.org/10.1186/s40168-020-00836-7
- Lourenço, K. S., Suleiman, A. K. A., Pijl, A., Cantarella, H., & Kuramae, E. (2020). Dynamics and resilience of soil mycobiome under multiple organic and inorganic pulse disturbances. Science of the Total Environment, 733(1 september), [139173]. https://doi.org/10.1016/j.scitotenv.2020.139173
- Costa, O. Y. A., Pijl, A., & Kuramae, E. (2020). Dynamics of active potential bacterial and fungal interactions in the assimilation of acidobacterial EPS in soil. Soil Biology & Biochemistry, 148. https://doi.org/10.1016/j.soilbio.2020.107916
- Costa, O. Y. A., Zerillo, M., Zühlke, D., Kielak, A. M., Pijl, A., Riedel, K., & Kuramae, E. (2020). Responses of Acidobacteria Granulicella sp. WH15 to high carbon revealed by integrated omics analyses. Microorganisms, 8(2), [244]. https://doi.org/10.3390/microorganisms8020244
- Laine, V. N., Verhagen, I., Mateman, A. C., Pijl, A., Williams, T. D., Gienapp, P., van Oers, K., & Visser, M. E. (2019). Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird. BMC Genomics, 20(1). https://doi.org/10.1186/s12864-019-6043-0
- Verhagen, I., Laine, V. N., Mateman, A. C., Pijl, A., de Wit, R., van Lith, B., Kamphuis, W., Viitaniemi, H. M., Williams, T. D., Caro, S. P., Meddle, S. L., Gienapp, P., van Oers, K., & Visser, M. E. (2019). Fine-tuning of seasonal timing of breeding is regulated downstream in the underlying neuro-endocrine system in a small songbird. Journal of Experimental Biology, 222, [jeb.202481]. https://doi.org/10.1242/jeb.202481
- Cassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2019). Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil. Environmental Microbiology, 21(4), 1241-1254. https://doi.org/10.1111/1462-2920.14557
- Lourenço, K. S., Dimitrov, M., Pijl, A. S., Soares, J. R., do Carmo, J. B., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2018). Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission. GCB Bioenergy, 10(9), 645-660. https://doi.org/10.1111/gcbb.12519
- Acker, P., Francesiaz, C., Béchet, A., Sadoul, N., Lessells, C. M., Pijl, A. S., & Besnard, A. (2018). Insights on dispersal and recruitment paradigms: sex- and age-dependent variations in a nomadic breeder. Oecologia, 186(1), 85-97. https://doi.org/10.1007/s00442-017-3972-7
- Lourenço, K. S., Cassman, N., Pijl, A. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2018). Nitrosospira sp. govern nitrous oxide emissions in a tropical soil amended with residues of bioenergy crop. Frontiers in Microbiology, 9, [674]. https://doi.org/10.3389/fmicb.2018.00674
- Suleiman, A. K. A., Lourenço, K. S., Pitombo, L., Mendes, L. W., Roesch, L. F. W., Pijl, A. S., do Carmo, J. B., Cantarella, H., & Kuramae, E. E. (2018). Recycling organic residues in agriculture impacts soil-borne microbial community structure, function and N2O emissions. Science of the Total Environment, 631-632, 1089-1099. https://doi.org/10.1016/j.scitotenv.2018.03.116
- Lourenço, K. S., Suleiman, A. K. A., Pijl, A. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2018). Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion. Microbiome, 6, [142]. https://doi.org/10.1186/s40168-018-0525-1
- Soares, J. R., Cassman, N., Kielak, A. M., Pijl, A. S., do Carmo, J. B., Lourenço, K. S., Laanbroek, H. J., Cantarella, H., & Kuramae, E. E. (2016). Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil. Scientific Reports, 6, [30349]. https://doi.org/10.1038/srep30349
- Derks, M., Smit, S., Salis, L., Schijlen, E., Bossers, A., Mateman, A. C., Pijl, A., de Ridder, D., Groenen, M., Visser, M. E., & Megens, H-J. (2015). The genome of the winter moth (Operophtera brumata) provides a genomic perspective on sexual dimorphism and phenology. Genome Biology and Evolution, 7(8), 2321-2332. https://doi.org/10.1093/gbe/evv145
- Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A., & Tsai, S. M. (2013). Acidobacterial community responses to agricultural management of soybean in Amazon forest soils. FEMS Microbiology Ecology, 83(3), 607-621. https://doi.org/10.1111/1574-6941.12018
- Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S., & Van Veen, J. A. (2013). Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics. Global Change Biology, 19(2), 621-636. https://doi.org/10.1111/gcb.12045
- Vos, M., Quince, C., Pijl, A. S., De Hollander, M., & Kowalchuk, G. A. (2012). A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity. PLoS One, 7(2), [e30600]. https://doi.org/10.1371/journal.pone.0030600
- Kuramae, E. E., Yergeau, E., Wong, L., Pijl, A. S., Van Veen, J. A., & Kowalchuk, G. A. (2012). Soil characteristics more strongly influence soil bacterial communities than land-use type. FEMS Microbiology Ecology, 79(1), 12-24. https://doi.org/10.1111/j.1574-6941.2011.01192.x
- Drigo, B., Pijl, A. S., Duyts, H., Kielak, A. M., Gamper, H. A., Houtekamer, M. J., Boschker, H. T. S., Bodelier, P. L. E., Whiteley, A. S., Van Veen, J. A., & Kowalchuk, G. A. (2010). Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2. Proceedings of the National Academy of Sciences of the United States of America, 107(24), 10938-10942. https://doi.org/10.1073/pnas.0912421107
- Kielak, A. M., Pijl, A. S., Van Veen, J. A., & Kowalchuk, G. A. (2009). Phylogenetic diversity of Acidobacteria in a former agricultural soil. ISME Journal, 3(3), 378-382. https://doi.org/10.1038/ismej.2008.113
- Kielak, A. M., Pijl, A. S., Van Veen, J. A., & Kowalchuk, G. A. (2008). Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field. FEMS Microbiology Ecology, 63(3), 372-382. https://doi.org/10.1111/j.1574-6941.2007.00428.x
- Van der Wal, A., Van Veen, J. A., Pijl, A. S., Summerbell, R. C., & De Boer, W. (2006). Constraints on development of fungal biomass and decomposition processes during restoration of arable sandy soils. Soil Biology & Biochemistry, 38(9), 2890-2902. https://doi.org/10.1016/j.soilbio.2006.04.046
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- Costa, O. Y. A. (Author/Maker), De Hollander, M. (Author/Maker), Pijl, A. (Author/Maker), Liu, B. [Developer], & Kuramae, E. [Developer]. (2020). Video Byte: Forest floor microbes produce tough biofilm breaker: Exploring Solutions from Nature. Digital or Visual Products, Research Square. https://www.youtube.com/watch?v=FJ8qBKkbik8&feature=youtu.be
