Samin Farhangi

Dr. Samin Farhangi

Bezoekadres

Droevendaalsesteeg 10
6708 PB Wageningen

+31 (0) 317 47 34 00

The Netherlands

Over

I am a bioinformatician and molecular biologist passionate about understanding the evolution and interactions between microbes and their hosts. My current research integrates experimental microbiology with bioinformatics-based analysis, focusing on microbiome detection and characterisation to support the development of sustainable management strategies across the life sciences and biotechnology sectors.

Biografie

My scientific journey began with an MSc and PhD in Virology, where I focused on the molecular detection and characterisation of  viruses. Motivated by a passion for data-driven discovery, I pursued an MSc in Bioinformatics at Wageningen University & Research (WUR), where I expanded my expertise to phylogenetic and molecular evolution through collaboration with the Biosystematics Group, and later to genomics as a postdoctoral researcher in the Animal Breeding Group at WUR.

At NIOO-KNAW, I work as a postdoctoral researcher in the Microbial Ecology Group within Dr. Mark Zwart team. My first project at NIOO explored the evolutionary dynamics of a baculovirus in wild insect populations. My current research focuses on the diversity and dynamics of the plant-associated microbiome in orchid tissue culture systems. By integrating molecular approaches with bioinformatics, I contribute to the development of green and sustainable strategies for microbial management.

CV

Employment

  • Present
    Postdoctoral Researcher, Microbial Ecology, NIOO-KNAW
  • 2024–2025
    Researcher, Microbial Ecology, NIOO-KNAW
  • 2021–2023
    Postdoctoral Researcher, Animal Breeding and Genomics Group, WUR
  • 2018–2021
    Assistant Lecturer and Researcher, Biosystematics Group, WUR
  • 2010–2015
    Assistant Professor, Plant Pathology Group, Iran

Education

  • 2015–2017
    M.Sc. Bioinformatics, WUR, The Netherlands
  • 2005–2010
    Ph.D Plant Virology, University of Tehran, Iran
  • 2001–2004
    M.Sc. Plant Pathology, University of Tehran, Iran

Publicaties

Belangrijkste publicaties

  • Genomics
    2025

    Comprehensive expression genome-wide association study of long non-coding RNAs in four porcine tissues

    Liyan Deng, Marta Gòdia, Martijn F.L. Derks, Barbara Harlizius, Samin Farhangi, Zhonglin Tang, ...
  • BMC Genomics
    2024

    Expression genome-wide association study identifies key regulatory variants enriched with metabolic and immune functions in four

    Samin Farhangi, Marta Gòdia, Martijn F.L. Derks, Barbara Harlizius, Bert Dibbits, ..., Martien A.M. Groenen
  • The Plant Journal
    2020

    Leucine‐rich repeat receptor‐like kinase II phylogenetics reveals five main clades throughout the plant kingdom

    Samin Farhangi, Ed D. L. Schmidt and Freek T. Bakker
  • Molecular Phylogenetics and Evolution
    2019

    Plastome based phylogenetics and younger crown node age in Pelargonium

    Sara J van de Kerke, Bikash Shrestha, Tracey A Ruhlman, Mao-Lun Weng, Robert K Jansen, ..., Samin Farhangi,...
  • Ecology and Evolution
    2022

    Structure and molecular evolution of the barcode fragment of cytochrome oxidase I (COI) in Macrocheles (Acari: Mesostigmata: Mac

    Najme Khakestani, Malihe Latifi, Esmaeil Babaeian, Wayne Knee, Samin Farhangi