Droevendaalsesteeg 10
6708 PB Wageningen
The Netherlands
Research assistant at the TE department.
Chemical analyses
Field and greenhouse experiments
Ciska started at NIOO in 2001 as a research assistant at the TE department. Since then she has worked within the department for various projects.
Being part of the chemical lab staff, her work consists of several chromatography method developments and analyzes, lab management and supervision of students.
Experienced in the following analysis techniques
HPLC-DAD Plant exudates - Organic Acids - Phenolics – flavonoids - Glucosinolates
HPLC-ECD Mono- di- and tri-saccharides – Iridoide glycosides – Glucosamine
GC-C-IRMS Analysis of 13C/12C ratio of PLFA’s (fatty acids)
UHPLC-MSMS ergosterol - Amino acids - metabolite screening - glucosamine - plant hormones
GC-FID PLFA’s and NLFA’s (Fatty Acids Methyl Esters)
In addition to chemical analyses, she also provides practical support in the field and greenhouse to the TE department.
"think like a proton and stay positive"
Intensive agricultural practices decrease aboveground and belowground biodiversity with an impact on ecosystem functioning. The planting of hedgerows has been advocated as a way to increase biodiversity in agricultural landscapes, but little is known about the effects of the adjacent land use on hedgerow biodiversity. Here, we show that the adjacent agricultural land use influences the composition, structure, and complexity of soil microbial communities underneath hedgerows that have been in place for more than hundred years. In the Maasheggen UNESCO Biosphere Reserve, we examined hedgerows adjacent to three land use types: low-intensity conservation grasslands, high-intensity production grasslands, and croplands. Soil samples were collected from both the center of the fields and underneath two adjacent hedgerows to analyze soil chemistry and microbial community composition, diversity, structure, and complexity. Our results show that hedgerow soils supported more complex and interconnected microbial communities than adjacent fields. Additionally, prokaryotic communities were highly responsive to land use, particularly to arable croplands, and prokaryote composition in hedgerows largely resembled that of the adjacent fields. In contrast, fungal communities consistently differed between hedgerows and adjacent fields, although hedgerows next to croplands hosted a fungal community that differed from hedgerows next to grasslands. We conclude that the community composition of prokaryotes in hedgerow soil was under strong control of adjacent field management, whereas fungal community composition was far less affected. Moreover, hedgerow soils harbored structurally more complex microbial communities than adjacent fields that were used for high-intensity agriculture. Further studies are needed to analyze costs and benefits of hedgerow soils for providing ecosystem services.
BACKGROUND: Soil microbiomes are increasingly acknowledged to affect plant functioning. Research in molecular model species Arabidopsis thaliana has given detailed insights of such plant-microbiome interactions. However, the circumstances under which natural A. thaliana plants have been studied so far might represent only a subset of A. thaliana's full ecological context and potential biotic diversity of its root-associated microbiome.
RESULTS: We collected A. thaliana root-associated soils from a secondary succession gradient covering 40 years of land abandonment. All field sites were situated on the same parent soil material and in the same climatic region. By sequencing the bacterial and fungal communities and soil abiotic analysis we discovered differences in both the biotic and abiotic composition of the root-associated soil of A. thaliana and these differences are in accordance with the successional class of the field sites. As the studied sites all have been under (former) agricultural use, and a climatic cline is absent, we were able to reveal a more complete variety of ecological contexts A. thaliana can appear and sustain in.
CONCLUSIONS: Our findings lead to the conclusion that although A. thaliana is considered a pioneer plant species and previously almost exclusively studied in early succession and disturbed sites, plants can successfully establish in soils which have experienced years of ecological development. Thereby, A. thaliana can be exposed to a much wider variation in soil ecological context than is currently presumed. This knowledge opens up new opportunities to enhance our understanding of causal plant-microbiome interactions as A. thaliana cannot only grow in contrasting soil biotic and abiotic conditions along a latitudinal gradient, but also when those conditions vary along a secondary succession gradient. Future research could give insights in important plant factors to grow in more ecologically complex later-secondary succession soils, which is an impending direction of our current agricultural systems.