6708 PB Wageningen
I have completed both my BSc and MSc Biology both at Wageningen University. In my BSc (organismal and developmental biology) I became more and more interested in developmental biology as well as the interplay with the local environment. With my MSc (gene regulation and molecular development) I deepened my knowledge on this subject and moved towards the plant biology world. Both my MSc thesis (carried out at Plant Developmental Biology, Wageningen University) and MSc internship (carried out at Estelle laboratory, University of California San Diego) trained my to become a critical and independent scientist with a passion for fundamental research.
After I finished my studies I got the opportunity to write my own PhD research proposal as part of the Experimental Plant Science graduate program. In this proposal I moved with my background in molecular plant biology towards the turbulent world of terrestrial ecology. Together with Prof. Wim van der Putten (Terrestrial Ecology, NIOO-knaw) and Dr. Viola Willemsen (Plant Developmental Biology, Wageningen University) I wrote a proposal about linking ecology and molecular biology through studying natural population of Arabidopsis thaliana during secondary soil succession. As of June 2018 I am carrying out the proposal as an PhD student part of both Terrestrial Ecology and Plant Developmental Biology. The project is extremely multidisciplinary ranging from soil chemistry and microbiome composition to root architecture studies and whole genome sequencing. It is amazing to work in both departments and experience much support and input to carry out this adventurous project!
PhD Project description
In spite of recent advances in molecular biology and ecology, we still do not understand mechanistically how plant life history strategies are shaped by environmental factors. Here I will study how plant-soil interactions influence adaptation of these strategies. My aim is to unravel how soil development during secondary succession influences the selection of plant life history strategies. I will study natural populations of Arabidopsis thaliana and how they are influenced by successional changes in biotic-abiotic soil conditions in a well-described time series of abandoned ex-arable fields. During secondary succession, the plant community shifts from pioneer to later succession species under influence of changes in both the abiotic and biotic composition of the soil. I will test the hypothesis that belowground changes contribute to adaptation of plant roots to their specific soils. Arabidopsis is a well-established molecular model plant and has many favorable characteristics. Studying sequence variation within this species will allow me to describe selection at the genetic level. Specific gene editing experiments will test and validate roles for root architecture in adaptation. In this research, I will integrate soil ecology and molecular plant biology studying genomes, expression patterns, plant-soil feedback effects and root architecture. These findings will provide fundamental knowledge on root traits of crops adapted to sustainable soil management in agriculture.
This project is a collaboration between Department of Terrestrial Ecology (NIOO-KNAW) and Plant Developmental Biology (Wageningen University) under the guidance of:
Prof. dr. ir. Wim van der Putten (Terrestrial Ecology - NIOO-KNAW)
Prof. dr. ir. Ben Scheres (Plant Developmental Biology - Wageningen University)
Dr. Viola Willemsen (Plant Developmental Biology - Wageningen University)
Root development is crucial for plant growth and therefore a key factor in plant perfor-mance and food production. Arabidopsis thaliana is the most commonly used system to study root system architecture (RSA). Growing plants on agar-based media has always been routine practice, but this approach poorly reflects the natural situation, which fact in recent years has led to a dramatic shift toward studying RSA in soil. Here, we directly compare RSA responses to agar-based medium (plates) and potting soil (rhizotrons) for a set of redundant loss-of-function plethora (plt) CRISPR mutants with variable degrees of secondary root defects. We demonstrate that plt3plt7 and plt3plt5plt7 plants, which produce only a handful of emerged secondary roots, can be distinguished from other genotypes based on both RSA shape and individual traits on plates and rhizotrons. However, in rhizotrons the secondary root density and the total contribution of the side root system to the RSA is increased in these two mutants, effectively rendering their phenotypes less distinct compared to WT. On the other hand, plt3, plt3plt5, and plt5plt7 mutants showed an opposite effect by having reduced secondary root density in rhizotrons. This leads us to believe that plate versus rhizotron responses are genotype dependent, and these differential responses were also observed in unrelated mutants short-root and scarecrow. Our study demonstrates that the type of growth system affects the RSA differently across genotypes, hence the optimal choice of growth conditions to analyze RSA phenotype is not predetermined.