Mattias de Hollander

Mattias de Hollander MSc

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Bio-informatician
Animal Ecology | Aquatic Ecology | Microbial Ecology | Terrestrial Ecology
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Visiting Address

Droevendaalsesteeg 10
6708 PB Wageningen

+31 (0) 317 47 34 00

The Netherlands

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About

Mattias has a Msc degree in Bioinformatics from the Wageningen University and is working as bioinformatician at the Netherlands Institute of Ecology since 2010.

Biography

Mattias contributed to the growth and development of the bioinformatics at the institute by introducing it and continues to professionalize it, making several web-services available, giving support and advice and organizing carpentry workshop to teach basic skills and develop analysis pipelines. He is an early adopter of the Snakemake workflow management system and has been developing pipelines with it since 2012 in combination with Bioconda, mostly in the metagenomics fields. He advocates the use and development of open-source software and reproducible research.

Research Expertise

Big data Bio-informatics Cloud computing Comparative genomics Data analysis Data management Genome annotation Genome binning Genomics Meta-analysis Metabolomics Metagenomics Metatranscriptomics Open code Open data Open science Python RNA expression Sequencing Snakemake Transcriptomics

CV

Employment

  • 2011–Present
    Bio-informatician @ NIOO-KNAW
  • 2010–2011
    Bioinformatician, Free University (VU) Amsterdam / Netherlands Institute of Ecology (NIOO-KNAW)

Education

  • 2008–2010
    MSc Bioinformatics, Wageningen University, the Netherlands
  • 2004–2008
    Bachelor of Applied Science (B AS), CUM LAUDE, BioInformatics, University of Applied Sciences (Hogeschool),Leiden

Projects & collaborations

Projects