Mattias de Hollander
Bio-informaticianAnimal EcologyAquatic EcologyMicrobial EcologyTerrestrial Ecology |
Research expertiseBioinformatics Cloud computing Python programming Sequence analysis
Page last updated: 10-07-2018
PROFESSIONAL APPOINTMENTS
| 06.2011 - present | Bioinformatician, Netherlands Institute of Ecology (NIOO-KNAW) |
| 12.2010 - 06.2011 | Bioinformatician, Free University (VU) Amsterdam / Netherlands Institute of Ecology (NIOO-KNAW) |
EDUCATION
| 2008 - 2010 | MSc Bioinformatics, Wageningen University, the Netherlands |
| 2004 - 2008 | Bachelor of Applied Science (B AS), CUM LAUDE, BioInformatics, University of Applied Sciences (Hogeschool),Leiden |
| 2003 - 2004 | Scheikundige Technologie/Bioproces Technologie, TU Delft |
| 1997 - 2003 | Diploma Voorbereidend Wetenschappelijk Onderwijs (VWO), Natuur en Techniek, Rijnlands Lyceum, Oegstgeest |
RESEARCH INTERESTS
- Perez Jaramillo, J. E., Carrion, V. J., De Hollander, M., & Raaijmakers, J. M. (2018). The wild side of plant microbiomes. Microbiome, 6(143). doi:10.1186/s40168-018-0519-z
- Ramirez, K. S., Knight, C. G., de Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, A.,... De Vries, F. T. (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3, 189-196. doi:10.1038/s41564-017-0062-x
- Dassen, S., Cortois, R., Martens, H., De Hollander, M., Kowalchuk, G. A., van der Putten, W. H., & De Deyn, G. B. (2017). Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity. Molecular Ecology, 26(15), 4085-4098. doi:10.1111/mec.14175
- Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A., & Kuramae, E. E. (2017). Successive DNA extractions improve characterization of soil microbial communities. PeerJ, 5, [e2915]. doi:10.7717/peerj.2915
- Hannula, S. E., Morriën, E., De Hollander, M., van der Putten, W. H., van Veen, J. A., & De Boer, W. (2017). Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture. ISME Journal, 11, 2294-2304. doi:10.1038/ismej.2017.90
- Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E., & van Veen, J. A. (2017). Methanogens predominate in natural corrosion protective layers on metal sheet piles. Scientific Reports, 7, [11899]. doi:10.1038/s41598-017-11244-7
- Lupatini, M., Korthals, G. W., De Hollander, M., Janssens, T. K. S., & Kuramae, E. E. (2017). Soil microbiome is more heterogeneous in organic than in conventional farming system. Frontiers in Microbiology, 7, [2064]. doi:10.3389/fmicb.2016.02064
- Mendes, L. W., Raaijmakers, J. M., De Hollander, M., Mendes, R., & Tsai, S. M. (2017). Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. ISME Journal, 2017(12), 212-224. doi:10.1038/ismej.2017.158
- Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M.,... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, [14349]. doi:10.1038/ncomms14349
- Perez Jaramillo, J. E., Carrion, V. J., Bosse, M., Ferrão, L. F. V., De Hollander, M., Garcia, A. A. F.,... Raaijmakers, J. M. (2017). Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits. ISME Journal, 11, 2244-2257. doi:10.1038/ismej.2017.85
- Van der Wal, A., Klein Gunnewiek, P. J. A., De Hollander, M., & De Boer, W. (2017). Fungal diversity and potential tree pathogens in decaying logs and stumps. Forest Ecology and Management, 406, 266-273. doi:10.1016/j.foreco.2017.08.018
- Yan, Y., Kuramae, E. E., De Hollander, M., Klinkhamer, P. G. L., & van Veen, J. A. (2017). Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere. ISME Journal, 11, 56-66. doi:10.1038/ismej.2016.108
- Cassman, N., Leite, M. F. A., Pan, Y., De Hollander, M., van Veen, J. A., & Kuramae, E. E. (2016). Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland. Scientific Reports, 6, [23680]. doi:10.1038/srep23680
- Pitombo, L., do Carmo, J. B., De Hollander, M., Rosetto, R., Lopez, M. V., Cantarella, H., & Kuramae, E. E. (2016). Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop. Global Change Biology Bioenergy, 8(5), 867-879. doi:10.1111/gcbb.12284
- Hol, G., De Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A., & van der Putten, W. (2015). Context dependency and saturating effects of loss of rare soil microbes on plant productivity. Frontiers in Plant Science, 6, [485]. doi:10.3389/fpls.2015.00485
- Mendes, L. M., Tsai, S. M., Navarrete, A. A., De Hollander, M., Van Veen, J. A., & Kuramae, E. E. (2015). Soil-borne microbiome: linking diversity to function. Microbial Ecology, 70(1), 255-265. doi:10.1007/s00248-014-0559-2
- Navarrete, A. A., Tsai, S. M., Mendes, L. W., Faust, K., De Hollander, M., Cassman, N.,... Kuramae, E. E. (2015). Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology, 24(10), 2433-2448. doi:10.1111/mec.13172
- Hiltemann, S., Mei, H., de Hollander, M., Palli, I., van der Spek, P., Jenster, G., & Stubbs, A. (2014). CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy: Technical Note. GigaScience, 3, [1]. doi:10.1186/2047-217X-3-1
- Pan, Y., Cassman, N., De Hollander, M., Mendes, L. W., Korevaar, H., Geerts, R. H. E. M.,... Kuramae, E. E. (2014). Impact of long term N, P, K and NPK fertilization on the composition and potential functions of bacterial community in grassland soil. FEMS Microbiology Ecology, 90(1), 195-205. doi:10.1111/1574-6941.12384
- Kuramae, E. E., Verbruggen, E., Hillekens, R. H. E., De Hollander, M., Röling, W. F. M., Van der Heijden, M. G. A., & Kowalchuk, G. A. (2013). Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing. PLoS One, 8(7), [e69973]. doi:10.1371/journal.pone.0069973
- Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Van der Heijden, M. G. A., Van den Berg, M., Van Straalen, N. M., & Kowalchuk, G. A. (2013). Structural and functional variation in soil fungal communities associated with litter bags containing maize. FEMS Microbiology Ecology, 84(3), 519-531. doi:10.1111/1574-6941.12080
- Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A., & Tsai, S. M. (2013). Acidobacterial community responses to agricultural management of soybean in Amazon forest soils. FEMS Microbiology Ecology, 83(3), 607-621. doi:10.1111/1574-6941.12018
- Verbruggen, E., Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Kiers, E. T., Roling, W. F. M.,... Van der Heijden, M. G. A. (2012). Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting. Applied and Environmental Microbiology, 78(20), 7384-7392. doi:10.1128/AEM.01372-12
- Vos, M., Quince, C., Pijl, A. S., De Hollander, M., & Kowalchuk, G. A. (2012). A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity. PLoS One, 7(2), [e30600]. doi:10.1371/journal.pone.0030600
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Contact
+31 (0)317 473 503
Droevendaalsesteeg 10
6708 PB Wageningen
+31 (0)317 47 34 00
Postbus 50
6700 AB Wageningen
