Mattias de Hollander
Bio-informaticianAnimal EcologyAquatic EcologyMicrobial EcologyTerrestrial Ecology |
Research expertiseBioinformatics Cloud computing Python programming Sequence analysis
Page last updated: 10-07-2018
PROFESSIONAL APPOINTMENTS
| 06.2011 - present | Bioinformatician, Netherlands Institute of Ecology (NIOO-KNAW) |
| 12.2010 - 06.2011 | Bioinformatician, Free University (VU) Amsterdam / Netherlands Institute of Ecology (NIOO-KNAW) |
EDUCATION
| 2008 - 2010 | MSc Bioinformatics, Wageningen University, the Netherlands |
| 2004 - 2008 | Bachelor of Applied Science (B AS), CUM LAUDE, BioInformatics, University of Applied Sciences (Hogeschool),Leiden |
| 2003 - 2004 | Scheikundige Technologie/Bioproces Technologie, TU Delft |
| 1997 - 2003 | Diploma Voorbereidend Wetenschappelijk Onderwijs (VWO), Natuur en Techniek, Rijnlands Lyceum, Oegstgeest |
RESEARCH INTERESTS
- Perez, J. E., Carrion, V. J., De Hollander, M., & Raaijmakers, J. M. (2018). The wild side of plant microbiomes. Microbiome, 6(143). doi:10.1186/s40168-018-0519-z
- Ramirez, K. S., Knight, C. G., de Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, A.,... De Vries, F. T. (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3, 189-196. doi:10.1038/s41564-017-0062-x
- Dassen, S., Cortois, R., Martens, H., De Hollander, M., Kowalchuk, G. A., van der Putten, W. H., & De Deyn, G. B. (2017). Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity. Molecular Ecology, 26(15), 4085-4098. doi:10.1111/mec.14175
- Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A., & Kuramae, E. E. (2017). Successive DNA extractions improve characterization of soil microbial communities. PeerJ, 5, [e2915]. doi:10.7717/peerj.2915
- Hannula, S. E., Morriën, E., De Hollander, M., van der Putten, W. H., van Veen, J. A., & De Boer, W. (2017). Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture. ISME Journal, 11, 2294-2304. doi:10.1038/ismej.2017.90
- Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E., & van Veen, J. A. (2017). Methanogens predominate in natural corrosion protective layers on metal sheet piles. Scientific Reports, 7, [11899]. doi:10.1038/s41598-017-11244-7
- Lupatini, M., Korthals, G. W., De Hollander, M., Janssens, T. K. S., & Kuramae, E. E. (2017). Soil microbiome is more heterogeneous in organic than in conventional farming system. Frontiers in Microbiology, 7, [2064]. doi:10.3389/fmicb.2016.02064
- Mendes, L. W., Raaijmakers, J. M., De Hollander, M., Mendes, R., & Tsai, S. M. (2017). Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. ISME Journal, 2017(12), 212-224. doi:10.1038/ismej.2017.158
- Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M.,... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, [14349]. doi:10.1038/ncomms14349
- Perez, J. E., Carrion, V. J., Bosse, M., Ferrão, L. F. V., De Hollander, M., Garcia, A. A. F.,... Raaijmakers, J. M. (2017). Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits. ISME Journal, 11, 2244-2257. doi:10.1038/ismej.2017.85
- Van der Wal, A., Klein Gunnewiek, P. J. A., De Hollander, M., & De Boer, W. (2017). Fungal diversity and potential tree pathogens in decaying logs and stumps. Forest Ecology and Management, 406, 266-273. doi:10.1016/j.foreco.2017.08.018
- Yan, Y., Kuramae, E. E., De Hollander, M., Klinkhamer, P. G. L., & van Veen, J. A. (2017). Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere. ISME Journal, 11, 56-66. doi:10.1038/ismej.2016.108
- Cassman, N., Leite, M. F. A., Pan, Y., De Hollander, M., van Veen, J. A., & Kuramae, E. E. (2016). Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland. Scientific Reports, 6, [23680]. doi:10.1038/srep23680
- Pitombo, L., do Carmo, J. B., De Hollander, M., Rosetto, R., Lopez, M. V., Cantarella, H., & Kuramae, E. E. (2016). Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop. Global Change Biology Bioenergy, 8(5), 867-879. doi:10.1111/gcbb.12284
- Hol, G., De Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A., & van der Putten, W. (2015). Context dependency and saturating effects of loss of rare soil microbes on plant productivity. Frontiers in Plant Science, 6, [485]. doi:10.3389/fpls.2015.00485
- Mendes, L. M., Tsai, S. M., Navarrete, A. A., De Hollander, M., Van Veen, J. A., & Kuramae, E. E. (2015). Soil-borne microbiome: linking diversity to function. Microbial Ecology, 70(1), 255-265. doi:10.1007/s00248-014-0559-2
- Navarrete, A. A., Tsai, S. M., Mendes, L. W., Faust, K., De Hollander, M., Cassman, N.,... Kuramae, E. E. (2015). Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology, 24(10), 2433-2448. doi:10.1111/mec.13172
- Hiltemann, S., Mei, H., de Hollander, M., Palli, I., van der Spek, P., Jenster, G., & Stubbs, A. (2014). CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy: Technical Note. GigaScience, 3, [1]. doi:10.1186/2047-217X-3-1
- Pan, Y., Cassman, N., De Hollander, M., Mendes, L. W., Korevaar, H., Geerts, R. H. E. M.,... Kuramae, E. E. (2014). Impact of long term N, P, K and NPK fertilization on the composition and potential functions of bacterial community in grassland soil. FEMS Microbiology Ecology, 90(1), 195-205. doi:10.1111/1574-6941.12384
- Kuramae, E. E., Verbruggen, E., Hillekens, R. H. E., De Hollander, M., Röling, W. F. M., Van der Heijden, M. G. A., & Kowalchuk, G. A. (2013). Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing. PLoS One, 8(7), [e69973]. doi:10.1371/journal.pone.0069973
- Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Van der Heijden, M. G. A., Van den Berg, M., Van Straalen, N. M., & Kowalchuk, G. A. (2013). Structural and functional variation in soil fungal communities associated with litter bags containing maize. FEMS Microbiology Ecology, 84(3), 519-531. doi:10.1111/1574-6941.12080
- Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A., & Tsai, S. M. (2013). Acidobacterial community responses to agricultural management of soybean in Amazon forest soils. FEMS Microbiology Ecology, 83(3), 607-621. doi:10.1111/1574-6941.12018
- Verbruggen, E., Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Kiers, E. T., Roling, W. F. M.,... Van der Heijden, M. G. A. (2012). Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting. Applied and Environmental Microbiology, 78(20), 7384-7392. doi:10.1128/AEM.01372-12
- Vos, M., Quince, C., Pijl, A. S., De Hollander, M., & Kowalchuk, G. A. (2012). A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity. PLoS One, 7(2), [e30600]. doi:10.1371/journal.pone.0030600
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Contact
+31 (0)317 473 503
Droevendaalsesteeg 10
6708 PB Wageningen
+31 (0)317 47 34 00
Postbus 50
6700 AB Wageningen
