2020
- Hipsey, M. R., Gal, G., Arhonditsis, G. B., Carey, C. C., Elliott, J. A., Frassl, M. A., Janse, J. H., de Mora, L., & Robson, B. J. (2020). A system of metrics for the assessment and improvement of aquatic ecosystem models. Environmental Modelling and Software, 128. https://doi.org/10.1016/j.envsoft.2020.104697
- Chang, M., Teurlincx, S., Janse, J. H., Paerl, H. W., Mooij, W. M., & Janssen, A. B. G. (2020). Exploring How Cyanobacterial Traits Affect Nutrient Loading Thresholds in Shallow Lakes: A Modelling Approach. Water, 12(9), [2467]. https://doi.org/10.3390/w12092467
2019
- Chang, M., Teurlincx, S., DeAngelis, D. L., Janse, J. H., Troost, T. A., van Wijk, D., Mooij, W. M., & Janssen, A. B. G. (2019). A generically parameterized model of Lake eutrophication (GPLake) that links field-, lab- and model-based knowledge. Science of the Total Environment, 695, [133887]. https://doi.org/10.1016/j.scitotenv.2019.133887
- Teurlincx, S., van Wijk, D., Mooij, W. M., Kuiper, J. J., Huttunen, I., Brederveld, R. J., Chang, M., Janse, J. H., Woodward, B., Hu, F., & Janssen, A. B. G. (2019). A perspective on water quality in connected systems: modelling feedbacks between up- and downstream transport and local ecologic. Current Opinion in Environmental Sustainability, 40, 21-29. https://doi.org/10.1016/j.cosust.2019.07.004
- Janssen, A. BG., Janse, J. H., Beusen, A. HW., Chang, M., Harrison, J. A., Huttunen, I., Kong, X., Rost, J., Teurlincx, S., Troost, T. A., van Wijk, D., & Mooij, W. M. (2019). How to model algal blooms in any lake on earth. Current Opinion in Environmental Sustainability, 36, 1-10. https://doi.org/10.1016/j.cosust.2018.09.001
- Mooij, W. M., van Wijk, D., Beusen, A. HW., Brederveld, R. J., Chang, M., Cobben, M. M. P., DeAngelis, D. L., Downing, A. S., Green, P., Gsell, A. S., Huttunen, I., Janse, J. H., Janssen, A. B. G., Hengeveld, G. M., Kong, X., Kramer, L., Kuiper, J. J., Langan, S. J., Nolet, B. A.,... Teurlincx, S. (2019). Modeling water quality in the Anthropocene: Directions for the next-generation aquatic ecosystem models. Current Opinion in Environmental Sustainability, 36(February), 85-95. https://doi.org/10.1016/j.cosust.2018.10.012
- Gillefalk, M., Mooij, W. M., Teurlincx, S., Janssen, A. B. G., Janse, J. H., Chang, M., Köhler, J., & Hilt, S. (2019). Modelling induced bank filtration effects on freshwater ecosystems to ensure sustainable drinking water production. Water Research, 157, 19-29. https://doi.org/10.1016/j.watres.2019.03.048
- van Gerven, L. P. A., Kuiper, J. J., Mooij, W. M., Janse, J. H., Paerl, H. W., & de Klein, J. J. M. (2019). Nitrogen fixation does not axiomatically lead to phosphorus limitation in aquatic ecosystems. Oikos, 128(4), 563-570. https://doi.org/10.1111/oik.05246
- Janssen, A. B. G., Teurlincx, S., Beusen, A. HW., Huijbregts, M. A. J., Rost, J., Schipper, A., Seelen, L., Mooij, W. M., & Janse, J. H. (2019). PCLake +: a process-based ecological model to assess the trophic state of stratified and non-stratified freshwater lakes worldwide. Ecological Modelling, 396(March), 23-32. https://doi.org/10.1016/j.ecolmodel.2019.01.006
- Janssen, A. B. G., van Wijk, D., van Gerven, L. P. A., Bakker, E. S., Brederveld, R. J., DeAngelis, D. L., Janse, J. H., & Mooij, W. M. (2019). Success of lake restoration depends on spatial aspects of nutrient loading and hydrology. Science of the Total Environment, 679(20 August 2019), 248-259. https://doi.org/10.1016/j.scitotenv.2019.04.443
- Janse, J. H., van Dam, A. A., Hes, E. M. A., de Klein, J. J. M., Finlayson, C. M., Janssen, A. B. G., van Wijk, D., Mooij, W. M., & Verhoeven, J. T. A. (2019). Towards a global model for wetlands ecosystem services. Current Opinion in Environmental Sustainability, 36, 11-19. https://doi.org/10.1016/j.cosust.2018.09.002
2018
- Kim, H., Rosa, I. M. D., Alkemade, R., Leadley, P., Hurtt, G., Popp, A., van Vuuren, D. P., Anthoni, P., Arneth, A., Baisero, D., Caton, E., Chaplin-Kramer, R., Chini, L., De Palma, A., Di Fulvio, F., Di Marco, M., Espinoza, F., Ferrier, S., Fujimori, S.,... Pereira, H. M. (2018). A protocol for an intercomparison of biodiversity and ecosystem services models using harmonized land-use and climate scenarios. Geoscientific Model Development, 11(11), 4537-4562. https://doi.org/10.5194/gmd-11-4537-2018
- Hilt, S., Alirangues Nuñez, M. M., Bakker, E. S., Blindow, I., Davidson, T. A., Gillefalk, M., Hansson, L-A., Janse, J. H., Janssen, A. B. G., Jeppesen, E., Kabus, T., Kelly, A., Köhler, J., Lauridsen, T. L., Mooij, W. M., Noordhuis, R., Phillips, G., Rücker, J., Schuster, H-H.,... Sayer, C. D. (2018). Response of Submerged Macrophyte Communities to External and Internal Restoration Measures in North Temperate Shallow Lakes. Frontiers in Plant Science, 9, [194]. https://doi.org/10.3389/fpls.2018.00194
2017
- Van Gerven, L. P. A., Kuiper, J. J., Janse, J. H., Janssen, A. B. G., Jeuken, M., Mooij, W. M., & de Klein, J. J. M. (2017). How regime shifts in connected aquatic ecosystems are affected by the typical downstream increase of water flow. Ecosystems, 20(4), 733-744. https://doi.org/10.1007/s10021-016-0061-4
- Kong, X., He, Q., Yang, B., He, W., Xu, F., Janssen, A. B. G., Kuiper, J. J., Van Gerven, L. P. A., Qin, N., Jiang, Y., Liu, W., Yang, C., Bai, Z., Zhang, M., Kong, F., Janse, J. H., & Mooij, W. M. (2017). Hydrological regulation drives regime shifts: evidence from paleolimnology and ecosystem modeling of a large shallow Chinese lake. Global Change Biology, 23(2), 737-754. https://doi.org/10.1111/gcb.13416
- Boelee, E., Janse, J., Le Gal, A., Kok, M., Alkemade, R., & Ligtvoet, W. (2017). Overcoming water challenges through nature-based solutions. Water Policy, 19(5), 820-836. https://doi.org/10.2166/wp.2017.105
- Janssen, A. B. G., de Jager, V. C. L., Janse, J. H., Kong, X., Liu, S., Ye, W. M., & Mooij, W. M. (2017). Spatial identification of critical nutrient loads of large shallow lakes: Implications for Lake Taihu (China). Water Research, 119, 276-287. https://doi.org/10.1016/j.watres.2017.04.045
2016
- Roligheid, J., Jeppesen, E., Søndergaard, M., Janse, J. H., Mooij, W. M., & Trolle, D. (2016). Climate Change Will Make Recovery from Eutrophication More Difficult in Shallow Danish Lake Søbygaard. Water, 8(10). https://doi.org/10.3390/w8100459
- Hu, F., Bolding, K., Bruggeman, J., Jeppesen, E., Flindt, M. R., van Gerven, L., Janse, J. H., Janssen, A. B. G., Kuiper, J. J., Mooij, W. M., & Trolle, D. (2016). FABM-PCLake - linking aquatic ecology with hydrodynamics: Model description paper. Geoscientific Model Development, 9(6), 2271-2278. https://doi.org/10.5194/gmd-9-2271-2016, https://doi.org/10.5194/gmd-2015-260
2015
- Van Gerven, L., Brederveld, R., de Klein, J. J. M., DeAngelis, D. L., Downing, A., Faber, M., Gerla, D. J., 't Hoen, J., Janse, J., Janssen, A., Jeuken, M., Kooi, B. W., Kuiper, J., Lischke, B., Liu, S., Petzoldt, T., Schep, S. A., Teurlincx, S., Thiange, C.,... Mooij, W. (2015). Advantages of concurrent use of multiple software frameworks in water quality modelling using a database approach. Fundamental and Applied Limnology, 186(1-2), 5-20. https://doi.org/10.1127/fal/2015/0631
- Janssen, A. B. G., Arhonditsis, G. B., Beusen, A., Bolding, K., Bruce, L., Bruggeman, J., Couture, R-M., Downing, A. S., Alex Elliott, J., Frassl, M. A., Gal, G., Gerla, D. J., Hipsey, M. R., Hu, F., Ives, S. C., Janse, J. H., Jeppesen, E., Jöhnk, K. D., Kneis, D.,... Mooij, W. M. (2015). Exploring, exploiting and evolving diversity of aquatic ecosystem models: a community perspective. Aquatic Ecology, 49(4), 513-548. https://doi.org/10.1007/s10452-015-9544-1
- Kuiper, J. J., van Altena, C., de Ruiter, P. C., Van Gerven, L. P. A., Janse, J. H., & Mooij, W. M. (2015). Food-web stability signals critical transitions in temperate shallow lakes. Nature Communications, 6, [7727]. https://doi.org/10.1038/ncomms8727
- Janse, J. H., Kuiper, J. J., Weijters, M. J., Westerbeek, E. P., Jeuken, M. H. J. L., Bakkenes, M., Alkemade, R., Mooij, W. M., & Verhoeven, J. T. A. (2015). GLOBIO-Aquatic, a global model of human impact on the biodiversity of inland aquatic ecosystems. Environmental Science & Policy, 48(0), 99-114. https://doi.org/10.1016/j.envsci.2014.12.007
2014
- Trolle, D., Elliott, J. A., Mooij, W. M., Janse, J. H., Bolding, K., Hamilton, D. P., & Jeppesen, E. (2014). Advancing projections of phytoplankton responses to climate change through ensemble modelling. Environmental Modelling and Software, 61, 371-379. https://doi.org/10.1016/j.envsoft.2014.01.032
- Janssen, A. B. G., Teurlincx, S., An, S. Q., Janse, J. H., Paer, H. W., & Mooij, W. M. (2014). Alternative stable states in large shallow lakes? Journal of Great Lakes Research, 40(4), 813-826. https://doi.org/10.1016/j.jglr.2014.09.019
- Downing, A. S., van Nes, E. H., Balirwa, J. S., Beuving, J., Bwathondi, P. O. J., Chapman, L. J., Cornelissen, I. J. M., Cowx, I. G., Goudswaard, K. P. C., Hecky, R. E., Janse, J. H., Janssen, A. B. G., Kaufman, L., Kishe-Machumu, M. A., Kolding, J., Ligtvoet, W., Mbabazi, D., Medard, M., Mkumbo, O. C.,... Mooij, W. M. (2014). Coupled human and natural system dynamics as key to the sustainability of Lake Victoria’s ecosystem services. Ecology and Society, 19(4), [31]. https://doi.org/10.5751/ES-06965-190431
- Nielsen, A., Trolle, D., Bjerring, R., Sondergaard, M., Olesen, J. E., Janse, J. H., Mooij, W. M., & Jeppesen, E. (2014). Effects of climate and nutrient load on the water quality of shallow lakes assessed through ensemble runs by PCLake. Ecological Applications, 24(8), 1926-1944. https://doi.org/10.1890/13-0790.1
- Lischke, B., Hilt, S., Janse, J. H., Kuiper, J. J., Mehner, T., Mooij, W. M., & Gaedke, U. (2014). Enhanced Input of Terrestrial Particulate Organic Matter Reduces the Resilience of the Clear-Water State of Shallow Lakes: A Model Study. Ecosystems, 17(4), 616-626. https://doi.org/10.1007/s10021-014-9747-7
- Sachse, R., Petzoldt, T., Blumstock, M., Moreira, S., Paetzig, M., Ruecker, J., Janse, J. H., Mooij, W. M., & Hilt, S. (2014). Extending one-dimensional models for deep lakes to simulate the impact of submerged macrophytes on water quality. Environmental Modelling and Software, 61, 410-423. https://doi.org/10.1016/j.envsoft.2014.05.023
- Mooij, W. M., Brederveld, R. J., de Klein, J. J. M., DeAngelis, D. L., Downing, A., Faber, M., Gerla, D. J., Hipsey, M. R., 't Hoen, J., Janse, J. H., Janssen, A. B. G., Jeuken, M., Kooi, B. W., Lischke, B., Petzoldt, T., Postma, L., Schep, S. A., Scholten, H., Teurlincx, S.,... Kuiper, J. J. (2014). Serving many at once: How a database approach can create unity in dynamical ecosystem modelling. Environmental Modelling and Software, 61(November), 266-273. https://doi.org/10.1016/j.envsoft.2014.04.004
- Kuiper, J. J., Janse, J. H., Teurlincx, S., Verhoeven, J. T. A., & Alkemade, R. (2014). The impact of river regulation on the biodiversity intactness of floodplain wetlands. Wetlands Ecology and Management, 22(6), 647-658. https://doi.org/10.1007/s11273-014-9360-8
2013
- Downing, A. S., Van Nes, E. H., Janse, J. H., Witte, F., Cornelissen, I. J. M., Scheffer, M., & Mooij, W. M. (2013). Assembling the pieces of Lake Victoria's many food webs: Reply to Kolding. Ecological Applications, 23(3), 671-675. https://doi.org/10.1890/12-1418.1
2012
- Trolle, D., Hamilton, D. P., Hipsey, M. R., Bolding, K., Bruggeman, J., Mooij, W. M., Janse, J. H., Nielsen, A., Jeppesen, E., Elliot, J. A., Makler-Pick, V., Petzoldt, T., Rinke, K., Flindt, M. R., Arhonditsis, G., Gal, G., Bjerring, R., Tominaga, K., 't Hoen, J.,... Hanson, P. C. (2012). A community-based framework for aquatic ecosystem models. Hydrobiologia, 683(1), 25-34. https://doi.org/10.1007/s10750-011-0957-0
- Downing, A. S., Van Nes, E. H., Janse, J. H., Witte, F., Cornelissen, I. J. M., Scheffer, M., & Mooij, W. M. (2012). Collapse and reorganization of a food web of Mwanza Gulf, Lake Victoria. Ecological Applications, 22(1), 229-239. https://doi.org/10.1890/11-0941.1
2010
- Prokopkin, I., Mooij, W. M., Janse, J. H., & Degermendzhy, A. G. (2010). A general one-dimensional vertical ecosystem model of Lake Shira (Russia, Khakasia): description, parametrization and analysis. Aquatic Ecology, 44(3), 585-618. https://doi.org/10.1007/s10452-010-9326-8
- Mooij, W. M., Trolle, D., Jeppesen, E., Arhonditsis, G., Belolipetsky, P., Chitamwebwa, D. B. R., Degermendzhy, A. G., DeAngelis, D. L., De Senerpont Domis, L. N., Downing, A. S., Elliott, J. A., Fragoso Jr., C. R., Gaedke, U., Genova, S. N., Gulati, R. D., Håkanson, L., Hamilton, D. P., Hipsey, M. R., ‘t Hoen, P. J.,... Janse, J. H. (2010). Challenges and opportunities for integrating lake ecosystem modelling approaches. Aquatic Ecology, 44(3), 633-667. https://doi.org/10.1007/s10452-010-9339-3
- Janse, J. H., Scheffer, M., Lijklema, L., Van Liere, L., Sloot, J. S., & Mooij, W. M. (2010). Estimating the critical phosphorus loading of shallow lakes with the ecosystem model PCLake: Sensitivity, calibration and uncertainty. Ecological Modelling, 221(4), 654-665. https://doi.org/10.1016/j.ecolmodel.2009.07.023
- Degermendzhy, A. G., Zadereev, E. S., Rogozin, D. Y., Prokopkin, I., Barkhatov, Y. V., Tolomeev, A., Khromechek, E. B., Janse, J. H., Mooij, W. M., & Gulati, R. D. (2010). Vertical stratification of physical, chemical and biological components in two saline lakes Shira and Shunet (South Siberia, Russia). Aquatic Ecology, 44(3), 619-632. https://doi.org/10.1007/s10452-010-9336-6
2009
- Mooij, W. M., De Senerpont Domis, L. N., & Janse, J. H. (2009). Linking species- and ecosystem-level impacts of climate change in lakes with a complex and a minimal model. Ecological Modelling, 220(21), 3011-3020. https://doi.org/10.1016/j.ecolmodel.2009.02.003
2008
- Janse, J. H., De Senerpont Domis, L. N., Scheffer, M., Lijklema, L., Klinge, M., Mooij, W. M., & Van Liere, L. (2008). Critical phosphorus loading of different types of shallow lakes and the consequences for management estimated with the ecosystem model PCLake. Limnologica, 38(3-4), 203-219. https://doi.org/10.1016/j.limno.2008.06.001
- Sollie, S., Janse, J. H., Mooij, W. M., Coops, H., & Verhoeven, J. T. A. (2008). The Contribution of Marsh Zones to Water Quality in Dutch Shallow Lakes: A Modeling Study. Environmental Management, 42(6), 1002-1016. https://doi.org/10.1007/s00267-008-9121-7
2007
- Mooij, W. M., Janse, J. H., De Senerpont Domis, L. N., Hülsmann, S., & Ibelings, B. W. (2007). Predicting the effect of climate change on temperate shallow lakes with the ecosystem model PCLake. Hydrobiologia, 584, 443-454. https://doi.org/10.1007/s10750-007-0600-2
2006
- De Meester, L., Declerck, S., Janse, J. H., Dagevos, J. J., Portielje, R., Lammens, E., Jeppesen, E., Lauridsen, T., Schwenk, K., Muylaert, K., van der Gucht, K., Vyverman, W., Zwart, G., van Hannen, E., van Puijenbroek, P., Conde-Porcuna, J-M., Sanchez-Castillo, P., Vandekerkhove, J., & Brendonck, L. (2006). Biodiversity in European shallow lakes: a multilevel-multifactorial field study. In R. Bobbink, B. Beltman, J. T. A. Verhoeven, & D. F. Whigham [Eds.], Wetlands: Functioning, Biodiversity Conservation, and Restoration (Vol. 191, pp. 149-167). (Ecological Studies-Analysis and Synthesis). Springer Verlag GmbH. https://rd.springer.com/chapter/10.1007/978-3-540-33189-6_7
2004
- De Boer, W., Leveau, J. H. J., Kowalchuk, G. A., Klein Gunnewiek, P. J. A., Abeln, E. C. A., Figge, M. J., Sjollema, K., Janse, J. H., & Van Veen, J. A. (2004). Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae. International Journal of Systematic and Evolutionary Microbiology, 54, 857-864. https://doi.org/10.1099/ijs.0.02920-0
1998
- Janse, J. H., Van Donk, E., & Aldenberg, T. (1998). A model study on the stability of the macrophyte-dominated state as affected by biological factors. Water Research, 32(9), 2696-2706. https://doi.org/10.1016/S0043-1354(98)00049-9
- De Boer, W., Klein Gunnewiek, P. J. A., Lafeber, P., Janse, J. H., Spit, B. E., & Woldendorp, J. W. (1998). Anti-fungal properties of chitinolytic dune soil bacteria. Soil Biology & Biochemistry, 30(2), 193-203. https://doi.org/10.1016/S0038-0717(97)00100-4
1995
- Janse, J. H., Van Donk, E., & Gulati, R. D. (1995). Modelling nutrient cycles in relation to food web structure in a biomanipulated shallow lake. Netherlands Journal of Aquatic Ecology, 29, 67-79. https://doi.org/10.1007/BF02061790
1992
- Van Liere, L., & Janse, J. H. (1992). Restoration and Resilience to Recovery of the Lake Loosdrecht Ecosystem in Relation to Its Phosphorus Flow. Hydrobiologia, 233(1-3), 95-104. https://doi.org/10.1007/BF00016099
2013
- Schep, S. A., Janse, J. H., Van Gerven, L. P. A., Kuiper, J., Janssen, A. B. G., Mooij, W. M., & von Meijenfeldt, N. (2013). Impulse aan ecologische modellen PCLake en PCDITCH. Nieuwsbrief PCLake en PCDitch, (1). http://www.stowa.nl/Upload/nieuwsbriefPClakeditchnr1a.pdf
- Kuiper, J. J., Van Gerven, L. P. A., Mooij, W. M., Janse, J. H., Brederveld, R. J., von Meijdenfeldt, N., & Schep, S. A. (2013). Verbetering PCLake en PCDITCH. Nieuwsbrief PCLake en PCDitch, (2). http://www.stowa.nl/Upload/onderzoek_projecten/PCLake/Nieuwsbrief%20no2_PCLake-PCDitch.pdf
