Publications

Recent scientific publications (2014 - )

For more information, please contact the NIOO library

• Geisen, S., Kostenko, O., Cnossen, M. C., ten Hooven, F. C., Vreš, B., & van Der Putten, W. H. (2017). Seed and root endophytic fungi in a range expanding and a related plant species. Frontiers in Microbiology, 8. DOI: doi:10.3389/fmicb.2017.01645
• Dokter, A. M., van Loon, E. E., Fokkema, W., Lameris, T. K., Nolet, B. A., & van der Jeugd, H. P. (2017). Analyzing time-ordered event data with missed observations. Ecology and Evolution, n/a-n/a. DOI: doi:10.1002/ece3.3281
• Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E., & van Veen, J. A. (2017). Methanogens predominate in natural corrosion protective layers on metal sheet piles. Scientific Reports, in press.
• Van der Wal, A., Klein Gunnewiek, P. J. A., De Hollander, M., & De Boer, W. (2017). Fungal diversity and potential tree pathogens in decaying logs and stumps. Forest Ecology and Management, in press.
• Cobben, M. M. P., & Van Noordwijk, A. J. (2017). Consequences of the genetic treshold model for observing partial migration under climate change scenarios. Ecology and Evolution, in press.
• Sarneel, J. M., & Veen, G. F. (2017). Legacy effects of altered flooding regimes on decomposition in a boreal floodplain. Plant and Soil, in press.
• Grutters, B. M. C., Aben, R. C., Kosten, S., & Bakker, E. S. (2017). Impact of native and non-native aquatic plants on methane emission and phytoplankton growth. Aquatic Invasions, in press.
• Wood, K. A., Nuijten, R. J. M., Newth, J. L., Haitjema, T., Vangeluwe, D., Ionnidis, P.,... Rees, E. C. (2017). Apparent survival of an Arctic breeding migratory bird over 44 years of fluctuating population size. Ibis, in press. DOI: doi:10.1111/ibi.12521
• Wang, M., Bezemer, T. M. B., van der Putten, W. H., Brinkman, E. P., & Biere, A. (2017). Plant responses to variable timing of aboveground clipping and belowground herbivory depend on plant age. Journal of Plant Ecology, in press.
• Fei, M., Harvey, J. A., Yin, Y., & Gols, R. (2017). Oviposition Preference for Young Plants by the Large Cabbage Butterfly. Journal of Chemical Ecology, 43(6), 617-629. DOI: doi:10.1007/s10886-017-0853-9
• Nandini, S., Sarma, S. S. S., & Gulati, R. D. (2017). A Seasonal Study Reveals the Occurrence of Exotic Rotifers, the River Antigua, Veracruz, Close to the Gulf of Mexico. River Research and Applications, 33(6), 970-982. DOI: doi:10.1002/rra.3140
• Whigham, D. F., Walker, C. M., Maurer, J., King, R. S., Hauser, W., Baird, S.,... Neale, P. (2017). Watershed influences on the structure and function of riparian wetlands associated with headwater streams - Kenai Peninsula, Alaska. Science of the Total Environment, 599, 124-134. DOI: doi:10.1016/j.scitotenv.2017.03.290
• Salvador, R. B., Van der Jeugd, H., & Tomotani, B. M. (2017). Taxonomy of the European Pied Flycatcher Ficedula hypoleuca (Aves: Muscicapidae). Zootaxa, 4291(1), 171-182. DOI: doi:10.11646/zootaxa.4291.1.10
• Hiltemann, S., Mei, H., de Hollander, M., Palli, I., van der Spek, P., Jenster, G., & Stubbs, A. (2014). CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy: Technical Note. 3, [1]. DOI: doi:10.1186/2047-217X-3-1
• Brinkman, E. P., Raaijmakers, C., De Boer, W., & van der Putten, W. H. (2017). Changing soil legacies to direct restoration of plant communities. AoB PLANTS, in press.
• Nandini, S., Miracle, M. R., Vicente, E., Sarma, S. S. S., & Gulati, R. D. (2017). Microcystis extracts and single cells have differential impacts on the demography of cladocerans: a case study on Moina cf. micrura isolated from the Mediterranean coastal shallow lake (L'Albufera, Spain). Hydrobiologia, 798(1), 127-139. DOI: doi:10.1007/s10750-016-2665-2
• Rubenstein, M. A., Crowther, T. W., Maynard, D. S., Schilling, J. S., & Bradford, M. A. (2017). Decoupling direct and indirect effects of temperature on decomposition. Soil Biology and Biochemistry, 112, 110-116. DOI: doi:10.1016/j.soilbio.2017.05.005
• Zandberg, E. C., Gort, G., van Oers, K., & Hinde, C. A. (2017). Direct fitness benefits explain mate preference, but not choice, for similarity in heterozygosity levels. Ecology Letters, in press.
• Schlemper, T. R., Leite, M. F. A., Reis Lucheta, A., Shimels, M., Bouwmeester, H. J., van Veen, J. A., & Kuramae, E. E. (2017). Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils. FEMS Microbiology Ecology, in press. DOI: doi:10.1093/femsec/fix096
• Lürling, M., Noyma, N. P., Magalhães, L. D., Miranda, M., Mucci, M., Oosterhout, F. V.,... Marinho, M. M. (2017). Critical assessment of chitosan as coagulant to remove cyanobacteria. Harmful Algae, 66, 1 - 12. DOI: doi:10.1016/j.hal.2017.04.011
• Macel, M., Dostálek, T., Esch, S., Bucharová, A., van Dam, N. M., Tielbörger, K.,... Münzbergová, Z. (2017). Evolutionary responses to climate change in a range expanding plant. Oecologia, 184(2), 543-554. DOI: doi:10.1007/s00442-017-3864-x
• Tomotani, B. M., Caglar, E., de la Hera, I., Mateman, A. C., & Visser, M. E. (2017). Early arrival is not associated with more extra-pair fertilizations in a long-distance migratory bird. Journal of Avian Biology, 48(6), 854-861. DOI: doi:10.1111/jav.01317
• Laanbroek, H. J., Veenhuizen, P. T. M., Keijzer, R. M., & Hefting, M. M. (2017). Numerical relationships between archaeal and bacterial amoA genes vary by Icelandic Andosol classes. Microbial Ecology, in press. DOI: doi:10.1007/s00248-017-1032-9
• Wubs, E. R. J., & Bezemer, T. M. B. (2017). Temporal carry-over effects in sequential plant-soil feedbacks. Oikos, in press. DOI: doi:10.1111/oik.04526
• Cornelissen, I. J. M., Vijverberg, J., van den Beld, A. M., Helmsing, N. R., Verreth, J. A. J., & Nagelkerke, L. A. J. (2017). Heterogeneity in food-web interactions of fish in the Mwanza Gulf, Lake Victoria: a quantitative stable isotope study. Hydrobiologia. DOI: doi:10.1007/s10750-017-3297-x
• van Gils, S., Tamburini, G., Lorenzo, M., Biere, A., Van Agtmaal, M., Tyc, O.,... van der Putten, W. H. (2017). Soil pathogen-aphid interactions under differences in soil organic matter and mineral fertilizer. PLoS One, in press, [0179695]. DOI: doi:10.1371/journal.pone.0179695
• Cordovez, V., Mommer, L., Moisan, K., Lucas-Barbosa, D., Pierik, R., Mumm, R.,... Raaijmakers, J. M. (2017). Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani. Frontiers in Plant Science, 8, [01262]. DOI: doi:10.3389/fpls.2017.01262
• Noyma, N. P., de Magalhães, L., Miranda, M., Mucci, M., van Oosterhout, F., Huszar, V. L. M.,... Lürling, M. (2017). Coagulant plus ballast technique provides a rapid mitigation of cyanobacterial nuisance. PLoS One, 12(6), [e0178976]. DOI: doi:10.1371/journal.pone.0178976
• Paulo, A. M. S., Aydin, R., Dimitrov, M. R., Vreeling, H., Cavaleiro, A. J., García-Encina, P. A.,... Plugge, C. M. (2017). Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria. Applied Microbiology and Biotechnology, 101(12), 5163-5173. DOI: doi:10.1007/s00253-017-8212-x
• Baugh, A. T., Davidson, S. C., Hau, M., & van Oers, K. (2017). Temporal dynamics of the HPA axis linked to exploratory behavior in a wild European songbird (Parus major). General and Comparative Endocrinology, 250, 104-112. DOI: doi:10.1016/j.ygcen.2017.06.011
• Mendes, L. W., Raaijmakers, J. M., De Hollander, M., Mendes, R., & Tsai, S. M. (2017). Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. ISME Journal, in press.
• Cobben, M. M. P., Mitesser, O., & Kubisch, A. (2017). Evolving mutation rate advances the invasion speed of a sexual species. BMC Evolutionary Biology, 17(1), [150]. DOI: doi:10.1186/s12862-017-0998-8
• Janssen, A. B. G. (2017). A blooming business (PhD Thesis) Wageningen: Wageningen University
• Gomez Exposito, R. (2017). Microbiome dynamics of disease suppresive soils (PhD Thesis) Wageningen: Wageningen University
• Hillebrand, H., Blasius, B., Borer, E. T., Chase, J. M., Downing, J., Eriksson, B. K.,... Ryabov, A. B. (2017). Biodiversity change is uncoupled from species richness trends: consequences for conservation and monitoring. Journal of Applied Ecology, n/a-n/a. DOI: doi:10.1111/1365-2664.12959
• Van der Meij, A., Worsley, S. F., Hutchings, M. I., & van Wezel, G. P. (2017). Chemical ecology of antibiotic production by actinomycetes. FEMS Microbiology Reviews, 41(3), 392-416. DOI: doi:10.1093/femsre/fux005
• Miranda, M., Noyma, N., Pacheco, F. S., de Magalhaes, L., Pinto, E., Santos, S.,... Marinho, M. M. (2017). The efficiency of combined coagulant and ballast to remove harmful cyanobacterial blooms in a tropical shallow system. Harmful Algae, 65, 27-39. DOI: doi:10.1016/j.hal.2017.04.007
• Mucci, M., Noyma, N. P., de Magalhaes, L., Miranda, M., van Oosterhout, F., Guedes, I. A.,... Lürling, M. (2017). Chitosan as coagulant on cyanobacteria in lake restoration management may cause rapid cell lysis. Water Research, 118, 121-130. DOI: doi:10.1016/j.watres.2017.04.020
• Wubs, E. R. J. (2017). The steering role of plant-soil interactions in natural community dynamics and nature restoration (PhD Thesis)
• Cheng, K., Van de Waal, D. B., Niu, X. Y., & Zhao, Y. J. (2017). Combined Effects of Elevated pCO2 and Warming Facilitate Cyanophage Infections. Frontiers in Microbiology.
• Frenken, T., Alacid, E., Berger, S. A., Bourne, E. C., Gerphagnon, M., Grossart, H-P.,... Agha, R. (2017). Integrating chytrid fungal parasites into plankton ecology. Research gaps and needs. Environmental Microbiology, in press. DOI: doi:10.1111/1462-2920.13827
• Verhofstad, M. J. J. M., Poelen, M. D. M., Van Kempen, M. M. L., Bakker, E. S., & Smolders, A. J. P. (2017). Finding the harvesting frequency to maximize nutrient removal in a constructed wetland dominated by submerged aquatic plants. Ecological Engineering, 106, Part A, 423-430. DOI: doi:10.1016/j.ecoleng.2017.06.012
• Spoelstra, K., van Grunsven, R. H. A., Ramakers, J. J. C., Ferguson, K. B., Raap, T., Donners, M.,... Visser, M. E. (2017). Response of bats to light with different spectra: light-shy and agile bat presence is affected by white and green, but not red light. Proceedings of the Royal Society B: Biological Sciences, 284(1855), [0075]. DOI: doi:10.1098/rspb.2017.0075
• Grutters, B. M. C. (2017). Beyond barriers: ecosystem functions of alien aquatic plants (PhD Thesis) Utrecht University
• Atema, E. (2017). Telomeres, workload and life-history in great tits (PhD Thesis) [Groningen]: Rijksuniversiteit Groningen
• Gardner, J. L., Rowley, E., de Rebeira, P., de Rebeira, A., & Brouwer, L. (2017). Effects of extreme weather on two sympatric Australian passerine bird species. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1723). DOI: doi:10.1098/rstb.2016.0148
• Berney, C., Ciuprina, A., Bender, S., Brodie, J., Edgcomb, V., Kim, E.,... de Vargas, C. (2017). UniEuk: Time to Speak a Common Language in Protistology! Journal of Eukaryotic Microbiology, 64(3), 407-411. DOI: doi:10.1111/jeu.12414
• Vijverberg, J., Heidweiller, J., Sevenster, J. G., & Kortmulder, K. (2017). Food and micro-habitat partitioning among cyprinids in Sri Lankan hill-stream pools..
• Verhofstad, M. J. J. M., & Bakker, E. S. (2017). Classifying nuisance submerged vegetation depending on ecosystem services. Limnology, online, 1-14. DOI: doi:10.1007/s10201-017-0525-z
• Geisen, S., & Bonkowski, M. (2017). Methodological advances to study the diversity of soil protists and their functioning in soil food webs. Applied Soil Ecology, in press, -. DOI: doi:10.1016/j.apsoil.2017.05.021
• Grutters, B. M. C., Saccomanno, B., Gross, E. M., Van de Waal, D. B., van Donk, E., & Bakker, E. S. (2017). Growth strategy, phylogeny and stoichiometry determine the allelopathic potential of native and non-native plants. Oikos. DOI: doi:10.1111/oik.03956
• Laine, V., & van Oers, K. (2017). The Quantitative and Molecular Genetics of Individual Differences in Animal Personality. In J. Vonk, A. Weiss, & S. Kuczaj (Eds.), Personality in Nonhuman Animals Springer.
• Pangesti, N., Vandenbrande, S., Pineda, A., Dicke, M., Raaijmakers, J. M., & Van Loon, J. J. A. (2017). Antagonism between two root-associated beneficial Pseudomonas strains does not affect plant growth promotion and induced resistance against a leaf-chewing herbivore. FEMS Microbiology Ecology, 93(4), [fix038]. DOI: doi:10.1093/femsec/fix038
• Baugh, A. T., Witonsky, K. R., Davidson, S. C., Hyder, L., Hau, M., & van Oers, K. (2017). Novelty induces behavioural and glucocorticoid responses in a songbird artificially selected for divergent personalities. Animal Behaviour, 130, 221-231. DOI: doi:10.1016/j.anbehav.2017.06.028
• Tomotani, B. M., Amaya, J. P., Oda, G. A., & Valentinuzzi, V. S. (2016). Social modulation of the daily activity rhythm in a solitary subterranean rodent, the tuco-tuco (Ctenomys sp): SI: Chronobiology in Latin America. Sleep Science, 9(4), 280-284. DOI: doi:10.1016/j.slsci.2016.06.001
• Baugh, A. T., Senft, R. A., Firke, M., Lauder, A., Schroeder, J., Meddle, S. L.,... Hau, M. (2017). Risk-averse personalities have a systemically potentiated neuroendocrine stress axis: a multilevel experiment in Parus major. Hormones and Behavior, 93(July), 99-108. DOI: doi:10.1016/j.yhbeh.2017.05.011
• Frenken, T., Wierenga, J., Gsell, A. S., van Donk, E., Rohrlack, T., & Van de Waal, D. B. (2017). Changes in N:P Supply Ratios affect the Ecological Stoichiometry of a Toxic Cyanobacterium and its Fungal Parasite. Frontiers in Microbiology, 8, [1015]. DOI: doi:10.3389/fmicb.2017.01015
• Buitenhuis, R., Harvey, J. A., Vet, L. E. M., Boivin, G., & Brodeur, J. (2017). Comparing and contrasting life history variation in four aphid hyperparasitoids. Ecological Entomology, 42(3), 325-335. DOI: doi:10.1111/een.12390
• Schilder, J., Van Hardenbroek, M., Bodelier, P. L. E., Kirilova, E. P., Leuenberger, M., Lotter, A. F., & Heiri, O. (2017). Trophic state changes can affect the importance of methane-derived carbon in aquatic food webs. Proceedings of the Royal Society B: Biological Sciences, 284(1857), [278]. DOI: doi:10.1098/rspb.2017.0278
• Tóth, Z., Tuliozi, B., Baldan, D., Hoi, H., & Griggio, M. (2017). The effect of social connections on the discovery of multiple hidden food patches in a bird species. Scientific Reports, 7(1), 816. DOI: doi:10.1038/s41598-017-00929-8
• Westhoff, S., van Leeuwe, T. M., Qachach, O., Zhang, Z., van Wezel, G. P., & Rozen, D. E. (2017). The evolution of no-cost resistance at sub-MIC concentrations of streptomycin in Streptomyces coelicolor. ISME Journal, 11. DOI: doi:10.1038/ismej.2016.194
• Hammers, M., & Brouwer, L. (2017). Rescue behaviour in a social bird: removal of sticky ‘bird-catcher tree’ seeds by group members. Behaviour, 154(4), 403-411. DOI: https://doi.org/10.1163/1568539X-00003428
• Ho, A., Ijaz, U. Z., Janssens, T., Ruijs, R., Kim, S. Y., De Boer, W.,... Bodelier, P. L. E. (2017). Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. Global Change Biology Bioenergy, in press. DOI: doi:10.1111/gcbb.12457
• Scheublin, T. R. (2017). Protocols for the Identification of Phyllosphere-Induced Pollutant Degradation Genes. In T. J. McGenity, K. N. Timmis, & B. Nogales (Eds.), Hydrocarbon and Lipid Microbiology Protocols: Field Studies (pp. 229-235). Berlin, Heidelberg: Springer Berlin Heidelberg. DOI: doi:10.1007/8623_2015_176
• Hannula, S. E., Morriën, E., De Hollander, M., van der Putten, W. H., van Veen, J. A., & De Boer, W. (2017). Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture. ISME Journal, in press. DOI: doi:10.1038/ismej.2017.90
• Verhofstad, M. J. J. M., Alirangues, M. M., Reichman, E., van Donk, E., Lamers, L. P. M., & Bakker, E. S. (2017). Mass development of monospecific submerged macrophyte vegetation after the restoration of shallow lakes: roles of light, sediment nutrient levels, and propagule density. Aquatic Botany, 141(July), 29-38. DOI: doi:10.1016/j.aquabot.2017.04.004
• Visser, B., Willett, D. S., Harvey, J. A., & Alborn, H. T. (2017). Concurrence in the ability for lipid synthesis between life stages in insects. Royal Society Open Science, 4(3). DOI: doi:10.1098/rsos.160815
• Meunier, C. L., Broersma, M., El-Sabaawi, R., Halvorson, H., Herstoff, E. M., Van de Waal, D. B.,... Litchman, E. (2017). From elements to function: unifying ecological stoichiometry and trait-based ecology. Frontiers in Environmental Science, in press. DOI: doi:10.3389/fenvs.2017.00018
• Tyc, O., de Jager, V. C. L., Van den Berg, M., Gerards, S., Janssens, T., Zaagman, N.,... Garbeva, P. V. (2017). Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds. Microbial Biotechnology, 10(4), 910-025. DOI: doi:10.1111/1751-7915.1273
• Dassen, S., Cortois, R., Martens, H., De Hollander, M., Kowalchuk, G. A., van der Putten, W. H., & De Deyn, G. B. (2017). Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity. Molecular Ecology, 26(15), 4085-4098. DOI: doi:10.1111/mec.14175
• Morgado, L., Preite, V., Oplaat, C., Anava, S., Ferreira de Carvalho, J. L., Rechavi, O.,... Verhoeven, K. J. F. (2017). Small RNAs reflect grandparental environments in apomictic dandelion: Letter. Molecular Biology and Evolution, [msx150].
• Perez, J. E., Carrion, V. J., Bosse, M., Ferrão, L. F. V., De Hollander, M., Garcia, A. A. F.,... Raaijmakers, J. M. (2017). Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits. ISME Journal, in press. DOI: 10.1038/ismej.2017.85
• Bardgett, R. D., De Vries, F. T., & van der Putten, W. H. (2017). Soil Biodiversity and Ecosystem Functioning. In K. Tate (Ed.), Microbial Biomass: A Paradigm Shift in Terrestrial Biochemistry (pp. 119-140). World Scientific Publishing.
• Janssen, A. B. G., de Jager, V. C. L., Janse, J. H., Kong, X., Liu, S., Ye, W. M., & Mooij, W. M. (2017). Spatial identification of critical nutrient loads of large shallow lakes: Implications for Lake Taihu (China). Water Research, 119, 276-287. DOI: doi:10.1016/j.watres.2017.04.045
• Kong, X., He, W., Qin, N., Liu, W., Yang, B., Yang, C.,... Koelmans, A. A. (2017). Integrated ecological and chemical food web accumulation modeling explains PAH temporal trends during regime shifts in a shallow lake. Water Research, in press. DOI: doi:10.1016/j.watres.2017.04.042
• Weliange, W. S., Amarasinghe, U., Vijverberg, J., Leichtfried, M., & Füreder, L. (2017). A comparative analysis on the effects of river discharge on trophic interactions in two tropical streams. International Review of Hydrobiology, 102(1-2), 3-14. DOI: doi:10.1002/iroh.201601866
• Klaassen, M. R. J., Hahn, S. M., Korthals, H., & Madsen, J. (2017). Eggs brought in from afar: Svalbard-breeding pink-footed geese can fly their eggs across the Barents Sea. Journal of Avian Biology, 48(1), 173-179. DOI: doi:10.1111/jav.01364
• Zhang, X., Mei, X., & Gulati, R. D. (2017). Effects of omnivorous tilapia on water turbidity and primary production dynamics in shallow lakes: implications for ecosystem management. Reviews in Fish Biology and Fisheries, 27(1), 245-254. DOI: doi:10.1007/s11160-016-9458-6
• Pinzari, F., Maggi, O., Lunghini, D., Di Lonardo, P., & Persiani, A. M. (2017). A simple method for measuring fungal metabolic quotient and comparing carbon use efficiency of different isolates: Application to Mediterranean leaf litter fungi. Plant Biosystems, 151(2), 371-376. DOI: doi:10.1080/11263504.2017.1284166
• Vandegehuchte, M. L., van der Putten, W. H., Duyts, H., Schütz, M., & Risch, A. C. (2016). Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-specific. Oikos, 126(2). DOI: doi:10.1111/oik.03341
• Lürling, M., van Oosterhout, F., & Faassen, E. (2017). Eutrophication and Warming Boost Cyanobacterial Biomass and Microcystins. Toxins, 9. DOI: doi:10.3390/toxins9020064
• Green, A. J., Alcorlo, P., Peeters, E. T. H. M., Morris, E. P., Espinar, J. L., Bravo-Utrera, M. A.,... Scheffer, M. (2017). Creating a safe operating space for wetlands in a changing climate. Frontiers in Ecology and the Environment, 15(2), 99-107. DOI: doi:10.1002/fee.1459
• Velthuis, M., van Deelen, E., van Donk, E., Zhang, P., & Bakker, E. S. (2017). Impact of temperature and nutrients on carbon:nutrient tissue stoichiometry of submerged aquatic plants: an experiment and meta-analysis. Frontiers in Plant Science, 8, [655]. DOI: doi:10.3389/fpls.2017.00655
• Veen, G. F., De Long, J. R., Kardol, P., Sundqvist, M. K., Snoek, B., & Wardle, D. A. (2017). Coordinated responses of soil communities to elevation in three subarctic vegetation types. Oikos, in press. DOI: http://dx.doi.org/10.1111/oik.04158
• Teurlincx, S., Velthuis, M., Seroka, D., Govaert, L., van Donk, E., Van de Waal, D. B., & Declerck, S. A. J. (2017). Species sorting and stoichiometric plasticity control community C:P ratio of first-order aquatic consumers. Ecology Letters, 20(6), 751-760. DOI: doi:10.1111/ele.12773
• Sitters, J., Bakker, E. S., Veldhuis, M., Veen, G. F., Venterink, H. O., & Vanni, M. J. (2017). The stoichiometry of nutrient release by terrestrial herbivores and its ecosystem consequences. Frontiers of Earth Science, in press. DOI: doi:10.3389/feart.2017.00032
• Gilioli, G., Schrader, G., Carlsson, N., van Donk, E., van Leeuwen, C. H. A., Martín, P. R.,... Vos, S. (2017). Environmental risk assessment for invasive alien species: A case study of apple snails affecting ecosystem services in Europe. Environmental Impact Assessment Review, 65, 1-11. DOI: doi:10.1016/j.eiar.2017.03.008
• De Boer, W. (2017). Upscaling of fungal-bacterial interactions: from the lab to the field. Current Opinion in Microbiology, 37, 35-41. DOI: doi:10.1016/j.mib.2017.03.007
• Geisen, S., Mitchell, E. A., Wilkinson, D. M., Adl, S., Bonkowski, M., Brown, M. W.,... Lara, E. (2017). Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology and Biochemistry, 111, 94-103. DOI: doi:10.1016/j.soilbio.2017.04.001
• Green, A. J., Soons, M. B., Brochet, A-L., & Kleyheeg, E. (2016). Dispersal of Plants by Waterbirds. In Ç. H. Şekercioğlu, D. G. Wenny, & C. J. Whelan (Eds.), Why Birds Matter: Avian Ecological Function and Ecosystem Services. (pp. 147-195). Chicago: University of Chicago Press.
• Eichhorn, G., Bil, W., & Fox, J. W. (2017). Individuality in northern lapwing migration and its link to timing of breeding. Journal of Avian Biology, in press. DOI: doi:10.1111/jav.01374
• Scheres, B., & van der Putten, W. H. (2017). The plant perceptron connects environment to development. Nature, 543(7645), 337-345. DOI: doi:10.1038/nature22010
• Van de Pol, M., Jenouvrier, S., Cornelissen, J. H. C., & Visser, M. E. (2017). Behavioural, ecological and evolutionary response to extreme climatic events: Challenges & directions. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1723), [134]. DOI: doi:10.1098/rstb.2016.0134
• Bailey, L., Ens, B. J., Both, C., Heg, D., Oosterbeek, K., & Van de Pol, M. (2017). No phenotypic plasticity in nest-site selection in response to extreme flooding events. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1723), [139]. DOI: doi:10.1098/rstb.2016.0139
• Aranzamendi, N., Hall, M., kingma, S. A., Van de Pol, M., & Peters, A. (2016). Fast response to rainfall connects the timing of breeding to food abundance and reproductive output in a tropical bird. In N. A. H. Aranzamendi (Ed.), Life-history variation in a tropical cooperative bird: Ecological and social effects on productivity (Vol. Thesis, pp. 17)
• Lameris, T. K., Scholten, I., Bauer, S., Cobben, M. M. P., Ens, B. J., & Nolet, B. A. (2017). Potential for an Arctic-breeding migratory bird to adjust spring migration phenology to Arctic amplification. Global Change Biology, in press. DOI: doi:10.1111/gcb.13684
• Wang, C., He, R., Wu, Y., Lürling, M., Cai, H., Jiang, H-L., & Liu, X. (2017). Bioavailable phosphorus (P) reduction is less than mobile P immobilization in lake sediment for eutrophication control by inactivating agents. Water Research, 109, 196-206. DOI: doi:10.1016/j.watres.2016.11.045
• Lemmens, P., Declerck, S. A. J., Tuytens, K., Vanderstukken, M., & De Meester, L. (2017). Bottom-up effects on biomass versus top-down effects on identity: a multiple lake fish community manipulation experiment. Ecosystems. DOI: doi:10.1007/s10021-017-0144-x
• Eberlein, T., Wohlrab, S., Rost, B., John, U., Bach, L. T., Riebesell, U., & Van de Waal, D. B. (2017). Effects of ocean acidification on primary production in a coastal North Sea phytoplankton community. PLoS One, 12(3), [e0172594]. DOI: doi:10.1371/journal.pone.0172594
• Ossowicki, A., Jafra, S., & Garbeva, P. V. (2017). The Antimicrobial Volatile Power of the Rhizospheric Isolate Pseudomonas donghuensis P482. PLoS One, 12(3), [174362]. DOI: doi:10.1371/journal.pone.0174362
• Gulati, R. D., & Zadereev, E. S. (2017). Conclusion: Ecology of Meromictic Lakes. In R. D. Gulati, E. S. Zadereev, & A. G. Degermendzhi (Eds.), Ecology of Meromictic Lakes (pp. 379-398). Cham: Springer International Publishing. DOI: doi:10.1007/978-3-319-49143-1_13
• Zadereev, E. S., Gulati, R. D., & Camacho, A. (2017). Biological and Ecological Features, Trophic Structure and Energy Flow in Meromictic Lakes. In R. D. Gulati, E. S. Zadereev, & A. G. Degermendzhi (Eds.), Ecology of Meromictic Lakes (pp. 61-86). Cham: Springer International Publishing. DOI: doi:10.1007/978-3-319-49143-1_4
• Zadereev, E. S., Boehrer, B., & Gulati, R. D. (2017). Introduction: Meromictic Lakes, Their Terminology and Geographic Distribution. In R. D. Gulati, E. S. Zadereev, & A. G. Degermendzhi (Eds.), Ecology of Meromictic Lakes (pp. 1-11). Cham: Springer International Publishing. DOI: doi:10.1007/978-3-319-49143-1_1
• Brandenburg, K. M., de Senerpont Domis, L. N., Wohlrab, S., Krock, B., John, U., van Scheppingen, Y.,... Van de Waal, D. B. (2017). Combined physical, chemical and biological factors shape Alexandrium ostenfeldii blooms in the Netherlands. Harmful Algae, 63, 146-153. DOI: doi:10.1016/j.hal.2017.02.004
• Junker, R. R., Kuppler, J., Amo, L., Blande, J. D., Borges, R. M., Dicke, M.,... Köllner, T. G. (2017). Covariation and phenotypic integration in chemical communication displays: biosynthetic constraints and eco-evolutionary implications. New Phytologist. DOI: doi:10.1111/nph.14505
• Bosmans, L., De Bruijn, I., Gerards, S., Moerkens, R., Van Looveren, L., Wittemans, L.,... Lievens, B. (2017). Potential for biocontrol of hairy root disease by a Paenibacillus clade. Frontiers in Microbiology, 8, [447]. DOI: doi:10.3389/fmicb.2017.00447
• Zhang, L., Hou, L., Laanbroek, H. J., Guo, D., & Wang, Q. (2015). Effects of Mowing Heights on N2O Emission from Temperate Grasslands in Inner Mongolia, Northern China. 04(05), 397-407. DOI: doi:10.4236/ajcc.2015.45032
• Koorem, K., Tulva, I., Davison, J., Jairus, T., Öpik, M., Vasar, M.,... Moora, M. (2017). Arbuscular mycorrhizal fungal communities in forest plant roots are simultaneously shaped by host characteristics and canopy-mediated light availability. Plant and Soil, 410(1-2), 259-271. DOI: doi:10.1007/s11104-016-3004-0
• Dejen, E., Anteneh, W., & Vijverberg, J. (2017). The decline of the Lake Tana (Ethiopia) fisheries: Causes and possible solutions. Land Degradation and Development, in press. DOI: doi:10.1002/ldr.2730
• van der Putten, W. H. (2017). Belowground drivers of plant diversity. Science, 355(6321), 134-135. DOI: doi:10.1126/science.aal4549
• de Magalhães, L., Noyma, N. P., Furtado, L. L., Mucci, M., van Oosterhout, F., Huszar, V. L. M.,... Lürling, M. (2017). Efficacy of Coagulants and Ballast Compounds in Removal of Cyanobacteria (Microcystis) from Water of the Tropical Lagoon Jacarepaguá (Rio de Janeiro, Brazil). Estuaries and Coasts, 40(1), 121-133. DOI: doi:10.1007/s12237-016-0125-x
• Kleyheeg, E., Treep, J., de Jager, M., Nolet, B. A., & Soons, M. B. (2017). Seed dispersal distributions resulting from landscape-dependent daily movement behavior of a key vector species, Anas platyrhynchos. Journal of Ecology, in press. DOI: doi:10.1111/1365-2745.12738
• Baveco, J. M., Bergjord, A. K., Bjerke, J. W., Chudzińska, M. E., Pellissier, L., Simonsen, C. E.,... Nolet, B. A. (2017). Combining modelling tools to evaluate a goose management scheme. Ambio, 46(Supplement 2), 210-223. DOI: doi:10.1007/s13280-017-0899-5
• Kleyheeg, E., Van Dijk, J. G. B., Tsopoglou-Gkina, D., Woud, T. Y., Boonstra, D. K., Nolet, B. A., & Soons, M. B. (2017). Movement patterns of a keystone waterbird species are highly predictable from landscape configuration. Movement Ecology, 5(2).
• Lameris, T. K., Jochems, F., van der Graaf, A. J., Andersson, M., Limpens, J., & Nolet, B. A. (2017). Forage plants of an Arctic-nesting herbivore show larger warming response in breeding than wintering grounds, potentially disrupting migration phenology. Ecology and Evolution, 7(8), 2652-2660. DOI: 10.1002/ece3.2859
• Di Lonardo, P., De Boer, W., Klein Gunnewiek, P. J. A., Hannula, S. E., & Van der Wal, A. (2017). Priming of soil organic matter: Chemical structure of added compounds is more important than the energy content. Soil Biology & Biochemistry, 108, 41-54. DOI: doi:10.1016/j.soilbio.2017.01.017
• Alberti, J., Bakker, E. S., van Klink, R., Olff, H., & Smit, C. (2017). Herbivore exclusion promotes a more stochastic plant community assembly in a natural grassland. Ecology, 98(4), 961-970. DOI: doi:10.1002/ecy.1741
• Grutters, B. M. C., Gross, E. M., van Donk, E., & Bakker, E. S. (2017). Periphyton density is similar on native and non-native plant species. Freshwater Biology, 62(5), 906-915. DOI: doi:10.1111/fwb.12911
• Bakker, E. S. (2017). Herbivore size matters for productivity-richness relationships in African savannas: Commentary on Burkepile et al. (2017). Journal of Ecology, 105(3), 687-689. DOI: doi:10.1111/1365-2745.12745
• Tice, A. K., Shadwick, L. L., Fiore-Donno, A. M., Geisen, S., Kang, S., Schuler, G. A.,... Brown, M. W. (2016). Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group. 11(1), [69]. DOI: doi:10.1186/s13062-016-0171-0
• Grutters, B. M. C., Roijendijk, Y., Verberk, W. C. E. P., & Bakker, E. S. (2017). Plant traits and plant biogeography control the biotic resistance provided by generalist herbivores. Functional Ecology, 31(`6), 1184-1192. DOI: doi:10.1111/1365-2435.12835
• van der Jeugd, H. P., & Kwak, A. (2017). Management of a Dutch resident barnacle goose Branta leucopsis population: How can results from counts, ringing and hunting bag statistics be reconciled? Ambio, 46(Supplement 2), 251-261. DOI: doi:10.1007/s13280-017-0900-3
• Li, Y., Li, Q., Yang, J., Xiaotao, L., Liang, W., Han, X., & Bezemer, T. M. (2017). Home-field advantages of litter decomposition increase with increasing N deposition rates: a litter and soil perspective. Functional Ecology, in press. DOI: doi:10.1111/1365-2435.12863
• Leite, M. F. A., Pan, Y., Bloem, J., ten Berge, H., & Kuramae, E. E. (2017). Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank. Scientific Reports, 7, [42634]. DOI: doi:10.1038/srep42634
• Ho, A., Di Lonardo, P., & Bodelier, P. L. E. (2017). Revisiting life strategy concepts in environmental microbial ecology. FEMS Microbiology Ecology, 93(3), [fix006]. DOI: doi:10.1093/femsec/fix006
• Schmidt, R. L., de Jager, V. C. L., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K.,... Garbeva, P. V. (2017). Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Scientific Reports, 7, [862 ]. DOI: doi:10.1038/s41598-017-00893-3
• Da Silva, A., de Jong, M., van Grunsven, R. H. A., Visser, M. E., Kempenaers, B., & Spoelstra, K. (2017). Experimental illumination of a forest: no effects of lights of different colours on the onset of the dawn chorus in songbirds. Royal Society Open Science, 4(1), [160638]. DOI: doi:10.1098/rsos.160638
• Jeffery, S., Memelink, I., Hodgson, E., Jones, S., van de Voorde, T. F. J., Martijn Bezemer, T.,... van Groenigen, J. W. (2017). Initial biochar effects on plant productivity derive from N fertilization. Plant and Soil, 415(1-2), 435-448. DOI: doi:10.1007/s11104-016-3171-z
• Daebeler, A., Bodelier, P. L. E., Hefting, M. M., Rütting, T., & Laanbroek, H. J. (2017). Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil. Soil Biology & Biochemistry, 107, 114-124. DOI: doi:10.1016/j.soilbio.2016.12.013
• Velthuis, M., de Senerpont Domis, L. N., Frenken, T., Stephan, S., Kazanjian, G., Aben, R.,... Van de Waal, D. B. (2017). Warming advances top-down control and reduces producer biomass in a freshwater plankton community. Ecosphere, 8(1), [e01651]. DOI: doi:10.1002/ecs2.1651
• Gussekloo, S. W. S., Berthaume, M., Pulaski, D., Westbroek, I., Waarsing, J. H., Heinen, R.,... Dumont, B. (2017). Functional and evolutionary consequences of cranial fenestration in birds. Evolution, 71(5), 1327-1338. DOI: doi:10.1111/evo.13210
• Pangesti, N., Reichelt, M., van de Mortel, J. E., Kapsomenou, E., Gershenzon, J., van Loon, J. J. A.,... Pineda, A. (2016). Jasmonic Acid and Ethylene Signaling Pathways Regulate Glucosinolate Levels in Plants During Rhizobacteria-Induced Systemic Resistance Against a Leaf-Chewing Herbivore. Journal of Chemical Ecology, 42(12), 1212-1225. DOI: doi:10.1007/s10886-016-0787-7
• Barrett, C. B., Zhou, M., Reich, P. B., Crowther, T. W., & Liang, J. (2016). Forest value: More than commercial - Response. Science, 354(6319), 1541-1542. DOI: doi:10.1126/science.aal2612
• Weisskopf, L., Garbeva, P. V., Ryu, C-M., & Raaijmakers, J. M. (2016). Smelly fumes: volatile-mediated communication between bacteria and other organisms. Frontiers in Microbiology, 7, [2031]. DOI: doi:10.3389/fmicb.2016.02031
• Tomotani, B. M., & Silveira, L. F. (2016). A reassessment of the taxonomy of Crypturellus noctivagus (Wied, 1820). 24(1).
• Roligheid, J., Jeppesen, E., Søndergaard, M., Janse, J. H., Mooij, W. M., & Trolle, D. (2016). Climate Change Will Make Recovery from Eutrophication More Difficult in Shallow Danish Lake Søbygaard. Water, 8(10). DOI: doi:10.3390/w8100459
• Procházka, P., Hahn, S., Rolland, S., van der Jeugd, H., Csörgő, T., Jiguet, F.,... Korner-Nievergelt, F. (2017). Delineating large-scale migratory connectivity of reed warblers using integrated multistate models. Diversity and Distributions, 23(1), 27-40. DOI: doi:10.1111/ddi.12502
• Ter Heerdt, G. N. J., Veen, C. G. F., Van der Putten, W. H., & Bakker, J. P. (2017). Effects of temperature, moisture and soil type on seedling emergence and mortality of riparian plant species. Aquatic Botany, 136, 82-94. DOI: doi:10.1016/j.aquabot.2016.09.008
• Cortois, R., Veen, C., Duyts, H., Abbas, M., Strecker, T., Kostenko, O.,... van der Putten, W. H. (2017). Possible mechanisms underlying abundance and diversity responses of nematode communities to plant diversity. Ecosphere, 8(5), [e01719]. DOI: doi:10.1002/ecs2.1719
• Kuiper, J. J., Verhofstad, M. J. J. M., Louwers, E., Bakker, E. S., Brederveld, R. J., van Gerven, L. P. A.,... Mooij, W. M. (2017). Mowing Submerged Macrophytes in Shallow Lakes with Alternative Stable States: Battling the Good Guys? Environmental Management, 59(4), 619-634. DOI: doi:10.1007/s00267-016-0811-2
• Geudens, N., Nasir, M. N., Crowet, J-M., Raaijmakers, J. M., Fehér, K., Coenye, T.,... Deleu, M. (2017). Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group. 1859(3), 331-339. DOI: doi:10.1016/j.bbamem.2016.12.013
• Snijders, L., van Oers, K., & Naguib, M. (2017). Sex-specific responses to territorial intrusions in a communication network: evidence from radio-tagged great tits. Ecology and Evolution, 7(3), 918-927. DOI: doi:10.1002/ece3.2686
• Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A., & Kuramae, E. E. (2017). Successive DNA extractions improve characterization of soil microbial communities. PeerJ, 5, [e2915]. DOI: doi:10.7717/peerj.2915
• Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L.,... Kuramae, E. E. (2017). Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications. Scientific Reports, 7, [41193]. DOI: doi:10.1038/srep41193
• Harvey, J. A., Essens, T., Las, R., van Veen, C., Visser, B., Ellers, J.,... Gols, R. (2017). Honey and honey-based sugars partially affect reproductive trade-offs in parasitoids exhibiting different life-history and reproductive strategies. Journal of Insect Physiology, 98(April), 134-140. DOI: doi:10.1016/j.jinsphys.2016.12.003
• Urem, M., Świątek-Połatyńska, M. A., Rigali, S., & van Wezel, G. P. (2016). Intertwining nutrient-sensory networks and the control of antibiotic production in Streptomyces. Molecular Microbiology, 102(2), 183-195. DOI: doi:10.1111/mmi.13464
• Neuenkamp, L., Lewis, R. J., Koorem, K., Zobel, K., Zobel, M., & Botta-dukát, Z. (Ed.) (2016). Changes in dispersal and light capturing traits explain post-abandonment community change in semi-natural grasslands. Journal of Vegetation Science, 27(6), 1222-1232. DOI: doi:10.1111/jvs.2016.27.issue-6
• Mesarich, C. H., Stergiopoulos, I., Beenen, H. G., Cordovez, V., Guo, Y., Karimi Jashni, M.,... de Wit, P. J. G. M. (2016). A conserved proline residue in Dothideomycete Avr4 effector proteins is required to trigger a Cf-4-dependent hypersensitive response. Molecular Plant Pathology, 17(1), 84-95. DOI: doi:10.1111/mpp.12265
• Kolter, R., & van Wezel, G. P. (2016). Goodbye to brute force in antibiotic discovery? 1, 15020. DOI: doi:10.1038/nmicrobiol.2015.20
• Kim, S. Y., Gutierrez, J., & Kim, P. J. (2016). Unexpected stimulation of CH4 emissions under continuous no-tillage system in mono-rice paddy soils during cultivation. Geoderma, 267, 34-40. DOI: doi:10.1016/j.geoderma.2015.12.021
• Griffiths, B., Römbke, J., Schmelz, R., Scheffczyk, A., Faber, J., Bloem, J.,... Stone, D. (2016). Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function. Ecological Indicators, 69, 213-223. DOI: doi:10.1016/j.ecolind.2016.04.023
• van Dam, N. M., Weinhold, A., & Garbeva, P. V. (2016). Calling in the Dark: the Role of Volatiles for Communication in the Rhizosphere. In Deciphering Chemical language of Plant Communication (pp. 175-210). Springer. DOI: doi:10.1007/978-3-319-33498-1_8
• Rijks, J., Kik, M., Slaterus, R., Foppen, R., Stroo, A., Ijzer, J.,... Reusken, C. (2016). Widespread Usutu virus outbreak in birds in the Netherlands, 2016. Eurosurveillance, 21(45), [30391]. DOI: http://dx.doi.org/10.2807/1560-7917.ES.2016.21.45.30391
• Wang, M., Biere, A., van der Putten, W. H., Bezemer, T. M., & Brinkman, E. P. (2017). Timing of simulated aboveground herbivory influences population dynamics of root-feeding nematodes. Plant and Soil, 415(1-2), 215-228. DOI: 10.1007/s11104-016-3149-x
• Heylen, D. J. A., Sprong, H., Krawczyk, A., Van Houtte, N., Genné, D., Gomez-Chamorro, A.,... Voordouw, M. J. (2017). Inefficient co-feeding transmission of Borrelia afzelii in two common European songbirds. Scientific Reports, 7, [39596]. DOI: doi:10.1038/srep39596
• Caizan Juanarena, L., ter Heijne, A., Buisman, C., & Van der Wal, A. (2016). Wood Degradation by Thermotolerant and Thermophilic Fungi for Sustainable Heat Production. ACS Sustainable Chemistry & Engineering, 4(12), 6355-6361. DOI: 10.1021/acssuschemeng.6b00914
• Bailey, L., & Van de Pol, M. (2016). climwin: An R Toolbox for Climate Window Analysis. PLoS One, 11(12), [167980]. DOI: doi:10.1371/journal.pone.0167980
• Lupatini, M., Korthals, G. W., De Hollander, M., Janssens, T. K. S., & Kuramae, E. E. (2017). Soil microbiome is more heterogeneous in organic than in conventional farming system. Frontiers in Microbiology, 7, [2064]. DOI: doi:10.3389/fmicb.2016.02064
• Rall, B. C., & Latz, E. (2016). Analyzing pathogen suppressiveness in bioassays with natural soils using integrative maximum likelihood methods in R. PeerJ, 4, e2615. DOI: doi:10.7717/peerj.2615
• Kuiper, J. J. (2016). Making eco logic and models work: An integrative approach to lake ecosystem modelling (PhD Thesis) Wageningen: Wageningen University
• Preite, V. (2016). Epigenetic inheritance in apomictic dandelions (PhD Thesis) Wageningen: Wageningen University
• Van Gerven, L. P. A. (2016). The ecology of ditches : a modeling perspective (PhD Thesis) Wageningen: Wageningen University
• Tyc, O. (2016). Mining into interspecific bacterial interactions (PhD Thesis) Wageningen: Wageningen University
• Cordovez da Cunha, V. (2016). Volatile-mediated interactions in the rhizosphere (PhD Thesis) Wageningen: Wageningen University
• Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B.,... Bradford, M. A. (2016). Quantifying global soil carbon losses in response to warming. Nature, 540(7631), 104-108. DOI: doi:10.1038/nature20150
• Visser, M. E. (2017). Phenological Shifts in Animals Under Contemporary Climate Change. In B. D. Roitberg (Ed.), Reference Module in Life Sciences Elsevier. DOI: doi:10.1016/B978-0-12-809633-8.02301-3
• Morosinotto, C., Thomson, R. L., Ruuskanen, S., Korpimäki, E., Lehikoinen, E., Möstl, E., & Laaksonen, T. (2016). Maternal transfer of androgens in eggs is affected by food supplementation but not by predation risk. Journal of Avian Biology, 47(5), 629-641. DOI: doi:10.1111/jav.00874
• van Geem, M., Gols, R., Raaijmakers, C. E., & Harvey, J. A. (2016). Effects of population-related variation in plant primary and secondary metabolites on aboveground and belowground multitrophic interactions. Chemoecology, 26(6), 219-233. DOI: doi:10.1007/s00049-016-0222-0
• Loxdale, H. D., & Harvey, J. A. (2016). The ‘generalism’ debate: misinterpreting the term in the empirical literature focusing on dietary breadth in insects. Biological Journal of the Linnean Society, 119(2), 265-282. DOI: doi:10.1111/bij.12816
• De Ventura, L., Sarpe, D., Kopp, K., & Jokela, J. (2016). Variability in phenotypic tolerance to low oxygen in invasive populations of quagga and zebra mussels. Aquatic Invasions, 11(3). DOI: doi:10.3391/ai.2016.11.3.05
• Ode, P. J., Harvey, J. A., Reichelt, M., Gershenzon, J., & Gols, R. (2016). Differential induction of plant chemical defenses by parasitized and unparasitized herbivores: consequences for reciprocal, multitrophic interactions. Oikos, 125(10), 1398-1407. DOI: doi:10.1111/oik.03076
• Uroz, S., Oger, P., Tisserand, E., Cebron, A., Turpault, M. -P., Buee, M.,... Frey-Klett, P. (2016). Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities. Scientific Reports, 6. DOI: doi:10.1038/srep27756
• Gsell, A. S., Scharfenberger, U., Özkundakci, D., Walters, A., Hansson, L-A., Janssen, A. B. G.,... Adrian, R. (2016). Evaluating early-warning indicators of critical transitions in natural aquatic ecosystems. Proceedings of the National Academy of Sciences, 113(50), E8089-E8095. DOI: doi:10.1073/pnas.1608242113
• Cheng, X., Cordovez da Cunha, V., Etalo, D. W., van der Voort, M., & Raaijmakers, J. M. (2016). Role of the GacS Sensor Kinase in the Regulation of Volatile Production by Plant Growth-Promoting Pseudomonas fluorescens SBW25. Frontiers in Plant Science, 7, 1706. DOI: doi:10.3389/fpls.2016.01706
• Hannula, S. E., & van Veen, J. A. (2016). Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils. Frontiers in Microbiology, 7, [fmicb.2016.01897]. DOI: doi:10.3389/fmicb.2016.01897
• Kurm, V., van der Putten, W. H., De Boer, W., Naus-Wiezer, S. M. H., & Hol, W. H. G. (2017). Low abundant soil bacteria can be metabolically versatile and fast growing. Ecology, 98(2), 555-564. DOI: doi:10.1002/ecy.1670
• Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M.,... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, in press, [14349]. DOI: doi:10.1038/ncomms14349
• Gianuca, A. T., Declerck, S. A. J., Lemmens, P., & De Meester, L. (2017). Effects of dispersal and environmental heterogeneity on the replacement and nestedness components of β-diversity. Ecology, 98(7), 525-533. DOI: doi:10.1002/ecy.1666
• Carey, J. C., Tang, J., Templer, P. H., Kroeger, K. D., Crowther, T. W., Burton, A. J.,... Tietema, A. (2016). Temperature response of soil respiration largely unaltered with experimental warming. Proceedings of the National Academy of Sciences of the United States of America, 113(48), 13797-13802. DOI: doi:10.1073/pnas.1605365113
• Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V.,... Hol, W. H. G. (2017). Where less may be more: How the rare biosphere pulls ecosystems strings. ISME Journal, 11, 853-862. DOI: doi:10.1038/ismej.2016.174
• Tyc, O., Song, C., Dickschat, J., Vos, M., & Garbeva, P. V. (2017). The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria. Trends in Microbiology, 25(4), 280-292. DOI: doi:10.1016/j.tim.2016.12.002
• Liang, J., Crowther, T. W., Picard, N., Wiser, S., Zhou, M., Alberti, G.,... Reich, P. B. (2016). Positive biodiversity-productivity relationship predominant in global forests. Science, 354(6309), [6309]. DOI: 10.1126/science.aaf8957
• van der Wal, A., & de Boer, W. (2017). Dinner in the dark: Illuminating drivers of soil organic matter decomposition. Soil Biology & Biochemistry, 105, 45-48. DOI: doi:10.1016/j.soilbio.2016.11.006
• Balk, M., Keuskamp, J., & Laanbroek, H. J. (2016). Potential of sulfate reduction in mangrove forest soils: Comparison between two dominant species of the Americas. Frontiers in Microbiology, in press, [2016.01855]. DOI: doi:10.3389/fmicb.2016.01855
• Shelby, N., Duncan, R. P., van der Putten, W. H., McGinn, K. J., Weser, C., & Hulme, P. E. (2016). Plant mutualisms with rhizosphere microbiota in introduced versus native ranges. Journal of Ecology, 104(5), 1259-1270. DOI: doi:10.1111/1365-2745.12609
• Paolucci, S., Salis, L., Vermeulen, C. J., Beukeboom, L. W., & van de Zande, L. (2016). QTL analysis of the photoperiodic response and clinal distribution of period alleles in Nasonia vitripennis. Molecular Ecology, 25(19), 4805-4817. DOI: doi:10.1111/mec.13802
• Rice, M. C., Norton, J. M., Valois, F., Bollmann, A., Bottomley, P. J., Klotz, M. G.,... Daum, C. (2016). Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil. Standards in Genomic Sciences, 11(1), 46. DOI: doi:10.1186/s40793-016-0168-4
• Kostenko, O., Mulder, P. P. J., Courbois, M., & Bezemer, T. M. B. (2017). Effects of plant diversity on the concentration of secondary plant metabolites and the density of arthropods on focal plants in the field. Journal of Ecology, 105(3), 647-660. DOI: doi:10.1111/1365-2745.12700
• Snijders, L., Weme, L. E. N., de Goede, P., Savage, J. L., van Oers, K., & Naguib, M. (2017). Context-dependent effects of radio transmitter attachment on a small passerine. Journal of Avian Biology, 48(5), 650-659. DOI: doi:10.1111/jav.01148
• Tyc, O., Tomás-Menor, L., Garbeva, P. V., Barrajón-Catalán, E., & Micol, V. (2016). Validation of the AlamarBlue® assay as a fast screening method to determine the antimicrobial activity of botanical extracts. PLoS One, 11(12), [e0169090]. DOI: doi:10.1371/journal.pone.0169090
• Campanharo, J. C., Kielak, A. M., Castellane, T. C., Kuramae, E. E., & Lemos, E. G. (2016). Optimized medium culture for Acidobacteia subdivision 1 strains. FEMS Microbiology Letters, 363(21), [fnw245]. DOI: doi:10.1093/femsle/fnw245
• Steenbergh, A. K., Veraart, A. J., Ho, A., & Bodelier, P. L. E. (2017). Microbial Ecosystem Functions in Wetlands Under Disturbance. In K. Tate (Ed.), Microbial Biomass: A Paradigm Shift in Terrestrial Biochemistry World Scientific Publishing.
• Gulati, R. D., Zadereev, E. S., & Degermendzhy, A. G. (Eds.) (2017). Ecology of Meromictic Lakes. (Ecological Studies; Vol. 228). Springer.
• Kos, M., Jing, J., Keesmaat, I., Declerck, S. A. J., Wagenaar, R., & Bezemer, T. M. B. (2017). After-life effects: living and dead invertebrates differentially affect plants and their associated above- and belowground multitrophic communities. Oikos, 126(6), 888-899. DOI: doi:10.1111/oik.03734
• Hau, M., Casagrande, S., Ouyang, J. Q., & Baugh, A. T. (2016). Chapter Two - Glucocorticoid-Mediated Phenotypes in Vertebrates: Multilevel Variation and Evolution. In Advances in the Study of Behavior (Vol. Volume 48, pp. 41-115). Academic Press. DOI: doi:10.1016/bs.asb.2016.01.002
• van der Aart, L. T., Lemmens, N., van Wamel, W. J., & van Wezel, G. P. (2016). Substrate Inhibition of VanA by D-Alanine Reduces Vancomycin Resistance in a VanX-Dependent Manner. Antimicrobial Agents and Chemotherapy, 60(8), 4930-4939. DOI: doi:10.1128/aac.00276-16
• Tecon, R., & Leveau, J. H. J. (2016). Symplasmata are a clonal, conditional, and reversible type of bacterial multicellularity. Scientific Reports, 6, [31914]. DOI: doi:10.1038/srep31914
• Zandberg, L., Quinn, J. L., Naguib, M., & van Oers, K. (2016). Personality-dependent differences in problem-solving performance in a social context reflect foraging strategies. Behavioural Processes, in press. DOI: doi:10.1016/j.beproc.2016.09.007
• Snijders, L., Naguib, M., & van Oers, K. (2017). Dominance rank and boldness predict social attraction in great tits. Behavioral Ecology, 28(2), 398-406. [arw158].
• Poen, M. J., Verhagen, J. H., Manvell, R. J., Brown, I., Besteboer, T. M., van der Vliet, S.,... Fouchier, R. A. M. (2016). Lack of virological and serological evidence for continued circulation of highly pathogenic avian influenza H5N8 virus in wild birds in the Netherlands, 14 November 2014 to 31 January 2016. Eurosurveillance, 21(38), [pii=30349].
• Dominoni, D. M. (2017). Ecological effects of light pollution: how can we improve our understanding using light loggers on individual animals? In Ecology and conservation of birds in urban environments (Vol. Chap. 13, pp. 251-270). Springer Verlag. DOI: doi:10.1007/978-3-319-43314-1
• Dominoni, D. M., Greif, S., Nemeth, E., & Brumm, H. (2016). Airport noise predicts song timing of European birds. Ecology and Evolution, 6(17), 6151-6159. DOI: doi:10.1002/ece3.2357
• Bakker, J. P., Baas, A. C. W., Bartholdy, J., Jones, L., Ruessink, G., Temmerman, S., & van de Pol, M. (2016). Environmental Impacts-Coastal Ecosystems. In M. Quante, & F. Colijn (Eds.), North Sea Region Climate Change Assessment (pp. 275-314). Cham: Springer International Publishing. DOI: doi:10.1007/978-3-319-39745-0_9
• Lejeune, L., van de Pol, M., Cockburn, A., Louter, M., & Brouwer, L. (2016). Male and female helper effects on maternal investment and adult survival in red-winged fairy-wrens. Behavioral Ecology, 27(6), 1841-1850. DOI: doi:10.1093/beheco/arw121
• Tomotani, B. M., Gienapp, P., Beersma, D. G. M., & Visser, M. E. (2016). Climate change relaxes the time constraints for late-born offspring in a long-distance migrant. Proceedings of the Royal Society B-Biological Sciences, 283(1839). DOI: doi:10.1098/rspb.2016.1366
• Hoye, B. J., Munster, V. J., Huig, N., de Vries, P., Oosterbeek, K., Tijsen, W.,... van Gils, J. A. (2016). Hampered performance of migratory swans: intra- and inter-seasonal effects of avian influenza virus. Integrative and Comparative Biology, 56(2), 317-329. DOI: doi:10.1093/icb/icw038
• Cipriano, M. A. P., Lupatini, M., Santos, L., Silva, M. D., Roesch, L. F. W., Destefano, S.,... Kuramae, E. E. (2016). Lettuce and rhizosphere microbiome responses to growth promoting Pseudomonas species under field conditions. FEMS Microbiology Ecology, 92(12), [fiw197]. DOI: doi:10.1093/femsec/fiw197
• Sandrini, G., Ji, X., Verspagen, J. M. H., Tann, R. P., Slot, P. C., Luimstra, V. M.,... Huisman, J. (2016). Rapid adaptation of harmful cyanobacteria to rising CO2. Proceedings of the National Academy of Sciences of the United States of America, 113(33), 9315-9320. DOI: doi:10.1073/pnas.1602435113
• Nuijten, R. J. M., Hendriks, A. J., Jenssen, B. M., & Schipper, A. M. (2016). Circumpolar contaminant concentrations in polar bears (Ursus maritimus) and potential population-level effects. Marine Environmental Research, 151, 50-57. DOI: doi:10.1016/j.envres.2016.07.021
• Nguyen, D., Melnik, A. V., Koyama, N., Lu, X., Schorn, M., Fang, J.,... Dorrestein, P. C. (2016). Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides. 2, [16197]. DOI: doi:10.1038/nmicrobiol.2016.197
• Harvey, J. A., Hengeveld, E., & Malčická, M. (2016). The cabbage moth or the sorrel moth (Lepidoptera: Noctuidae)? European Journal of Entomology, 113(1), 320-324. DOI: doi:10.14411/eje.2016.041
• Yagüe, P., Willemse, J., Koning, R. I., Rioseras, B., López-García, M. T., Gonzalez-Quiñonez, N.,... Manteca, Á. (2016). Subcompartmentalization by cross-membranes during early growth of Streptomyces hyphae. Nature Communications, 7, 12467 EP -. DOI: doi:10.1038/ncomms12467
• Veraart, A. J., Dimitrov, M., Schrier-Uijl, A. P., Smidt, H., & de Klein, J. J. M. (2016). Abundance, activity and community structure of denitrifiers in drainage ditches, in relation to sediment characteristics, vegetation and land-use. Ecosystems, in press. DOI: doi:10.1007/s10021-016-0083-y
• Reis Lucheta, A., Souza Cannavan, F. S., Tsai, S. M., & Kuramae, E. E. (2017). Soil Fraction and Black Carbon Particles of Amazonian Dark Earth Harbor Different Fungal Abundance and Diversity. in press. DOI: doi:10.1016/S1002-0160(17)60415-6
• Hussner, A., Stiers, I., Verhofstad, M. J. J. M., Bakker, E. S., Grutters, B. M. C., Haury, J.,... Hofstra, D. (2017). Management and control methods of invasive alien freshwater aquatic plants: a review. Aquatic Botany, 136(January), 112-137. DOI: doi:10.1016/j.aquabot.2016.08.002
• Rinkel, J., Rabe, P., Garbeva, P. V., & Dickschat, J. (2016). Lessons from 1,3-Hydride Shifts in Sesquiterpene Cyclizations. 55(43), 13593-13596. DOI: doi:10.1002/anie.201608042
• Ferreira de Carvalho, J. L., de Jager, V. C. L., Van Gurp, T. P., Wagenmaker, N., & Verhoeven, K. J. F. (2016). Recent and dynamic transposable elements contribute to genomic divergence under asexuality. BMC Genomics, 17, [884]. DOI: doi:10.1186/s12864-016-3234-9
• Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W., & Garbeva, P. V. (2017). The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators. ISME Journal, 11, 817-820. DOI: doi:10.1038/ismej.2016.144
• van der Putten, W. H., Bradford, M., Brinkman, E. P., van de Voorde, T. F. J., & Veen, G. F. (2016). Where, when and how plant-soil feedback matters in a changing world. Functional Ecology, 30(7), 1109-1121. DOI: doi:10.1111/1365-2435.12657
• Zhu, F., Lammers, M., Harvey, J. A., & Poelman, E. H. (2016). Intrinsic competition between primary hyperparasitoids of the solitary endoparasitoid Cotesia rubecula. Ecological Entomology, 41(3), 292-300. DOI: doi:10.1111/een.12303
• Glick, H. B., Bettigole, C., Maynard, D. S., Covey, K. R., Smith, J. R., & Crowther, T. W. (2016). Spatially-explicit models of global tree density. 3, [2016.69]. DOI: doi:10.1038/sdata.2016.69
• Visser, B., Le Lann, C., Snaas, H., Verdeny-Vilalta, O., & Harvey, J. A. (2016). Divergent life history strategies in congeneric hyperparasitoids. Evolutionary Ecology, 30(3), 535-549. DOI: doi:10.1007/s10682-016-9819-6
• Van Gerven, L. P. A., Kuiper, J. J., Janse, J. H., Janssen, A. B. G., Jeuken, M., Mooij, W. M., & de Klein, J. J. M. (2017). How regime shifts in connected aquatic ecosystems are affected by the typical downstream increase of water flow. Ecosystems, 20(4), 733-744. DOI: doi:10.1007/s10021-016-0061-4
• Ma, H., Bai, G., Sun, Y., Kostenko, O., Zhu, X., Lin, S.,... Bezemer, T. M. B. (2016). Opposing Effects of Nitrogen and Water addition on Soil Bacterial and Fungal Communities in the Inner Mongolia steppe: a field experiment. Applied Soil Ecology, 108, 128-135. DOI: doi:10.1016/j.apsoil.2016.08.008
• Kleyheeg, E., Klaassen, M. R. J., & Soons, M. B. (2016). Seed dispersal potential by wild mallard duck as estimated from digestive tract analysis. Freshwater Biology, 61(10), 1746-1758. DOI: doi:10.1111/fwb.12814
• Li, Q., Yang, Y., Bao, X., Zhu, J., Liang, W., & Bezemer, T. M. (2016). Cultivar specific plant-soil feedback overrules soil legacy effects of elevated ozone in a rice-wheat rotation system. Agriculture, Ecosystems and Environment, 232, 85-92. DOI: doi:10.1016/j.agee.2016.07.025
• Reed, T. E., Gienapp, P., & Visser, M. E. (2016). Testing for biases in selection on avian reproductive traits and partitioning direct and indirect selection using quantitative genetic models. Evolution, 70(10), 2211-2225. DOI: doi:10.1111/evo.13017
• Mulder, H. A., Gienapp, P., & Visser, M. E. (2016). Genetic variation in variability: phenotypic variability of fledging weight and its evolution in a songbird population. Evolution, 70(9), 2004-2016. DOI: doi:10.1111/evo.13008
• Ruuskanen, S., Gienapp, P., Groothuis, T. G. G., Schaper, S. V., Darras, V. M., Pereira, C.,... Visser, M. E. (2016). Heritable variation in maternally derived yolk androgens, thyroid hormones and immune factors. Heredity, 117, 184-190. DOI: doi:10.1038/hdy.2016.49
• Ruuskanen, S., Groothuis, T. G. G., Schaper, S. V., Darras, V. M., de Vries, B., & Visser, M. E. (2016). Temperature-induced variation in yolk androgen and thyroid hormone levels in avian eggs. General and Comparative Endocrinology, 235, 29-37. DOI: doi:10.1016/j.ygcen.2016.05.026
• Visser, M. E. (2016). Phenology: Interactions of climate change and species. Nature, 535(7611), 236-237. DOI: doi:10.1038/nature18905
• Ho, A., Angel, R., Veraart, A. J., Daebeler, A., Jia, Z., Kim, S. Y.,... Bodelier, P. L. E. (2016). Biotic interactions in microbial communities as modulators of biogeochemical processes: Methanotrophy as a model system. Frontiers in Microbiology, 7, [1285]. DOI: doi:10.3389/fmicb.2016.01285
• Sæther, B-E., Grøtan, V., Engen, S., Coulson, T., Grant, P. R., Visser, M. E.,... Weimerskirch, H. (2016). Demographic routes to variability and regulation in bird populations. Nature Communications, 7, 12001. DOI: doi:10.1038/ncomms12001
• Schulz-Bohm, K., Tyc, O., Boer, W. D., Peereboom, N., Debets, F., Zaagman, N.,... Garbeva, P. (2017). Fungus-associated bacteriome in charge of their host behaviour. Fungal Genetics and Biology, 102, 38-48. DOI: doi:10.1016/j.fgb.2016.07.011
• Fei, M., Harvey, J. A., Weldegergis, B., Huang, T., Reijngoudt, K., Vet, L. E. M., & Gol, R. (2016). Integrating insect life history and food plant phenology: flexible maternal choice is adaptive. 17(8), [1263]. DOI: doi:10.3390/ijms17081263
• Lameris, T. K., Bennett, J. R., Blight, L. K., Giesen, M., Janssen, M. H., Schaminée, J. J. H. J.,... Koh, L. P. (Ed.) (2016). A century of ecosystem change: human and seabird impacts on plant species extirpation and invasion on islands. PeerJ, 4, e2208. DOI: doi:10.7717/peerj.2208
• Poorter, H., Fiorani, F., Pieruschka, R., Wojciechowski, T., van der Putten, W. H., Kleyer, M.,... Postma, J. (2016). Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field. New Phytologist, 212(4), 838-855. DOI: doi:10.1111/nph.14243
• Cortois, R., Schröder-Georgi, T., Weigelt, A., van der Putten, W. H., & De Deyn, G. B. (2016). Plant-soil feedbacks: role of plant functional group and plant traits. Journal of Ecology, 104(6), 1608-1617. DOI: doi:10.1111/1365-2745.12643
• Bosmans, L., De Bruijn, I., de Mot, R., Readers, H., & Lievens, B. (2016). Agar composition affects in vitro screening of biocontrol activity of antagonistic microorganisms. Journal of Microbiological Methods, 127, 7-9. DOI: doi:10.1016/j.mimet.2016.05.004
• Ho, A., Lueke, C., Reim, A., & Frenzel, P. (2016). Resilience of (seed bank) aerobic methanotrophs and methanotrophic activity to desiccation and heat stress. Soil Biology & Biochemistry, 101(October), 130-138. DOI: doi:10.1016/j.soilbio.2016.07.015
• Tripathi, B. M., Edwards, D. P., Mendes, L. W., Kim, M., Dong, K., Kim, H., & Adams, J. M. (2016). The impact of tropical forest logging and oil palm agriculture on the soil microbiome. Molecular Ecology, 25(10), 2244-2257. DOI: doi:10.1111/mec.13620
• Ger, K. A., Urrutia-Cordero, P., Frost, P. C., Hansson, L. A., Sarnelle, O., Wilson, A. E., & Lurling, M. (2016). The interaction between cyanobacteria and zooplankton in a more eutrophic world. Harmful Algae, 54, 128-144. DOI: doi:10.1016/j.hal.2015.12.005
• Harvey, J. A., Ode, P. J., Malčická, M., & Gols, R. (2016). Short-term seasonal habitat facilitation mediated by an insect herbivore. Basic and Applied Ecology, 17(5), 447-454. DOI: doi:10.1016/j.baae.2016.03.005
• Magdaraog, P. M., Tanaka, T., & Harvey, J. A. (2016). WASP-ASSOCIATED FACTORS ACT IN INTERSPECIES COMPETITION DURING MULTIPARASITISM. Archives of Insect Biochemistry and Physiology, 92(2), 87-107. DOI: doi:10.1002/arch.21321
• Lurling, M., Mackay, E. B., Reitzel, K., & Spears, B. M. (2016). Editorial - A critical perspective on geo-engineering for eutrophication management in lakes. Water Research, 97, 1-10. DOI: doi:10.1016/j.watres.2016.03.035
• Waajen, G., van Oosterhout, F., Douglas, G., & Lurling, M. (2016). Geo-engineering experiments in two urban ponds to control eutrophication. Water Research, 97, 69-82. DOI: doi:10.1016/j.watres.2015.11.070
• Bradford, M. A., Wieder, W. R., Bonan, G. B., Fierer, N., Raymond, P. A., & Crowther, T. W. (2016). Managing uncertainty in soil carbon feedbacks to climate change. Nature Climate Change, 6, 751-758. DOI: doi:10.1038/nclimate3071
• Soares, J. R., Cassman, N., Kielak, A. M., Pijl, A. S., do Carmo, J. B., Lourenço, K. S.,... Kuramae, E. E. (2016). Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil. Scientific Reports, 6, [30349]. DOI: doi:10.1038/srep30349
• Hessen, D. O., Tombre, I. M., Van Geest, G. J., & Alfsnes, K. (2017). Global change and ecosystem connectivity: How geese link fields of central Europe to eutrophication of Arctic freshwaters. Ambio, 46(1), 40-47. DOI: doi:10.1007/s13280-016-0802-9
• Faassen, E. J. (2016). The neurotoxin BMAA in aquatic systems : analysis, occurrence and effects (PhD Thesis)