Publications
2019
Garbeva, P., & Weisskopf, L. (2019). Airborne medicine - Bacterial volatiles and their influence on plant health. New Phytologist, Online. https://doi.org/10.1111/nph.16282Janssens, T. K. S., Tyc, O., Besselink, H., De Boer, W., & Garbeva, P. V. (2019). Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine. FEMS Microbiology Letters, [fnz023]. https://doi.org/10.1093/femsle/fnz023de Boer, J., Busula, A. O., ten Berge, J., & van Dijk, T. S. (2019). Does artemether–lumefantrine administration affect mosquito olfactory behaviour and fitness? Malaria Journal, 18(28). https://doi.org/10.1186/s12936-019-2646-9Cordovez, V., Dini-Andreote, F., Carrión, V. J., & Raaijmakers, J. M. (2019). Ecology and Evolution of Plant Microbiomes. Annual Review of Microbiology, Online. https://doi.org/10.1146/annurev-micro-090817-062524Qi, Y., Ossowicki, A., Yang, X., Huerta Lwanga, E., Dini-Andreote, F., Geissen, V., & Garbeva, P. (2019). Effects of plastic mulch film residues on wheat rhizosphere and soil properties. Journal of Hazardous Materials, Online. https://doi.org/10.1016/j.jhazmat.2019.121711Cusumano, A., Harvey, J. A., Bourne, M. E., Poelman, E. H., & de Boer, J. G. (2019). Exploiting chemical ecology to manage hyperparasitoids in biological control of arthropod pests. Pest Management Science, Online. https://doi.org/10.1002/ps.5679Silva, G. H. R., Sueitt, A. P. E., Haimes, S., Tripidaki, A., van Zwieten, R., & Fernandes, T. V. (2019). Feasibility of closing nutrient cycles from black water by microalgae-based technology. Algal Research, 44. https://doi.org/10.1016/j.algal.2019.101715Masteling, R., Lombard, L., De Boer, W., Raaijmakers, J. M., & Dini-Andreote, F. (2019). Harnessing the microbiome to control plant parasitic weeds. Current Opinion in Microbiology, 49(June), 26-33. https://doi.org/10.1016/j.mib.2019.09.006Cusumano, A., Harvey, J. A., Dicke, M., & Poelman, E. H. (2019). Hyperparasitoids exploit herbivore-induced plant volatiles during host location to assess host quality and non-host identity. Oecologia, 189(3), 699-709. https://doi.org/10.1007/s00442-019-04352-wKruidhof, H. M., Kostenko, O., Smid, H. M., & Vet, L. E. M. (2019). Integrating Parasitoid Olfactory Conditioning in Augmentative Biological Control: Potential Impact, Possibilities, and Challenges. Frontiers in Ecology and Evolution, 7, [fevo.2019.00084]. https://doi.org/10.3389/fevo.2019.00084Schmidt, R. L., Ulanova, D., Wick, L. Y., Bode, H. B., & Garbeva, P. V. (2019). Microbe-driven chemical ecology – past, present and future. ISME Journal, 13, 2656-2663. https://doi.org/10.1038/s41396-019-0469-xCassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2019). Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil. Environmental Microbiology, 21(4), 1241-1254. https://doi.org/10.1111/1462-2920.14557De Boer, W., Li, X. G., Meisner, A., & Garbeva, P. V. (2019). Pathogen suppression by microbial volatile organic compounds in soils. FEMS Microbiology Ecology, 95(8), [fiz105]. https://doi.org/10.1093/femsec/fiz105de Tender, C., Mesuere, B., van der Jeugt, F., Haegeman, A., Ruttink, T., Vandecasteele, B.,... Kuramae, E. E. (2019). Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome. Scientific Reports, 9. https://doi.org/10.1038/s41598-019-46106-xMartín-Sánchez, L., Saurabh Singh, K., Avalos Garcia, M., van Wezel, G. P., Dickschat, J. S., & Garbeva, P. V. (2019). Phylogenomic analyses and distribution of terpene synthases among Streptomyces. Beilstein Journal of Organic Chemistry, 15, 1181–1193. https://doi.org/10.3762/bjoc.15.115Heinen, R., Biere, A., & Bezemer, T. M. (2019). Plant traits shape soil legacy effects on individual plant-insect interactions. Oikos, Online. https://doi.org/10.1111/oik.06812Avalos, M., Garbeva, P., Raaijmakers, J. M., & van Wezel, G. P. (2019). Production of glycine-derived ammonia as a low-cost and long-distance antibiotic strategy by Streptomyces. ISME Journal, Online. https://doi.org/10.1101/450833, https://doi.org/10.1038/s41396-019-0537-2Wang, M., Ruan, W., Kostenko, O., Carvalho, S., Hannula, S. E., Mulder, P. P. J.,... Bezemer, T. M. (2019). Removal of soil biota alters soil feedback effects on plant growth and defense chemistry. New Phytologist, 221(3), 1478-1491. https://doi.org/10.1111/nph.15485Heinen, R., & Harvey, J. A. (2019). Spatial and temporal diversity in hyperparasitoid communities of Cotesia glomerata on garlic mustard, Alliaria petiolata. Ecological Entomology, 44(3), 357-366. https://doi.org/10.1111/een.12710Tyc, O., Putra, R., Gols, R., Harvey, J. A., & Garbeva, P. (2019). The ecological role of bacterial seed endophytes associated with wild cabbage in the United Kingdom. MicrobiologyOpen, in press. https://doi.org/10.1002/mbo3.954Gols, R., Desurmont, G. A., & Harvey, J. A. (2019). Variation in Performance and Resistance to Parasitism of Plutella xylostella Populations. Insects, 10, [293]. https://doi.org/10.3390/insects10090293Acce
Li, X. G., Garbeva, P., Liu, X., Klein Gunnewiek, P. J. A., Clocchiatti, A., Hundscheid, M. P. J.,... De Boer, W. (Accepted/In press). Volatile-mediated antagonism of soil bacterial communities against fungi. Environmental Microbiology, Online. https://doi.org/10.1111/1462-2920.148082019
Goelen, T., Sobhy, I. S., Vanderaa, C., de Boer, J. G., Delvigne, F., Francis, F.,... Lievens, B. (2019). Volatiles of bacteria associated with parasitoid habitats elicit distinct olfactory responses in an aphid parasitoid and its hyperparasitoid. Functional Ecology, Online. https://doi.org/10.1111/1365-2435.135032018
Schulz-Bohm, K., Gerards, S., Hundscheid, M. P. J., Melenhorst, J., De Boer, W., & Garbeva, P. V. (2018). Calling from distance: Attraction of soil bacteria by plant root volatiles. ISME Journal, 12. https://doi.org/10.1038/s41396-017-0035-3Junker, R. R., Kuppler, J., Amo, L., Blande, J. D., Borges, R. M., van Dam, N. M.,... Köllner, T. G. (2018). Covariation and phenotypic integration in chemical communication displays: biosynthetic constraints and eco-evolutionary implications. New Phytologist, 220(3), 739-749. https://doi.org/10.1111/nph.14505Schmidt, R. L., Durling, M., de Jager, V. C. L., Menezes, R. C., Nordkvist, E., Svatos, A.,... Garbeva, P. V. (2018). Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum. FEMS Microbiology Ecology, 94(6), [fiy078]. https://doi.org/10.1093/femsec/fiy078Heinen, R., Biere, A., Harvey, J. A., & Bezemer, T. M. (2018). Effects of soil organisms on aboveground plant-insect interactions in the field: patterns, mechanisms and the role of methodology. Frontiers in Ecology and Evolution, [106]. https://doi.org/10.3389/fevo.2018.00106Geesink, P., Tyc, O., Küsel, K., Taubert, M., van de Velde, C., Kumar, S., & Garbeva, P. V. (2018). Growth Promotion and Inhibition Induced by Interactions of Groundwater Bacteria. FEMS Microbiology Ecology, 94(11), [fiy164]. https://doi.org/10.1093/femsec/fiy164Goelen, T., Baets, D., Kos, M., Paulussen, C., Lenaerts, M., Rediers, H.,... Lievens, B. (2018). Gustatory response and longevity in Aphidius parasitoids and their hyperparasitoid Dendrocerus aphidum. Journal of Pest Science, Online. https://doi.org/10.1007/s10340-017-0907-3Avalos Garcia, M., van Wezel, G. P., Raaijmakers, J. M., & Garbeva, P. V. (2018). Healthy scents: microbial volatiles as new frontier in antibiotic research? Current Opinion in Microbiology, 45(October), 84-91. https://doi.org/10.1016/j.mib.2018.02.011Veraart, A. J., Garbeva, P. V., van Beersum, F., Ho, A., Hordijk, C. A., Meima-Franke, M.,... Bodelier, P. L. E. (2018). Living apart together – Bacterial volatiles influence methanotrophic growth and activity. ISME Journal, 12, 1163-1166. https://doi.org/10.1038/s41396-018-0055-7Etalo, D., Jeon, J-S., & Raaijmakers, J. M. (2018). Modulation of plant chemistry by beneficial root microbiota. Natural Product Reports, 35(5), 398-409. https://doi.org/10.1039/C7NP00057JHeinen, R., van der Sluijs, M., Biere, A., Harvey, J. A., & Bezemer, T. M. (2018). Plant community composition but not plant traits determine the outcome of soil legacy effects on plants and insects. Journal of Ecology, 106(3), 1217-1229. https://doi.org/10.1111/1365-2745.12907Robinson, A., Busula, A. O., Voets, M. A., Beshir, K. B., Caulfield, J. C., Powers, S. J.,... de Boer, J. G. (2018). Plasmodium-associated changes in human odor attract mosquitoes. Proceedings of the National Academy of Sciences of the United States of America, 115(18), E4209-E4218. https://doi.org/10.1073/pnas.1721610115Cordovez, V., Schop, S., Hordijk, C. A., Dupré de Boulois, H., Coppens, F., Hanssen, I.,... Carrion, V. J. (2018). Priming of plant growth promotion by volatile compounds of root-associated Microbacterium. Applied and Environmental Microbiology, 84(22), [e01865-18. ]. https://doi.org/10.1128/AEM.01865-18Yan, Q., Lopes, L. D., Schaffer, B. T., Kidarsa, T., Vining, O., Philmus, B.,... Loper, J. E. (2018). Secondary metabolism and interspecific competition affect accumulation of spontaneous mutants in the gacS/gacA regulatory system in Pseudomonas protegens. mBio, 9(1), [e01845-17]. https://doi.org/10.1128/mBio.01845-17Zhu, F., Heinen, R., van der Sluijs, M., Raaijmakers, C. E., Biere, A., & Bezemer, T. M. (2018). Species-specific plant soil feedbacks affect herbivore-induced gene expression and defense chemistry in Plantago lanceolata. Oecologia, 188(3), 801-811. https://doi.org/10.1007/s00442-018-4245-9Molinaro, F., Tyc, O., Beekwilder, J., Cankar, K., Bertea, C. M., Negre, M., & Garbeva, P. V. (2018). The effect of isabelin, a sesquiterpene lactone from Ambrosia artemisiifolia on soil microorganisms and human pathogens. FEMS Microbiology Letters, 365(4), [fny001]. https://doi.org/10.1093/femsle/fny0012017
Wilschut, R. A., Silva, J. C. P., Garbeva, P. V., & van der Putten, W. H. (2017). Belowground plant-herbivore interactions vary among climate-driven range-expanding plant species with different degrees of novel chemistry. Frontiers in Plant Science, 8, [fpls.2017.01861]. https://doi.org/10.3389/fpls.2017.01861Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L.,... Kuramae, E. E. (2017). Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications. Scientific Reports, 7, [41193]. https://doi.org/10.1038/srep41193Van der Meij, A., Worsley, S. F., Hutchings, M. I., & van Wezel, G. P. (2017). Chemical ecology of antibiotic production by actinomycetes. FEMS Microbiology Reviews, 41(3), 392-416. https://doi.org/10.1093/femsre/fux005Tyc, O., de Jager, V. C. L., Van den Berg, M., Gerards, S., Janssens, T., Zaagman, N.,... Garbeva, P. V. (2017). Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds. Microbial Biotechnology, 10(4), 910-925. https://doi.org/10.1111/1751-7915.12735Schmidt, R. L., de Jager, V. C. L., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K.,... Garbeva, P. V. (2017). Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Scientific Reports, 7, [862 ]. https://doi.org/10.1038/s41598-017-00893-3Schulz-Bohm, K., Tyc, O., De Boer, W., Peereboom, N., Debets, F., Zaagman, N.,... Garbeva, P. (2017). Fungus-associated bacteriome in charge of their host behaviour. Fungal Genetics and Biology, 102, 38-48. https://doi.org/10.1016/j.fgb.2016.07.011Geudens, N., Nasir, M. N., Crowet, J-M., Raaijmakers, J. M., Fehér, K., Coenye, T.,... Deleu, M. (2017). Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1859(3), 331-339. https://doi.org/10.1016/j.bbamem.2016.12.013Schulz-Bohm, K., Martín-Sánchez, L., & Garbeva, P. V. (2017). Microbial volatiles: Small molecules with an important role in intra- and inter-kingdom interactions. Frontiers in Microbiology, 8, [02484]. https://doi.org/10.3389/fmicb.2017.02484Cordovez, V., Mommer, L., Moisan, K., Lucas-Barbosa, D., Pierik, R., Mumm, R.,... Raaijmakers, J. M. (2017). Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani. Frontiers in Plant Science, 8, [01262]. https://doi.org/10.3389/fpls.2017.01262Bosmans, L., de Bruijn, I., Gerards, S., Moerkens, R., Van Looveren, L., Wittemans, L.,... Lievens, B. (2017). Potential for biocontrol of hairy root disease by a Paenibacillus clade. Frontiers in Microbiology, 8, [447]. https://doi.org/10.3389/fmicb.2017.00447Geisen, S., Mitchell, E. A. D., Wilkinson, D. M., Adl, S., Bonkowski, M., Brown, M. W.,... Lara, E. (2017). Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology & Biochemistry, 111, 94-103. https://doi.org/10.1016/j.soilbio.2017.04.001Pineda, A., Kaplan, I., & Bezemer, T. M. (2017). Steering soil microbiomes to suppress aboveground insect pests. Trends in Plant Science, 22(9), 770-778. https://doi.org/10.1016/j.tplants.2017.07.002Ossowicki, A., Jafra, S., & Garbeva, P. V. (2017). The Antimicrobial Volatile Power of the Rhizospheric Isolate Pseudomonas donghuensis P482. PLoS One, 12(3), [174362]. https://doi.org/10.1371/journal.pone.0174362Tyc, O., Song, C., Dickschat, J., Vos, M., & Garbeva, P. V. (2017). The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria. Trends in Microbiology, 25(4), 280-292. https://doi.org/10.1016/j.tim.2016.12.002Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W., & Garbeva, P. V. (2017). The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators. ISME Journal, 11, 817-820. https://doi.org/10.1038/ismej.2016.144Wang, M., Biere, A., van der Putten, W. H., Bezemer, T. M., & Brinkman, E. P. (2017). Timing of simulated aboveground herbivory influences population dynamics of root-feeding nematodes. Plant and Soil, 415(1-2), 215-228. https://doi.org/10.1007/s11104-016-3149-x2016
Faassen, E., Antoniou, M. G., Beekman-Lukassen, W., Blahova, L., Chernova, E., Christophoridis, C.,... Zguna, N. (2016). A Collaborative Evaluation of LC-MS/MS Based Methods for BMAA Analysis: Soluble Bound BMAA Found to Be an Important Fraction. Marine Drugs, 14(3). https://doi.org/10.3390/md14030045Bosmans, L., De Bruijn, I., de Mot, R., Readers, H., & Lievens, B. (2016). Agar composition affects in vitro screening of biocontrol activity of antagonistic microorganisms. Journal of Microbiological Methods, 127, 7-9. https://doi.org/10.1016/j.mimet.2016.05.004Huber, M., Epping, J., Schulze Gronover, C., Fricke, J., Aziz, Z., Brillatz, T.,... Erb, M. (2016). A Latex Metabolite Benefits Plant Fitness under Root Herbivore Attack. PLoS Biology, 14(1), e1002332 EP -. https://doi.org/10.1371/journal.pbio.1002332Amo, L., Dicke, M., & Visser, M. E. (2016). Are naive birds attracted to herbivore-induced plant defences? Behaviour, 153(3), 353-366. https://doi.org/10.1163/1568539X-00003345van Dam, N. M., Weinhold, A., & Garbeva, P. V. (2016). Calling in the Dark: the Role of Volatiles for Communication in the Rhizosphere. In Deciphering Chemical language of Plant Communication (pp. 175-210). (Signaling and Communication in Plants). Springer. https://doi.org/10.1007/978-3-319-33498-1_8Benelli, G., Daane, K. M., Soler, R., & Stoekl, J. (2016). Chemical Ecology of Parasitic Hymenoptera. BioMed Research International. https://doi.org/10.1155/2016/4298150Kos, M., & Poelman, E. H. (2016). Complexity of plant volatile-mediated interactions beyond the third trophic level. In J. D. Blande, & R. Glinwood [Eds.], Deciphering chemical language of plant communication (pp. 211-225). Springer. https://doi.org/10.1007/978-3-319-33498-1_9Ode, P. J., Harvey, J. A., Reichelt, M., Gershenzon, J., & Gols, R. (2016). Differential induction of plant chemical defenses by parasitized and unparasitized herbivores: consequences for reciprocal, multitrophic interactions. Oikos, 125(10), 1398-1407. https://doi.org/10.1111/oik.03076Ger, K. A., Faassen, E. J., Pennino, M. G., & Lurling, M. (2016). Effect of the toxin (microcystin) content of Microcystis on copepod grazing. Harmful Algae, 52, 34-45. https://doi.org/10.1016/j.hal.2015.12.008Liu, Y., Zachow, C., Raaijmakers, J. M., & De Bruijn, I. (2016). Elucidating the diversity of aquatic Microdochium and Trichoderma species and their activity against the fish pathogen Saprolegnia diclina. International Journal of Molecular Sciences, 17, [140]. https://doi.org/10.3390/ijms17010140Kolter, R., & van Wezel, G. P. (2016). Goodbye to brute force in antibiotic discovery? Nature Microbiology, 1, 15020. https://doi.org/10.1038/nmicrobiol.2015.20Fei, M., Harvey, J. A., Weldegergis, B., Huang, T., Reijngoudt, K., Vet, L. E. M., & Gol, R. (2016). Integrating insect life history and food plant phenology: flexible maternal choice is adaptive. International Journal of Molecular Sciences, 17(8), [1263]. https://doi.org/10.3390/ijms17081263Urem, M., Świątek-Połatyńska, M. A., Rigali, S., & van Wezel, G. P. (2016). Intertwining nutrient-sensory networks and the control of antibiotic production in Streptomyces. Molecular Microbiology, 102(2), 183-195. https://doi.org/10.1111/mmi.13464Baltz, R. H., Ikeda, H., Katz, L., Kim, E-S., van Wezel, G. P., & Wright, G. (2016). Introduction to the Special Issue: "Natural Product Discovery and Development in the Genomic Era": Editorial. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 109. https://doi.org/10.1007/s10295-015-1715-5Pangesti, N., Reichelt, M., van de Mortel, J. E., Kapsomenou, E., Gershenzon, J., van Loon, J. J. A.,... Pineda, A. (2016). Jasmonic Acid and Ethylene Signaling Pathways Regulate Glucosinolate Levels in Plants During Rhizobacteria-Induced Systemic Resistance Against a Leaf-Chewing Herbivore. Journal of Chemical Ecology, 42(12), 1212-1225. https://doi.org/10.1007/s10886-016-0787-7Rinkel, J., Rabe, P., Garbeva, P. V., & Dickschat, J. (2016). Lessons from 1,3-Hydride Shifts in Sesquiterpene Cyclizations. Angewandte Chemie, 55(43), 13593-13596. https://doi.org/10.1002/anie.201608042Song, C., Kidarsa, T., van de Mortel, J., Loper, J. E., & Raaijmakers, J. M. (2016). Living on the edge: emergence of spontaneous gac mutations in Pseudomonas protegens during swarming motility. Environmental Microbiology, 18(10), 3453-3465. https://doi.org/10.1111/1462-2920.13288Wu, C., Choi, Y. H., & van Wezel, G. P. (2016). Metabolic profiling as a tool for prioritizing antimicrobial compounds. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 299-312. https://doi.org/10.1007/s10295-015-1666-xSchmidt, R., Etalo, D. N., de Jager, V. C. L., Gerards, S., Zweers, H., De Boer, W., & Garbeva, P. V. (2016). Microbial small talk: volatiles in fungal-bacterial interactions. Frontiers in Microbiology, 6, [01495]. https://doi.org/10.3389/fmicb.2015.01495van Donk, E., Peacor, S., Grosser, K., De Senerpont Domis, L., & Lurling, M. (2016). Pharmaceuticals may disrupt the natural chemical information flows and species interactions in aquatic systems: ideas and perspectives on a hidden global change. In P. de Voogt [Ed.], Reviews of Environmental Contamination and Toxicology: Continuation of Residue Reviews (Vol. 238, pp. 91-105). (Reviews of Environmental Contamination and Toxicology). Springer. https://doi.org/10.1007/398_2015_5002Biere, A., & Goverse, A. (2016). Plant-mediated systemic interactions between pathogens, parasitic nematodes, and herbivores above- and belowground. Annual Review of Phytopathology, 54 , 499-527. https://doi.org/10.1146/annurev-phyto-080615-100245Cheng, X., Cordovez, V., Etalo, D. W., van der Voort, M., & Raaijmakers, J. M. (2016). Role of the GacS Sensor Kinase in the Regulation of Volatile Production by Plant Growth-Promoting Pseudomonas fluorescens SBW25. Frontiers in Plant Science, 7, 1706. https://doi.org/10.3389/fpls.2016.01706Weisskopf, L., Garbeva, P. V., Ryu, C-M., & Raaijmakers, J. M. (2016). Smelly fumes: volatile-mediated communication between bacteria and other organisms. Frontiers in Microbiology, 7, [2031]. https://doi.org/10.3389/fmicb.2016.02031Ballhausen, M-B., & De Boer, W. (2016). The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria. Soil Biology & Biochemistry, 102(November), 14-17. https://doi.org/10.1016/j.soilbio.2016.06.014Rangel, L. M., Ger, K. A., Silva, L. H. S., Soares, M. C. S., Faassen, E. J., & Lurling, M. (2016). Toxicity Overrides Morphology on Cylindrospermopsis raciborskii Grazing Resistance to the Calanoid Copepod Eudiaptomus gracilis. Microbial Ecology, 71(4), 835-844. https://doi.org/10.1007/s00248-016-0734-8Tyc, O., Tomás-Menor, L., Garbeva, P. V., Barrajón-Catalán, E., & Micol, V. (2016). Validation of the AlamarBlue® assay as a fast screening method to determine the antimicrobial activity of botanical extracts. PLoS One, 11(12), [e0169090]. https://doi.org/10.1371/journal.pone.0169090
