Publications
2019
Garbeva, P., & Weisskopf, L. (2019). Airborne medicine - Bacterial volatiles and their influence on plant health. New Phytologist, in press. https://doi.org/10.1111/nph.16282Janssens, T. K. S., Tyc, O., Besselink, H., De Boer, W., & Garbeva, P. V. (2019). Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine. FEMS Microbiology Letters, [fnz023]. https://doi.org/10.1093/femsle/fnz023de Boer, J., Busula, A. O., ten Berge, J., & van Dijk, T. S. (2019). Does artemether–lumefantrine administration affect mosquito olfactory behaviour and fitness? Malaria Journal, 18(28). https://doi.org/10.1186/s12936-019-2646-9Cordovez, V., Dini-Andreote, F., Carrión, V. J., & Raaijmakers, J. M. (2019). Ecology and Evolution of Plant Microbiomes. Annual Review of Microbiology, Online. https://doi.org/10.1146/annurev-micro-090817-062524Masteling, R., Lombard, L., De Boer, W., Raaijmakers, J. M., & Dini-Andreote, F. (2019). Harnessing the microbiome to control plant parasitic weeds. Current Opinion in Microbiology, 49(June), 26-33. https://doi.org/10.1016/j.mib.2019.09.006Cusumano, A., Harvey, J. A., Dicke, M., & Poelman, E. H. (2019). Hyperparasitoids exploit herbivore-induced plant volatiles during host location to assess host quality and non-host identity. Oecologia, 189(3), 699-709. https://doi.org/10.1007/s00442-019-04352-wKruidhof, H. M., Kostenko, O., Smid, H. M., & Vet, L. E. M. (2019). Integrating Parasitoid Olfactory Conditioning in Augmentative Biological Control: Potential Impact, Possibilities, and Challenges. Frontiers in Ecology and Evolution, 7, [fevo.2019.00084]. https://doi.org/10.3389/fevo.2019.00084Schmidt, R. L., Ulanova, D., Wick, L. Y., Bode, H. B., & Garbeva, P. V. (2019). Microbe-driven chemical ecology – past, present and future. ISME Journal, 13, 2656-2663. https://doi.org/10.1038/s41396-019-0469-xCassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2019). Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil. Environmental Microbiology, 21(4), 1241-1254. https://doi.org/10.1111/1462-2920.14557De Boer, W., Li, X. G., Meisner, A., & Garbeva, P. V. (2019). Pathogen suppression by microbial volatile organic compounds in soils. FEMS Microbiology Ecology, 95(8), [fiz105]. https://doi.org/10.1093/femsec/fiz105de Tender, C., Mesuere, B., van der Jeugt, F., Haegeman, A., Ruttink, T., Vandecasteele, B.,... Kuramae, E. E. (2019). Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome. Scientific Reports, 9. https://doi.org/10.1038/s41598-019-46106-xMartín-Sánchez, L., Saurabh Singh, K., Avalos Garcia, M., van Wezel, G. P., Dickschat, J. S., & Garbeva, P. V. (2019). Phylogenomic analyses and distribution of terpene synthases among Streptomyces. Beilstein Journal of Organic Chemistry, 15, 1181–1193. https://doi.org/10.3762/bjoc.15.115Heinen, R., Biere, A., & Bezemer, T. M. (2019). Plant traits shape soil legacy effects on individual plant-insect interactions. Oikos, Online. https://doi.org/10.1111/oik.06812Wang, M., Ruan, W., Kostenko, O., Carvalho, S., Hannula, S. E., Mulder, P. P. J.,... Bezemer, T. M. (2019). Removal of soil biota alters soil feedback effects on plant growth and defense chemistry. New Phytologist, 221(3), 1478-1491. https://doi.org/10.1111/nph.15485Heinen, R., & Harvey, J. A. (2019). Spatial and temporal diversity in hyperparasitoid communities of Cotesia glomerata on garlic mustard, Alliaria petiolata. Ecological Entomology, in press. https://doi.org/10.1111/een.12710Acce
Li, X. G., Garbeva, P., Liu, X., Klein Gunnewiek, P. J. A., Clocchiatti, A., Hundscheid, M. P. J.,... De Boer, W. (Accepted/In press). Volatile-mediated antagonism of soil bacterial communities against fungi. Environmental Microbiology, Online. https://doi.org/10.1111/1462-2920.148082018
Schulz-Bohm, K., Gerards, S., Hundscheid, M. P. J., Melenhorst, J., De Boer, W., & Garbeva, P. V. (2018). Calling from distance: Attraction of soil bacteria by plant root volatiles. ISME Journal, 12. https://doi.org/10.1038/s41396-017-0035-3Junker, R. R., Kuppler, J., Amo, L., Blande, J. D., Borges, R. M., van Dam, N. M.,... Köllner, T. G. (2018). Covariation and phenotypic integration in chemical communication displays: biosynthetic constraints and eco-evolutionary implications. New Phytologist, 220(3), 739-749. https://doi.org/10.1111/nph.14505Schmidt, R. L., Durling, M., de Jager, V. C. L., Menezes, R. C., Nordkvist, E., Svatos, A.,... Garbeva, P. V. (2018). Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum. FEMS Microbiology Ecology, 94(6), [fiy078]. https://doi.org/10.1093/femsec/fiy078Heinen, R., Biere, A., Harvey, J. A., & Bezemer, T. M. (2018). Effects of soil organisms on aboveground plant-insect interactions in the field: patterns, mechanisms and the role of methodology. Frontiers in Ecology and Evolution, [106]. https://doi.org/10.3389/fevo.2018.00106Geesink, P., Tyc, O., Küsel, K., Taubert, M., van de Velde, C., Kumar, S., & Garbeva, P. V. (2018). Growth Promotion and Inhibition Induced by Interactions of Groundwater Bacteria. FEMS Microbiology Ecology, 94(11), [fiy164]. https://doi.org/10.1093/femsec/fiy164Goelen, T., Baets, D., Kos, M., Paulussen, C., Lenaerts, M., Rediers, H.,... Lievens, B. (2018). Gustatory response and longevity in Aphidius parasitoids and their hyperparasitoid Dendrocerus aphidum. Journal of Pest Science, Online. https://doi.org/10.1007/s10340-017-0907-3Avalos Garcia, M., van Wezel, G. P., Raaijmakers, J. M., & Garbeva, P. V. (2018). Healthy scents: microbial volatiles as new frontier in antibiotic research? Current Opinion in Microbiology, 45(October), 84-91. https://doi.org/10.1016/j.mib.2018.02.011Veraart, A. J., Garbeva, P. V., van Beersum, F., Ho, A., Hordijk, C. A., Meima-Franke, M.,... Bodelier, P. L. E. (2018). Living apart together – Bacterial volatiles influence methanotrophic growth and activity. ISME Journal, 12, 1163-1166. https://doi.org/10.1038/s41396-018-0055-7Etalo, D., Jeon, J-S., & Raaijmakers, J. M. (2018). Modulation of plant chemistry by beneficial root microbiota. Natural Product Reports, 35(5), 398-409. https://doi.org/10.1039/C7NP00057JHeinen, R., van der Sluijs, M., Biere, A., Harvey, J. A., & Bezemer, T. M. (2018). Plant community composition but not plant traits determine the outcome of soil legacy effects on plants and insects. Journal of Ecology, 106(3), 1217-1229. https://doi.org/10.1111/1365-2745.12907Robinson, A., Busula, A. O., Voets, M. A., Beshir, K. B., Caulfield, J. C., Powers, S. J.,... de Boer, J. G. (2018). Plasmodium-associated changes in human odor attract mosquitoes. Proceedings of the National Academy of Sciences of the United States of America, 115(18), E4209-E4218. https://doi.org/10.1073/pnas.1721610115Cordovez, V., Schop, S., Hordijk, C. A., Dupré de Boulois, H., Coppens, F., Hanssen, I.,... Carrion, V. J. (2018). Priming of plant growth promotion by volatile compounds of root-associated Microbacterium. Applied and Environmental Microbiology, 84(22), [e01865-18. ]. https://doi.org/10.1128/AEM.01865-18Yan, Q., Lopes, L. D., Schaffer, B. T., Kidarsa, T., Vining, O., Philmus, B.,... Loper, J. E. (2018). Secondary metabolism and interspecific competition affect accumulation of spontaneous mutants in the gacS/gacA regulatory system in Pseudomonas protegens. mBio, 9(1), [e01845-17]. https://doi.org/10.1128/mBio.01845-17Zhu, F., Heinen, R., van der Sluijs, M., Raaijmakers, C. E., Biere, A., & Bezemer, T. M. (2018). Species-specific plant soil feedbacks affect herbivore-induced gene expression and defense chemistry in Plantago lanceolata. Oecologia, 188(3), 801-811. https://doi.org/10.1007/s00442-018-4245-9Molinaro, F., Tyc, O., Beekwilder, J., Cankar, K., Bertea, C. M., Negre, M., & Garbeva, P. V. (2018). The effect of isabelin, a sesquiterpene lactone from Ambrosia artemisiifolia on soil microorganisms and human pathogens. FEMS Microbiology Letters, 365(4), [fny001]. https://doi.org/10.1093/femsle/fny0012017
Wilschut, R. A., Silva, J. C. P., Garbeva, P. V., & van der Putten, W. H. (2017). Belowground plant-herbivore interactions vary among climate-driven range-expanding plant species with different degrees of novel chemistry. Frontiers in Plant Science, 8, [fpls.2017.01861]. https://doi.org/10.3389/fpls.2017.01861Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L.,... Kuramae, E. E. (2017). Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications. Scientific Reports, 7, [41193]. https://doi.org/10.1038/srep41193Van der Meij, A., Worsley, S. F., Hutchings, M. I., & van Wezel, G. P. (2017). Chemical ecology of antibiotic production by actinomycetes. FEMS Microbiology Reviews, 41(3), 392-416. https://doi.org/10.1093/femsre/fux005Tyc, O., de Jager, V. C. L., Van den Berg, M., Gerards, S., Janssens, T., Zaagman, N.,... Garbeva, P. V. (2017). Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds. Microbial Biotechnology, 10(4), 910-925. https://doi.org/10.1111/1751-7915.12735Schmidt, R. L., de Jager, V. C. L., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K.,... Garbeva, P. V. (2017). Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Scientific Reports, 7, [862 ]. https://doi.org/10.1038/s41598-017-00893-3Schulz-Bohm, K., Tyc, O., De Boer, W., Peereboom, N., Debets, F., Zaagman, N.,... Garbeva, P. (2017). Fungus-associated bacteriome in charge of their host behaviour. Fungal Genetics and Biology, 102, 38-48. https://doi.org/10.1016/j.fgb.2016.07.011Geudens, N., Nasir, M. N., Crowet, J-M., Raaijmakers, J. M., Fehér, K., Coenye, T.,... Deleu, M. (2017). Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1859(3), 331-339. https://doi.org/10.1016/j.bbamem.2016.12.013Schulz-Bohm, K., Martín-Sánchez, L., & Garbeva, P. V. (2017). Microbial volatiles: Small molecules with an important role in intra- and inter-kingdom interactions. Frontiers in Microbiology, 8, [02484]. https://doi.org/10.3389/fmicb.2017.02484Cordovez, V., Mommer, L., Moisan, K., Lucas-Barbosa, D., Pierik, R., Mumm, R.,... Raaijmakers, J. M. (2017). Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani. Frontiers in Plant Science, 8, [01262]. https://doi.org/10.3389/fpls.2017.01262Bosmans, L., de Bruijn, I., Gerards, S., Moerkens, R., Van Looveren, L., Wittemans, L.,... Lievens, B. (2017). Potential for biocontrol of hairy root disease by a Paenibacillus clade. Frontiers in Microbiology, 8, [447]. https://doi.org/10.3389/fmicb.2017.00447Geisen, S., Mitchell, E. A. D., Wilkinson, D. M., Adl, S., Bonkowski, M., Brown, M. W.,... Lara, E. (2017). Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology & Biochemistry, 111, 94-103. https://doi.org/10.1016/j.soilbio.2017.04.001Pineda, A., Kaplan, I., & Bezemer, T. M. (2017). Steering soil microbiomes to suppress aboveground insect pests. Trends in Plant Science, 22(9), 770-778. https://doi.org/10.1016/j.tplants.2017.07.002Ossowicki, A., Jafra, S., & Garbeva, P. V. (2017). The Antimicrobial Volatile Power of the Rhizospheric Isolate Pseudomonas donghuensis P482. PLoS One, 12(3), [174362]. https://doi.org/10.1371/journal.pone.0174362Tyc, O., Song, C., Dickschat, J., Vos, M., & Garbeva, P. V. (2017). The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria. Trends in Microbiology, 25(4), 280-292. https://doi.org/10.1016/j.tim.2016.12.002Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W., & Garbeva, P. V. (2017). The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators. ISME Journal, 11, 817-820. https://doi.org/10.1038/ismej.2016.144Wang, M., Biere, A., van der Putten, W. H., Bezemer, T. M., & Brinkman, E. P. (2017). Timing of simulated aboveground herbivory influences population dynamics of root-feeding nematodes. Plant and Soil, 415(1-2), 215-228. https://doi.org/10.1007/s11104-016-3149-x2016
Faassen, E., Antoniou, M. G., Beekman-Lukassen, W., Blahova, L., Chernova, E., Christophoridis, C.,... Zguna, N. (2016). A Collaborative Evaluation of LC-MS/MS Based Methods for BMAA Analysis: Soluble Bound BMAA Found to Be an Important Fraction. Marine Drugs, 14(3). https://doi.org/10.3390/md14030045Bosmans, L., De Bruijn, I., de Mot, R., Readers, H., & Lievens, B. (2016). Agar composition affects in vitro screening of biocontrol activity of antagonistic microorganisms. Journal of Microbiological Methods, 127, 7-9. https://doi.org/10.1016/j.mimet.2016.05.004Huber, M., Epping, J., Schulze Gronover, C., Fricke, J., Aziz, Z., Brillatz, T.,... Erb, M. (2016). A Latex Metabolite Benefits Plant Fitness under Root Herbivore Attack. PLoS Biology, 14(1), e1002332 EP -. https://doi.org/10.1371/journal.pbio.1002332Amo, L., Dicke, M., & Visser, M. E. (2016). Are naive birds attracted to herbivore-induced plant defences? Behaviour, 153(3), 353-366. https://doi.org/10.1163/1568539X-00003345van Dam, N. M., Weinhold, A., & Garbeva, P. V. (2016). Calling in the Dark: the Role of Volatiles for Communication in the Rhizosphere. In Deciphering Chemical language of Plant Communication (pp. 175-210). (Signaling and Communication in Plants). Springer. https://doi.org/10.1007/978-3-319-33498-1_8Benelli, G., Daane, K. M., Soler, R., & Stoekl, J. (2016). Chemical Ecology of Parasitic Hymenoptera. BioMed Research International. https://doi.org/10.1155/2016/4298150Kos, M., & Poelman, E. H. (2016). Complexity of plant volatile-mediated interactions beyond the third trophic level. In J. D. Blande, & R. Glinwood [Eds.], Deciphering chemical language of plant communication (pp. 211-225). Springer. https://doi.org/10.1007/978-3-319-33498-1_9Ode, P. J., Harvey, J. A., Reichelt, M., Gershenzon, J., & Gols, R. (2016). Differential induction of plant chemical defenses by parasitized and unparasitized herbivores: consequences for reciprocal, multitrophic interactions. Oikos, 125(10), 1398-1407. https://doi.org/10.1111/oik.03076Ger, K. A., Faassen, E. J., Pennino, M. G., & Lurling, M. (2016). Effect of the toxin (microcystin) content of Microcystis on copepod grazing. Harmful Algae, 52, 34-45. https://doi.org/10.1016/j.hal.2015.12.008Liu, Y., Zachow, C., Raaijmakers, J. M., & De Bruijn, I. (2016). Elucidating the diversity of aquatic Microdochium and Trichoderma species and their activity against the fish pathogen Saprolegnia diclina. International Journal of Molecular Sciences, 17, [140]. https://doi.org/10.3390/ijms17010140Kolter, R., & van Wezel, G. P. (2016). Goodbye to brute force in antibiotic discovery? Nature Microbiology, 1, 15020. https://doi.org/10.1038/nmicrobiol.2015.20Fei, M., Harvey, J. A., Weldegergis, B., Huang, T., Reijngoudt, K., Vet, L. E. M., & Gol, R. (2016). Integrating insect life history and food plant phenology: flexible maternal choice is adaptive. International Journal of Molecular Sciences, 17(8), [1263]. https://doi.org/10.3390/ijms17081263Urem, M., Świątek-Połatyńska, M. A., Rigali, S., & van Wezel, G. P. (2016). Intertwining nutrient-sensory networks and the control of antibiotic production in Streptomyces. Molecular Microbiology, 102(2), 183-195. https://doi.org/10.1111/mmi.13464Baltz, R. H., Ikeda, H., Katz, L., Kim, E-S., van Wezel, G. P., & Wright, G. (2016). Introduction to the Special Issue: "Natural Product Discovery and Development in the Genomic Era": Editorial. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 109. https://doi.org/10.1007/s10295-015-1715-5Pangesti, N., Reichelt, M., van de Mortel, J. E., Kapsomenou, E., Gershenzon, J., van Loon, J. J. A.,... Pineda, A. (2016). Jasmonic Acid and Ethylene Signaling Pathways Regulate Glucosinolate Levels in Plants During Rhizobacteria-Induced Systemic Resistance Against a Leaf-Chewing Herbivore. Journal of Chemical Ecology, 42(12), 1212-1225. https://doi.org/10.1007/s10886-016-0787-7Rinkel, J., Rabe, P., Garbeva, P. V., & Dickschat, J. (2016). Lessons from 1,3-Hydride Shifts in Sesquiterpene Cyclizations. Angewandte Chemie, 55(43), 13593-13596. https://doi.org/10.1002/anie.201608042Song, C., Kidarsa, T., van de Mortel, J., Loper, J. E., & Raaijmakers, J. M. (2016). Living on the edge: emergence of spontaneous gac mutations in Pseudomonas protegens during swarming motility. Environmental Microbiology, 18(10), 3453-3465. https://doi.org/10.1111/1462-2920.13288Wu, C., Choi, Y. H., & van Wezel, G. P. (2016). Metabolic profiling as a tool for prioritizing antimicrobial compounds. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 299-312. https://doi.org/10.1007/s10295-015-1666-xSchmidt, R., Etalo, D. N., de Jager, V. C. L., Gerards, S., Zweers, H., De Boer, W., & Garbeva, P. V. (2016). Microbial small talk: volatiles in fungal-bacterial interactions. Frontiers in Microbiology, 6, [01495]. https://doi.org/10.3389/fmicb.2015.01495van Donk, E., Peacor, S., Grosser, K., De Senerpont Domis, L., & Lurling, M. (2016). Pharmaceuticals may disrupt the natural chemical information flows and species interactions in aquatic systems: ideas and perspectives on a hidden global change. In P. de Voogt [Ed.], Reviews of Environmental Contamination and Toxicology: Continuation of Residue Reviews (Vol. 238, pp. 91-105). (Reviews of Environmental Contamination and Toxicology). Springer. https://doi.org/10.1007/398_2015_5002Biere, A., & Goverse, A. (2016). Plant-mediated systemic interactions between pathogens, parasitic nematodes, and herbivores above- and belowground. Annual Review of Phytopathology, 54 , 499-527. https://doi.org/10.1146/annurev-phyto-080615-100245Cheng, X., Cordovez, V., Etalo, D. W., van der Voort, M., & Raaijmakers, J. M. (2016). Role of the GacS Sensor Kinase in the Regulation of Volatile Production by Plant Growth-Promoting Pseudomonas fluorescens SBW25. Frontiers in Plant Science, 7, 1706. https://doi.org/10.3389/fpls.2016.01706Weisskopf, L., Garbeva, P. V., Ryu, C-M., & Raaijmakers, J. M. (2016). Smelly fumes: volatile-mediated communication between bacteria and other organisms. Frontiers in Microbiology, 7, [2031]. https://doi.org/10.3389/fmicb.2016.02031Ballhausen, M-B., & De Boer, W. (2016). The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria. Soil Biology & Biochemistry, 102(November), 14-17. https://doi.org/10.1016/j.soilbio.2016.06.014Rangel, L. M., Ger, K. A., Silva, L. H. S., Soares, M. C. S., Faassen, E. J., & Lurling, M. (2016). Toxicity Overrides Morphology on Cylindrospermopsis raciborskii Grazing Resistance to the Calanoid Copepod Eudiaptomus gracilis. Microbial Ecology, 71(4), 835-844. https://doi.org/10.1007/s00248-016-0734-8Tyc, O., Tomás-Menor, L., Garbeva, P. V., Barrajón-Catalán, E., & Micol, V. (2016). Validation of the AlamarBlue® assay as a fast screening method to determine the antimicrobial activity of botanical extracts. PLoS One, 11(12), [e0169090]. https://doi.org/10.1371/journal.pone.0169090
