Publications

Theses

Soil Legacy effects on aboveground plant-insect interactions

Thesis

Wednesday, 4 December, 2019

The mechanisms underlying seasonal timing of breeding - a multi-level approachusing bi-directional genomic selection on timing of egg-laying

Thesis

Friday, 8 November, 2019

more theses

Recent scientific publications (2015 - )

For more information, please contact the NIOO library

Kuramae, E. E., & de Assis Costa, O. Y. (2019). Acidobacteria. In T. M. Schmidt [Ed.], Encyclopedia of Microbiology (Fourth Edition) (pp. 1-8). Oxford: Academic Press. https://doi.org/10.1016/B978-0-12-809633-8.20780-2

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S.,... Bacher, S. (2019). A Conceptual Framework for Range-Expanding Species that Track Human-Induced Environmental Change. BioScience, 69(11), 908-919. https://doi.org/10.1093/biosci/biz101

Radchuk, V., Reed, T., Teplitsky, C., van de Pol, M., Charmantier, A., Hassall, C.,... Kramer-Schadt, S. (2019). Adaptive responses of animals to climate change are most likely insufficient. Nature Communications, 10(3109), [3109]. https://doi.org/10.1038/s41467-019-10924-4

Evans, T., Salvatore, D., Van de Pol, M., & Musters, K. (2019). Adult firefly abundance is linked to weather during the larval stage in the previous year. Ecological Entomology, 44(2), 265-273. https://doi.org/10.1111/een.12702

Chang, M., Teurlincx, S., DeAngelis, D. L., Janse, J. H., Troost, T. A., van Wijk, D.,... Janssen, A. B. G. (2019). A generically parameterized model of Lake eutrophication (GPLake) that links field-, lab- and model-based knowledge. Science of the Total Environment, 695, [133887]. https://doi.org/10.1016/j.scitotenv.2019.133887

Madsen, J., Jaspers, J., Frikke, J., Gundersen, O. M., Nolet, B. A., Nolet, K.,... De Vries, P. P. (2019). A gloomy future for light-bellied brent geese in Tusenøyane, Svalbard, under a changing predator regime. Polar Research, 38, [3393]. https://doi.org/10.33265/polar.v38.3393

Garbeva, P., & Weisskopf, L. (2019). Airborne medicine - Bacterial volatiles and their influence on plant health. New Phytologist, in press. https://doi.org/10.1111/nph.16282

Kurm, V., Geisen, S., & Hol, W. H. G. (2019). A low proportion of rare bacterial taxa responds to abiotic changes compared with dominant taxa. Environmental Microbiology, 21(2), 750-758. https://doi.org/10.1111/1462-2920.14492

Snoek, B. L., Volkers, R. J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G.,... Kammenga, J. E. (2019). A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits. BMC Biology, 17. https://doi.org/10.1186/s12915-019-0642-8

Seelen, L. M. S., Flaim, G., Keuskamp, J., Teurlincx, S., Font, R. A., Tolunay, D.,... de Senerpont Domis, L. N. (2019). An affordable and reliable assessment of aquatic decomposition: Tailoring the Tea Bag Index to surface waters. Water Research, 151(15 March 2019), 31-43. https://doi.org/10.1016/j.watres.2018.11.081

Giling, D. P., Beaumelle, L., Phillips, H. R. P., Cesarz, S., Eisenhauer, N., Ferlian, O.,... Barnes, A. D. (2019). A niche for ecosystem multifunctionality in global change research. Global Change Biology, 25(3), 763-774. https://doi.org/10.1111/gcb.14528

Sbragaglia, V., Nunez, J. D., Dominoni, D., Coco, S., Fanelli, E., Azzurro, E.,... Aguzzi, J. (2019). Annual rhythms of temporal niche partitioning in the Sparidae family are correlated to different environmental variables. Scientific Reports, 9, [1708 (2019)]. https://doi.org/10.1038/s41598-018-37954-0

Teurlincx, S., van Wijk, D., Mooij, W. M., Kuiper, J. J., Huttunen, I., Brederveld, R. J.,... Janssen, A. B. G. (2019). A perspective on water quality in connected systems: modelling feedbacks between up- and downstream transport and local ecologic. Current Opinion in Environmental Sustainability, 40, 21-29. https://doi.org/10.1016/j.cosust.2019.07.004

Veen, G. F., Wubs, E. R. J., Bardgett, R. D., Barrios, E., Bradford, M. A., Carvalho, S.,... Vet, L. E. M. (2019). Applying the Aboveground-Belowground Interaction Concept in Agriculture: Spatio-Temporal Scales Matter. Frontiers in Ecology and Evolution, 7. https://doi.org/10.3389/fevo.2019.00300

Tomotani, B. M., & Muijres, F. T. (2019). A songbird compensates for wing molt during escape flights by reducing the molt gap and increasing angle of attack. Journal of Experimental Biology, 222(10), jeb195396. https://doi.org/10.1242/jeb.195396

Silva Costa, F., Figueiredo Sena Macedo, M. W., Araujo, A., Rodrigues, C., Kuramae, E. E., Alcanfor, S.,... Barreto, C. C. (2019). Assessing nickel tolerance of bacteria isolated from serpentine soils. Brazilian Journal of Microbiology, 50(3), 705-713. https://doi.org/10.1007/s42770-019-00111-4

Cao, Y., Visser, M. E., & Tufto, J. (2019). A time-series model for estimating temporal variation in phenotypic selection on laying dates in a Dutch great tit population. Methods in Ecology and Evolution, 10(9), 1401-1411. https://doi.org/10.1111/2041-210X.13249

Camacho, A., Sarma, S. S. S., Ricci, C., & Gulati, R. D. (2019). A tribute to Maria Rosa Miracle. Limnetica, 38(1), I-IX.

Haest, B., Hüppop, O., Van de Pol, M., & Bairlein, F. (2019). Autumn bird migration phenology: A potpourri of wind, precipitation, and temperature effects. Global Change Biology, 25(12), 4064-4080. https://doi.org/10.1111/gcb.14746

Vijverberg, J., van der Land, M. A., Vreeke, A., Amarasinghe, B. P. B., & Kortmulder, K. (2019). Availability of animal food organisms and their utilization by cyprinids in Srilankan hillstream pools. Sri Lanka Journal of Aquatic Sciences, 24(2), 53-63. https://doi.org/10.4038/sljas.v24i2.7567

Yao, Z., Du, S., Liang, C., Zhao, Y., Dini-Andreote, F., Wang, K., & Zhang, D. (2019). Bacterial Community Assembly in a Typical Estuarine Marsh with Multiple Environmental Gradients. Applied and Environmental Microbiology, 85(6), [e02602]. https://doi.org/10.1128/AEM.02602-18

Cipriano, M., Suleiman, A. K. A., da Silveira, A. P. D., Carmo, J. B., & Kuramae, E. E. (2019). Bacterial community composition and diversity of two different forms of an organic residue of bioenergy crop. PeerJ, 7, [e6768]. https://doi.org/10.7717/peerj.6768

Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F., & van der Putten, W. H. (2019). Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel Environments. Frontiers in Microbiology, 10, [505]. https://doi.org/10.3389/fmicb.2019.00505

Hsu, B-Y., Verhagen, I. C., Gienapp, P., Darras, V. M., Visser, M. E., & Ruuskanen, S. (2019). Between- and within-individual variation of maternal thyroid hormone deposition in wild great tits (Parus major). American Naturalist, 194(4), E96-E108. https://doi.org/10.1086/704738

Janssens, T. K. S., Tyc, O., Besselink, H., De Boer, W., & Garbeva, P. V. (2019). Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine. FEMS Microbiology Letters, [fnz023]. https://doi.org/10.1093/femsle/fnz023

Petruzzella, A. (2019). Biotic resistance to alien plant invasions in tropical and temperate freshwater ecosystems (PhD Thesis).

Tomotani, B. M., Bil, W., van der Jeugd, H. P., Pieters, R. P. M., & Muijres, F. T. (2019). Carrying a logger reduces escape flight speed in a passerine bird, but relative logger mass may be a misleading measure of this flight performance detriment. Methods in Ecology and Evolution, 10(1), 70-79. https://doi.org/10.1111/2041-210X.13112

Koerner, S. E., Smith, M. D., Burkepile, D. E., Hanan, N. P., Avolio, M. L., Collins, S. L.,... Zelikova, T. J. (2019). Change in dominance determines herbivore effects on plant biodiversity. Nature Ecology and Evolution, 2, 1925-1932. https://doi.org/10.1038/s41559-018-0696-y

Li, Y., Bezemer, T. M., Yang, J., Lü, X., Li, X., Liang, W.,... Li, Q. (2019). Changes in litter quality induced by N deposition alter soil microbial communities. Soil Biology & Biochemistry, 130, 33-42. https://doi.org/10.1016/j.soilbio.2018.11.025

Verhofstad, M. J. J. M., & Bakker, E. S. (2019). Classifying nuisance submerged vegetation depending on ecosystem services. Limnology, 20(1), 55-68. https://doi.org/10.1007/s10201-017-0525-z

Lameris, T., de Jong, M. E., Boom, M. P., van der Jeugd, H. P., Litvin, K. E., Loonen, M. J. J. E.,... Prop, J. (2019). Climate warming may affect the optimal timing of reproduction for migratory geese differently in the low and high Arctic. Oecologia, in press. https://doi.org/10.1007/s00442-019-04533-7

Allen, A. M., Ens, B. J., van de Pol, M., van der Jeugd, H., Frauendorf, M., van der Kolk, H-J.,... Jongejans, E. (2019). Colour-ring wear and loss effects in citizen science mark-resighting studies. Avian Research, 10(1), 11. https://doi.org/10.1186/s40657-019-0151-z

Mesquita, M. C. B., Lurling, M., Dorr, F., Pinto, E., & Marinho, M. M. (2019). Combined Effect of Light and Temperature on the Production of Saxitoxins in Cylindrospermopsis raciborskii Strains. Toxins, 11(1), [38]. https://doi.org/10.3390/toxins11010038

He, L., Bakker, E. S., Alirangues Nunez, M. M., & Hilt, S. (2019). Combined effects of shading and clipping on the invasive alien macrophyte Elodea nuttallii. Aquatic Botany, 154, 24-27. https://doi.org/10.1016/j.aquabot.2018.11.014

Bulla, M., Reneerkens, J., Weiser, E. L., Sokolov, A., Taylor, A. R., Sittler, B.,... Kempenaers, B. (2019). Comment on "Global pattern of nest predation is disrupted by climate change in shorebirds". Science, 364(6445). https://doi.org/10.1126/science.aaw8529

Weliange, W. S., Amarasinghe, U. S., Vijverberg, J., Leichtfried, M., & Füreder, L. (2019). Comparison of trophic structure of fish assemblages in two tropical steams in Sri Lanka: a seasonal dry zone stream and a perennial wet zone stream. International Review of Hydrobiology, 104(3-4), 80-93. https://doi.org/10.1002/iroh.201601867

Kurm, V., van der Putten, W. H., Weidner, S., Geisen, S., Snoek, B. L., Bakx, T., & Hol, W. H. G. (2019). Competition and predation as possible causes of bacterial rarity. Environmental Microbiology, 21(4), 1356-1368. https://doi.org/10.1111/1462-2920.14569

Teurlincx, S. (2019). Connecting the ditches: a spatial perspective on biodiversity in Dutch polder landscapes (PhD Thesis).

Contreras-Dávila, C. A., Carrión, V. J., Vonk, V. R., Buisman, C. N. J., & Strik, D. P. B. T. B. (2019). Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation. Water Research. https://doi.org/10.1016/j.watres.2019.115215

Cain, K. E., Hall, M. L., Medina, I., Leitao, A. V., Delhey, K., Brouwer, L.,... Mulder, R. A. (2019). Conspicuous Plumage Does Not Increase Predation Risk: A Continent-Wide Test Using Model Songbirds. American Naturalist, in press, 0. https://doi.org/10.1086/701632

Nolet, B. A., Schreven, K. H. T., Boom, M. P., & Lameris, T. (2019). Contrasting effects of the onset of spring on reproductive success of Arctic-nesting geese. Auk, [ukz063]. https://doi.org/10.1093/auk/ukz063

Harkes, P., Suleiman, A. K. A., van den Elsen, S., De Haan, J., Holterman, M., Kuramae, E., & Helder, J. (2019). Conventional & organic soil management as divergent drivers of resident and active fractions of major soil food web constituents. Scientific Reports, 9, [13521 (2019)]. https://doi.org/10.1038/s41598-019-49854-y

Kurm, V., van der Putten, W. H., & Hol, W. H. G. (2019). Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium. PLoS One, 14(1), [e0210073]. https://doi.org/10.1371/journal.pone.0210073

Cheng, K., Frenken, T., Brussaard, C. P. D., & Van de Waal, D. B. (2019). Cyanophage Propagation in the Freshwater Cyanobacterium Phormidium Is Constrained by Phosphorus Limitation and Enhanced by Elevated pCO2. Frontiers in Microbiology, in press. https://doi.org/10.3389/fmicb.2019.00617

Perez Jaramillo, J. E., De Hollander, M., Ramirez, C. A., Mendes, R., Raaijmakers, J. M., & Carrión, V. J. (2019). Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. Microbiome, 7, [114]. https://doi.org/10.1186/s40168-019-0727-1

Chen, C., Gols, R., Biere, A., & Harvey, J. A. (2019). Differential effects of climate warming on reproduction and functional responses on insects in the fourth trophic level. Functional Ecology, 33(4), 693-702. https://doi.org/10.1111/1365-2435.13277

Linssen, H., Van de Pol, M., Allen, A., Jans, M., Ens, B. J., Krijgsveld, K.,... van der Kolk, H. (2019). Disturbance increases high tide travel distance of a roosting shorebird but only marginally affects daily energy expenditure. Avian Research, 10(31). https://doi.org/10.1186/s40657-019-0171-8

de Boer, J., Busula, A. O., ten Berge, J., & van Dijk, T. S. (2019). Does artemether–lumefantrine administration affect mosquito olfactory behaviour and fitness? Malaria Journal, 18(28). https://doi.org/10.1186/s12936-019-2646-9

Resch, M. C., Schütz, M., Graf, U., Wagenaar, R., van der Putten, W. H., & Risch, A. C. (2019). Does topsoil removal in grassland restoration benefit both soil nematode and plant communities? Journal of Applied Ecology, 56(7), 1782-1793. https://doi.org/10.1111/1365-2664.13400

De Long, J. R., Semchenko, M., Pritchard, W. J., Cordero, I., Fry, E. L., Jackson, B. G.,... Bardgett, R. D. (2019). Drought soil legacy overrides maternal effects on plant growth. Functional Ecology, 33(8), 1400-1410. https://doi.org/10.1111/1365-2435.13341

Kleijn, D., Bommarco, R., Fijen, T. P. M., Garibaldi, L. A., Potts, S. G., & van der Putten, W. H. (2019). Ecological Intensification: Bridging the Gap between Science and Practice. Trends in Ecology & Evolution, 34(2), 154-166. https://doi.org/10.1016/j.tree.2018.11.002

Cordovez, V., Dini-Andreote, F., Carrión, V. J., & Raaijmakers, J. M. (2019). Ecology and Evolution of Plant Microbiomes. Annual Review of Microbiology, Online. https://doi.org/10.1146/annurev-micro-090817-062524

Manfrin, A., Teurlincx, S., Lorenz, A. W., Haase, P., Marttila, M., Syrjänen, J.,... Stoll, S. (2019). Effect of river restoration on life-history strategies in fish communities. Science of the Total Environment, in press.

Di Lonardo, P., De Boer, W., Zweers, A. J., & Van der Wal, A. (2019). Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter. PLoS One, 15(5), [0216730]. https://doi.org/10.1371/journal.pone.0216730

Zhang, P., Grutters, B. M. C., van Leeuwen, C. H. A., Xu, J., Petruzzella, A., van den Berg, R. F., & Bakker, E. S. (2019). Effects of Rising Temperature on the Growth, Stoichiometry, and Palatability of Aquatic Plants. Frontiers in Plant Science, 9, [1947]. https://doi.org/10.3389/fpls.2018.01947

de Boer, J. G., Salis, L., Tollenaar, W., van Heumen, L. J. M., Costaz, T. P. M., Harvey, J. A.,... Vet, L. E. M. (2019). Effects of temperature and food source on reproduction and longevity of aphid hyperparasitoids of the genera Dendrocerus and Asaphes. BioControl, 64(3), 277-290. https://doi.org/10.1007/s10526-019-09934-4

Sui, Y., Muys, M., Van de Waal, D. B., D'Adamo, S., Vermeir, P., Fernandes, T. V., & Vlaeminck, S. E. (2019). Enhancement of co-production of nutritional protein and carotenoids in Dunaliella salina using a two-phase cultivation assisted by nitrogen level and light intensity. Bioresource Technology, 287(September 2019), [121398]. https://doi.org/10.1016/j.biortech.2019.121398

Sieger, C. S., Cobben, M. M. P., & Hovestadt, T. (2019). Environmental change and variability influence niche evolution of isolated natural populations. Regional Environmental Change, 19(7), 1999-2011. https://doi.org/10.1007/s10113-019-01534-3

Yan, Y., Klinkhamer, P. G. L., van Veen, J. A., & Kuramae, E. E. (2019). Environmental filtering: A case of bacterial community assembly in soil. Soil Biology & Biochemistry, 136, [107531]. https://doi.org/10.1016/j.soilbio.2019.107531

van der Waals, M., Plugge, C. M., Meima-Franke, M., de Waard, P., Bodelier, P. L. E., Smidt, H., & Gerritse, J. (2019). Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater. Water Research, 148(January), 314-323. https://doi.org/10.1016/j.watres.2018.10.050

Visser, M. E., & Gienapp, P. (2019). Evolutionary and demographic consequences of phenological mismatches: review article. Nature Ecology and Evolution. https://doi.org/10.1038/s41559-019-0880-8

da Silveira, A. P. D., Iório, R. D. P. F. I., Marcos, F. C. C., Fernandes, A. O., De Souza, S. A. C. D., Kuramae, E. E., & Cipriano, M. (2019). Exploitation of new endophytic bacteria and their ability to promote sugarcane growth and nitrogen nutrition. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 112(2), 283-295. https://doi.org/10.1007/s10482-018-1157-y

Laine, V. N., Verhagen, I., Mateman, A. C., Pijl, A., Williams, T. D., Gienapp, P.,... Visser, M. E. (2019). Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird. BMC Genomics, 20(1). https://doi.org/10.1186/s12864-019-6043-0

Class, B., Brommer, J. E., & van Oers, K. (2019). Exploratory behavior undergoes genotype–age interactions in a wild bird. Ecology and Evolution, 9(16), 8987-8994. https://doi.org/10.1002/ece3.5430

Laine, V. N., Gossmann, T. I., van Oers, K., Visser, M. E., & Groenen, M. A. M. (2019). Exploring the unmapped DNA and RNA reads in a songbird genome. BMC Genomics, 20(1), [19]. https://doi.org/10.1186/s12864-018-5378-2

Brouwer, L., & Griffith, S. C. (2019). Extra‐pair paternity in birds. Molecular Ecology, online, [in press]. https://doi.org/10.1111/mec.15

Verhagen, I., Laine, V. N., Mateman, A. C., Pijl, A., de Wit, R., van Lith, B.,... Visser, M. E. (2019). Fine-tuning of seasonal timing of breeding is regulated downstream in the underlying neuro-endocrine system in a small songbird. Journal of Experimental Biology, 222, [jeb.202481]. https://doi.org/10.1242/jeb.202481

Kölzsch, A., Müskens, G. J. D. M., Szinai, P., Moonen, S., Glazov, P., Kruckenberg, H.,... Nolet, B. A. (2019). Flyway connectivity and exchange primarily driven by moult migration in geese. Movement Ecology, 7, [3]. https://doi.org/10.1186/s40462-019-0148-6

Hannula, S. E., Zhu, F., Heinen, R., & Bezemer, T. M. (2019). Foliar-feeding insects acquire microbiomes from the soil rather than the host plant. Nature Communications, 10, [1254(2019)]. https://doi.org/10.1038/s41467-019-09284-w

Tian, P., Mason-Jones, K. E., Liu, S., Wang, Q., & Sun, T. (2019). Form of nitrogen deposition affects soil organic matter priming by glucose and cellulose: Biology and Fertility of Soils. Biology and Fertility of Soils, 55(4), 383-391. https://doi.org/10.1007/s00374-019-01357-8

Wagg, C., Schlaeppi, K., Banerjee, S., Kuramae, E., & Van der Heijden, M. G. A. (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10. https://doi.org/10.1038/s41467-019-12798-y

Verhagen, I. C., Gienapp, P., Laine, V., van Grevenhof, E., Mateman, A. C., van Oers, K., & Visser, M. E. (2019). Genetic and phenotypic responses to genomic selection for timing of breeding in a wild songbird. Functional Ecology, 33(9), 1708-1721. https://doi.org/10.1111/1365-2435.13360

Wang, Y. A., Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E., & Harvey, S. C. (2019). Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of -synuclein toxicity. BMC Genomics, 20. https://doi.org/10.1186/s12864-019-5597-1

Gienapp, P., Calus, M. P. L., Laine, V. N., & Visser, M. E. (2019). Genomic selection on breeding time in a wild bird population. Evolution Letters, 3(2), 142-151. https://doi.org/10.1002/evl3.103

Bailey, L. D., Ens, B. J., Both, C., Heg, D., Oosterbeek, K., & Van de Pol, M. (2019). Habitat selection can reduce effects of extreme climatic events in a long‐lived shorebird. Journal of Animal Ecology, 88(10), 1474-1485. https://doi.org/10.1111/1365-2656.13041

Brandenburg, K. M. (2019). Harmful algal traits and bloom dynamics under climate change (PhD Thesis).

Masteling, R., Lombard, L., De Boer, W., Raaijmakers, J. M., & Dini-Andreote, F. (2019). Harnessing the microbiome to control plant parasitic weeds. Current Opinion in Microbiology, 49(June), 26-33. https://doi.org/10.1016/j.mib.2019.09.006

Zhou, L., & Declerck, S. A. J. (2019). Herbivore consumers face different challenges along opposite sides of the stoichiometric knife-edge. Ecology Letters, 22(12), 2018-2027. https://doi.org/10.1111/ele.13386

Valdés-Correcher, E., Sitters, J., Wassen, M. J., Brion, N., & Olde Venterink, H. (2019). Herbivore dung quality affects plant community diversity. Scientific Reports, 9, [5675(2019)]. https://doi.org/10.1038/s41598-019-42249-z

Van de Waal, D. B., Brandenburg, K. M., Keuskamp, J., Trimborn, S., Rokitta, S., Kranz, S. A., & Rost, B. (2019). Highest plasticity of carbon-concentrating mechanisms in earliest evolved phytoplankton. Limnology & Oceanography Letters, 4(2), 37-43. https://doi.org/10.1002/lol2.10102

Kong, X., Zhan, Q., Boehrer, B., & Rinke, K. (2019). High frequency data provide new insights into evaluating and modeling nitrogen retention in reservoirs. Water Research, 166, [115017]. https://doi.org/10.1016/j.watres.2019.115017

in 't Zandt, M. H., Kip, N., Frank, J., Jansen, S., van Veen, J. A., Jetten, M. S. M., & Welte, C. U. (2019). High-level abundance of Methanobacteriales and Syntrophobacterales may help to prevent corrosion of metal sheet piles. Applied and Environmental Microbiology, Online, [AEM.01369-19]. https://doi.org/10.1128/AEM.01369-19

van Neerbos, F. A. C., de Boer, J. G., Salis, L., Tollenaar, W., Kos, M., Vet, L. E. M., & Harvey, J. A. (2019). Honeydew composition and its effect on life-history parameters of hyperparasitoids. Ecological Entomology, Online. https://doi.org/10.1111/een.12799

Liao, H., Friman, V-P., Geisen, S., Zhao, Q., Cui, P., Lu, X.,... Zhou, S. (2019). Horizontal gene transfer and shifts in linked bacterial community composition are associated with maintenance of antibiotic resistance genes during food waste composting. Science of the Total Environment, 660, 841-850. https://doi.org/10.1016/j.scitotenv.2018.12.353

Janssen, A. BG., Janse, J. H., Beusen, A. HW., Chang, M., Harrison, J. A., Huttunen, I.,... Mooij, W. M. (2019). How to model algal blooms in any lake on earth. Current Opinion in Environmental Sustainability, 36, 1-10. https://doi.org/10.1016/j.cosust.2018.09.001

Cusumano, A., Harvey, J. A., Dicke, M., & Poelman, E. H. (2019). Hyperparasitoids exploit herbivore-induced plant volatiles during host location to assess host quality and non-host identity. Oecologia, 189(3), 699-709. https://doi.org/10.1007/s00442-019-04352-w

Cassman, N. (2019). Impact of nitrogen fertilization on the soil microbiome and nitrous oxide emissions (PhD Thesis).

Perez Jaramillo, J. E. (2019). Impact of plant domestication on spermosphere and rhizosphere microbiome composition (PhD Thesis).

Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A., & Wakelin, S. A. (2019). Impacts of long-term plant residue management on soil organic matter quality, Pseudomonas community structure and disease suppressiveness. Soil Biology & Biochemistry, online, 396-406. https://doi.org/10.1016/j.soilbio.2019.05.020

Lichtenauer, W., Van de Pol, M., Cockburn, A., & Brouwer, L. (2019). Indirect fitness benefits through extra-pair mating are large for an inbred minority, but cannot explain widespread infidelity among red-winged fairy wrens. Evolution, 73(3), 467-480. https://doi.org/10.1111/evo.13684

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Di Lonardo, P. (2019). The microbial side of soil priming effects (PhD Thesis).

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Ulgezen, Z. N., Käpylä, T., Meerlo, P., Spoelstra, K., Visser, M. E., & Dominoni, D. M. (2019). The preference and costs of sleeping under light at night in forest and urban great tits. Proceedings of the Royal Society B-Biological Sciences, 286(1905), [20190872]. https://doi.org/10.1098/rspb.2019.0872

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Atema, E., Mulder, E., van Noordwijk, A. J., & Verhulst, S. (2019). Ultralong telomeres shorten with age in nestling great tits but are static in adults and mask attrition of short telomeres. Molecular Ecology Resources, 19, 648-658. https://doi.org/10.1111/1755-0998.12996

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Li, X. G., Garbeva, P., Liu, X., Klein Gunnewiek, P. J. A., Clocchiatti, A., Hundscheid, M. P. J.,... De Boer, W. (Accepted/In press). Volatile-mediated antagonism of soil bacterial communities against fungi. Environmental Microbiology, Online. https://doi.org/10.1111/1462-2920.14808

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Zhang, P., van den Berg, R. F., van Leeuwen, C. H. A., Blonk, B. A., & Bakker, E. S. (2018). Aquatic omnivores shift their trophic position towards increased plant consumption as plant stoichiometry becomes more similar to their body stoichiometry. PLoS One, 13(9), [e0204116]. https://doi.org/10.1371/journal.pone.0204116

Lameris, T. K., van der Jeugd, H. P., Eichhorn, G., Dokter, A. M., Bouten, W., Boom, M. P.,... Nolet, B. A. (2018). Arctic geese tune migration to a warming climate but still suffer from a phenological mismatch. Current Biology, 28(15), 2467-2473. [e4]. https://doi.org/10.1016/j.cub.2018.05.077

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de Rijk, M., Cegarra Sanchez, V., Smid, H. M., Engel, B., Vet, L. E. M., & Poelman, E. H. (2018). Associative learning of host presence in non-host environments influences parasitoid foraging. Ecological Entomology, 43(3), 318-325. https://doi.org/10.1111/een.12504

de Bruijn, J. A. C., Vet, L. E. M., Jongsma, M. A., & Smid, H. M. (2018). Automated high-throughput individual tracking system for insect behavior: Applications on memory retention in parasitic wasps. Journal of Neuroscience Methods, 309, 208-217. https://doi.org/10.1016/j.jneumeth.2018.09.012

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Gao, B., Liu, J., Zhang, C., & Van de Waal, D. B. (2018). Biological stoichiometry of oleaginous microalgal lipid synthesis: The role of N:P supply ratios and growth rate on microalgal elemental and biochemical composition. Algal Research, 32, 353-361. https://doi.org/10.1016/j.algal.2018.04.019

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Kurm, V. (2018). Causes and consequences of soil bacterial rarity (PhD Thesis).

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Tomotani, B. M., van der Jeugd, H. P., Gienapp, P., De la Hera, I., Pilzecker, J., Teichmann, C., & Visser, M. E. (2018). Climate change leads to differential shifts in the timing of annual cycle stages in a migratory bird. Global Change Biology, 24(2), 823-835. https://doi.org/10.1111/gcb.14006

da Silva, V. H., Laine, V. N., Bosse, M., Oers, K. V., Dibbits, B. W., Visser, M. E.,... Groenen, M. A. M. (2018). CNVs are associated with genomic architecture in a songbird. BMC Genomics, 19(2), [195]. https://doi.org/10.1186/s12864-018-4577-1

Benevenuto, J., Texeira-Silva, N. S., Kuramae, E. E., Croll, D., & Vitorello, C. B. M. (2018). Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specialization. Frontiers in Microbiology, 9, [660]. https://doi.org/10.3389/fmicb.2018.00660

Siegel-Hertz, K., Edel-Hermann, V., Chapelle, E., Terrat, S., Raaijmakers, J. M., & Steinberg, C. (2018). Comparative microbiome analysis of a Fusarium wilt suppressive soil and a Fusarium wilt conducive soil from the Châteaurenard region. Frontiers in Microbiology, 9, 568. https://doi.org/10.3389/FMICB.2018.00568

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Bokhorst, S., Veen, G. F., Sundqvist, M. K., De Long, J. R., Kardol, P., & Wardle, D. A. (2018). Contrasting responses of springtails and mites to elevation and vegetation type in the sub-Arctic. Pedobiologia, 67, 57-64. https://doi.org/10.1016/j.pedobi.2018.02.004

Shi, J., Joshi, J., Tielbörger, K., Verhoeven, K. J. F., & Macel, M. (2018). Costs and benefits of admixture between foreign genotypes and local populations in the field. Ecology and Evolution, 8(7). https://doi.org/10.1002/ece3.3946

Treep, J., de Jager, M., Kuiper, L. S., Duman, T., Katul, G. G., & Soons, M. B. (2018). Costs and benefits of non-random seed release for long-distance dispersal in wind-dispersed plant species. Oikos, 127(9), 1330-1343. https://doi.org/10.1111/oik.04430

de Bruijn, J. A. C., Vet, L. E. M., & Smid, H. M. (2018). Costs of Persisting Unreliable Memory: Reduced Foraging Efficiency for Free-Flying Parasitic Wasps in a Wind Tunnel. Frontiers in Ecology and Evolution, 6, [160]. https://doi.org/10.3389/fevo.2018.00160

Junker, R. R., Kuppler, J., Amo, L., Blande, J. D., Borges, R. M., van Dam, N. M.,... Köllner, T. G. (2018). Covariation and phenotypic integration in chemical communication displays: biosynthetic constraints and eco-evolutionary implications. New Phytologist, 220(3), 739-749. https://doi.org/10.1111/nph.14505

Schlemper, T. R., van Veen, J. A., & Kuramae, E. E. (2018). Co-variation of bacterial and fungal communities in different sorghum cultivars and growth stages is soil dependent. Microbial Ecology, 76(1), 205-214. https://doi.org/10.1007/s00248-017-1108-6

Schrama, M., De Haan, J., Kroonen, M., Verstegen, H., & Van der Putten, W. H. (2018). Crop yield gap and stability in organic and conventional farming systems. Agriculture, Ecosystems and Environment, 256, 123-130. https://doi.org/10.1016/j.agee.2017.12.023

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Trung, B., Dao, T-S., Faassen, E., & Lurling, M. (2018). Cyanobacterial Blooms and Microcystins in Southern Vietnam. Toxins, 10(11), [471]. https://doi.org/10.3390/toxins10110471

Huerta Lwanga, E., Thapa, B., Yang, X., Gertsen, H., Salánki, T., Geissen, V., & Garbeva, P. V. (2018). Decay of low-density polyethylene by bacteria extracted from earthworm’s guts: a potential for soil restoration. Science of the Total Environment, 624, 753-757. https://doi.org/10.1016/j.scitotenv.2017.12.144

Schmidt, R. L., Durling, M., de Jager, V. C. L., Menezes, R. C., Nordkvist, E., Svatos, A.,... Garbeva, P. V. (2018). Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum. FEMS Microbiology Ecology, 94(6), [fiy078]. https://doi.org/10.1093/femsec/fiy078

Xue, W., Bezemer, T. M., & Berendse, F. (2018). Density-dependency and plant-soil feedback: former plant abundance influences competitive interactions between two grassland plant species through plant-soil feedbacks. Plant and Soil, 428(1-2), 441-452. https://doi.org/10.1007/s11104-018-3690-x

Ramirez, K. S., Knight, C. G., de Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, A.,... De Vries, F. T. (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3, 189-196. https://doi.org/10.1038/s41564-017-0062-x

Zhou, L., Lemmen, K. D., Zhang, W., & Declerck, S. A. J. (2018). Direct and indirect effects of resource P-limitation differentially impact population growth, life history and body elemental composition of a zooplankton consumer. Frontiers in Microbiology, 9, [00172]. https://doi.org/10.3389/fmicb.2018.00172

Dassen, S. (2018). Diversity relations of plants and soil microbes (PhD Thesis).

Lourenço, K. S., Dimitrov, M., Pijl, A. S., Soares, J. R., do Carmo, J. B., van Veen, J. A.,... Kuramae, E. E. (2018). Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission. GCB Bioenergy, 10(9), 645-660. https://doi.org/10.1111/gcbb.12519

Dominoni, D. M., Jong, M., Bellingham, M., O'Shaughnessy, P., Oers, K., Robinson, J.,... Helm, B. (2018). Dose-response effects of light at night on the reproductive physiology of great tits (Parus major): Integrating morphological analyses with candidate gene expression. Journal of Experimental Zoology Part A: Ecological and Integrative Physiology, 329(8-9), 473-487. https://doi.org/10.1002/jez.2214

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Vandegehuchte, M. L., van der Putten, W. H., Duyts, H., Schütz, M., & Risch, A. C. (2017). Aboveground mammal and invertebrate exclusions cause consistent changes in soil food webs of two subalpine grassland types, but mechanisms are system-specific. Oikos, 126(2), 212-223. https://doi.org/10.1111/oik.03341

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Pangesti, N., Vandenbrande, S., Pineda, A., Dicke, M., Raaijmakers, J. M., & Van Loon, J. J. A. (2017). Antagonism between two root-associated beneficial Pseudomonas strains does not affect plant growth promotion and induced resistance against a leaf-chewing herbivore. FEMS Microbiology Ecology, 93(4), [fix038]. https://doi.org/10.1093/femsec/fix038

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Pinzari, F., Maggi, O., Lunghini, D., Di Lonardo, P., & Persiani, A. M. (2017). A simple method for measuring fungal metabolic quotient and comparing carbon use efficiency of different isolates: Application to Mediterranean leaf litter fungi. Plant Biosystems, 151(2), 371-376. https://doi.org/10.1080/11263504.2017.1284166

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Bailey, L. (2017). Between the devil and the deep blue sea: Consequences of extreme climatic events in the Eurasian oystercatcher (Haematopus ostralegus) (PhD Thesis).

Grutters, B. M. C. (2017). Beyond barriers: ecosystem functions of alien aquatic plants (PhD Thesis). Utrecht University.

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Zadereev, E. S., Gulati, R. D., & Camacho, A. (2017). Biological and Ecological Features, Trophic Structure and Energy Flow in Meromictic Lakes. In R. D. Gulati, E. S. Zadereev, & A. G. Degermendzhi [Eds.], Ecology of Meromictic Lakes (pp. 61-86). (Ecological Studies; Vol. 228). Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-49143-1_4

Frenken, T., Wierenga, J., Gsell, A. S., van Donk, E., Rohrlack, T., & Van de Waal, D. B. (2017). Changes in N:P Supply Ratios affect the Ecological Stoichiometry of a Toxic Cyanobacterium and its Fungal Parasite. Frontiers in Microbiology, 8, [1015]. https://doi.org/10.3389/fmicb.2017.01015

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Gagic, V., Kleijn, D., Báldi, A., Boros, G., Jørgensen, H. B., Elek, Z.,... Bommarco, R. (2017). Combined effects of agrochemicals and ecosystem services on crop yield across Europe. Ecology Letters, 20(11), 1427-1436. https://doi.org/10.1111/ele.12850

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Brandenburg, K. M., de Senerpont Domis, L. N., Wohlrab, S., Krock, B., John, U., van Scheppingen, Y.,... Van de Waal, D. B. (2017). Combined physical, chemical and biological factors shape Alexandrium ostenfeldii blooms in the Netherlands. Harmful Algae, 63, 146-153. https://doi.org/10.1016/j.hal.2017.02.004

Baveco, J. M., Bergjord, A. K., Bjerke, J. W., Chudzińska, M. E., Pellissier, L., Simonsen, C. E.,... Nolet, B. A. (2017). Combining modelling tools to evaluate a goose management scheme. Ambio, 46(Supplement 2), 210-223. https://doi.org/10.1007/s13280-017-0899-5

Snijders, L., & Naguib, M. (2017). Communication in Animal Social Networks: A Missing Link? Chapter eight. In M. Naguib, J. Podos, L. W. Simmons, L. Barrett, S. D. Healy, & M. Zuk [Eds.], Advances in the Study of Behavior (Vol. 49, pp. 297-359). Academic Press. https://doi.org/10.1016/bs.asb.2017.02.004

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Snijders, L., Weme, L. E. N., de Goede, P., Savage, J. L., van Oers, K., & Naguib, M. (2017). Context-dependent effects of radio transmitter attachment on a small passerine. Journal of Avian Biology, 48(5), 650-659. https://doi.org/10.1111/jav.01148

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Ho, A., El-Hawwary, A. H. M., Kim, S. Y., Meima-Franke, M., & Bodelier, P. (2015). Manure-associated stimulation of soil-borne methanogenic activity in agricultural soils. Biology and Fertility of Soils, 51(4), 511-516. https://doi.org/10.1007/s00374-015-0995-2

Kim, P. J., Bodelier, P. L. E., & Lu, Y. (2015). Mechanisms controlling greenhouse gas emissions from soils. Geoderma, 259-260(December), 321-322. https://doi.org/10.1016/j.geoderma.2015.07.009

Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M., & Urich, T. (2015). Metatranscriptomic census of active protists in soils. ISME Journal, 9(10), 2178-2190. https://doi.org/10.1038/ismej.2015.30

Ganendra, G., Mercado-Garcia, D., Hernandez-Sanabria, E., Boeckx, P., Ho, A., & Boon, N. (2015). Methane biofiltration using Autoclaved Aerated Concrete as the carrier material. Applied Microbiology and Biotechnology, 99(17), 7307-7320. https://doi.org/10.1007/s00253-015-6646-6

Schulz, K., Hunger, S., Brown, G. G., Tsai, S. M., Cerri, C. C., Conrad, R., & Drake, H. (2015). Methanogenic Food Web in Gut Contents of the Methane-Emitting Earthworm Eudrilus eugeniae from Brazil. ISME Journal, 9, 1778-1792. https://doi.org/10.1038/ismej.2014.262

Ballhausen, M-B., van Veen, J. A., Hundscheid, M. P. J., & De Boer, W. (2015). Methods for baiting and enriching fungus-feeding (mycophagous) rhizosphere bacteria. Frontiers in Microbiology, 6, [01416]. https://doi.org/10.3389/fmicb.2015.01416

Lupatini, M. (2015). Microbial communities in Pampa soils; impact of land-use chenges; soil type and climate conditions (PhD Thesis).

Maclean, I. M. D., Hopkins, J. J., Bennie, J., Lawson, C. R., & Wilson, R. J. (2015). Microclimates buffer the responses of plant communities to climate change. Global Ecology & Biogeography, 24(11), 1340-1350. https://doi.org/10.1111/geb.12359

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K.,... Glockner, F. O. (2015). Minimum Information about a Biosynthetic Gene cluster: commentary. Nature Chemical Biology, 11(9), 625-631. https://doi.org/10.1038/nchembio.1890

Van Dijk, J. G. B., Fouchier, R. A. M., Klaassen, M. R. J., & Matson, K. D. (2015). Minor differences in body condition and immune status between avian influenza virus infected and non-infected mallards: a sign of co-evolution? Ecology and Evolution, 5(2), 436-449. https://doi.org/10.1002/ece3.1359

Song, C., Mazzola, M., Cheng, X., Oetjen, J., Alexandrov, T., Dorrestein, P. C.,... Raaijmakers, J. (2015). Molecular and chemical dialogues in bacteria-protozoa interactions. Scientific Reports, 5, [12837]. https://doi.org/10.1038/srep12837

Malčická, M., Agosta, S. J., & Harvey, J. A. (2015). Multi level ecological fitting: indirect life cycles are not a barrier to host switching and invasion. Global Change Biology, 21(9), 3210-3218. https://doi.org/10.1111/gcb.12928

Malčická, M., Bezemer, T. M., Visser, B., Bloemberg, M., Snart, C. J. P., Hardy, I. C. W., & Harvey, J. A. (2015). Multi-trait mimicry of ants by a parasitoid wasp. Scientific Reports, 5, [8043]. https://doi.org/10.1038/srep08043

Rudnick, M. B. (2015). Mycophagous soil bacteria (PhD Thesis). Wageningen University.

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