Publications

Theses

Understanding disease suppressive soils: molecular and chemical identification of microorganisms and mechanisms involved in soil suppressiveness to Fusarium culmorum of wheat

Thesis

Tuesday, 1 June, 2021

Unraveling hidden biodiversity: An example of integrative taxonomy applied to the hybridizing Brachionus calyciflorus species complex

Thesis

Wednesday, 17 February, 2021

more theses

Recent scientific publications (2017 - )

For more information, please contact the NIOO library

Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A.,... van der Hooft, J. J. J. (2021). A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 17(4), 363-368. https://doi.org/10.1038/s41589-020-00724-z

Berendse, F., Geerts, R. H. E. M., Elberse, W. T., Bezemer, T. M., Goedhart, P. W., Xue, W., Noordijk, E., ter Braak, C. J. F., & Korevaar, H. (2021). A matter of time: recovery of plant species diversity in wild plant communities at declining nitrogen deposition. Diversity and Distributions, in press. https://doi.org/10.1111/ddi.13266

Barré, K., Kerbiriou, C., Ing, R. K., Bas, Y., Azam, C., Le Viol, I., & Spoelstra, K. (2021). Bats seek refuge in cluttered environment when exposed to white and red lights at night. Movement Ecology, 9(1), [3]. https://doi.org/10.1186/s40462-020-00238-2

Clocchiatti, A. (2021). Bringing soil fungi into action: Options for forward-looking agriculture (PhD Thesis). Wageningen University. https://doi.org/10.18174/537032

Taparia, T., Hendrix, E., Hendriks, M., Nijhuis, E., de Boer, W., & van der Wolf, J. (2021). Casing soil microbiome mediates suppression of bacterial blotch of mushrooms during consecutive cultivation cycles. Soil Biology and Biochemistry, 155, [108161]. https://doi.org/10.1016/j.soilbio.2021.108161

Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J-M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C.,... Drezen, J-M. (2021). Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology, 4(1), 104. https://doi.org/10.1038/s42003-020-01623-8

de Bruijn, D. S., ter Braak, P. M., Van de Waal, D. B., Olthuis, W., & van den Berg, A. (2021). Coccolithophore calcification studied by single-cell impedance cytometry: Towards single-cell PIC:POC measurements. Biosensors and Bioelectronics, 173, [112808]. https://doi.org/10.1016/j.bios.2020.112808

Verstijnen, Y. J. M., Maliaka, V., Catsadorakis, G., Lürling, M., & Smolders, A. J. P. (2021). Colonial nesting waterbirds as vectors of nutrients to Lake Lesser Prespa (Greece). Inland Waters, In press. https://doi.org/10.1080/20442041.2020.1869491

Costa, O. Y. A., Meima-Franke, M., & Bodelier, P. (2021). Complete and Draft Genome Sequences of Aerobic Methanotrophs Isolated from a Riparian Wetland. Microbiology Resource Announcements, 10(9), [e01438-20]. https://doi.org/10.1128/MRA.01438-20

Habtemariam, H., Kifle, D., Leta, S., Beekman, W., & Lürling, M. (2021). Cyanotoxins in drinking water supply reservoir (Legedadi, Central Ethiopia): implications for public health safety. SN Applied Sciences, 3(3), [328]. https://doi.org/10.1007/s42452-021-04313-0

Zardi, G. I., Nicastro, K. R., McQuaid, C. D., de Jager, M., Van de Koppel, J., & Seuront, L. (2021). Density-dependent and species-specific effects on self-organization modulate the resistance of mussel bed ecosystems to hydrodyn. American Naturalist, 197(5), 615-623. https://doi.org/10.1086/713738

Song, C., Jin, K., & Raaijmakers, J. M. (2021). Designing a home for beneficial plant microbiomes. Current Opinion in Plant Biology, 62, [102025]. https://doi.org/10.1016/j.pbi.2021.102025

Friman, J., Pineda, A., Gershenzon, J., Dicke, M., & van Loon, J. J. A. (2021). Differential effects of the rhizobacterium Pseudomonas simiae on above- and belowground chewing insect herbivores. Journal of Applied Entomology, 145(3), 250-260. https://doi.org/10.1111/jen.12842

Kirchner, N., Cano-Prieto, C., Schulz-Finke, A., Gütschow, M., Ortlieb, N., Moschny, J., Niedermeyer, T., Horak, J., Lämmerhofer, M., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2021). Discovery of Thanafactin A, a Linear Proline-containing Octa-Lipopeptide from Pseudomonas sp. SH-C52, Motivated by Genome Mining. Journal of Natural Products, 84(1), 101–109. https://doi.org/10.1021/acs.jnatprod.0c01174

Kornijów, R., Dukowska, M., Leszczyńska, J., Smith, C., Jeppesen, E., Hansson, L. A., Ketola, M., Irvine, K., Nõges, T., Sahuquillo, M., Miracle, M. R., Gross, E., Kairesalo, T., van Donk, E., de Eyto, E., García-Criado, F., Grzybkowska, M., & Moss, B. (2021). Distribution patterns of epiphytic reed-associated macroinvertebrate communities across European shallow lakes. Science of the Total Environment, 760, [144117]. https://doi.org/10.1016/j.scitotenv.2020.144117

Duan, Z., Tan, X., Paerl, H. W., & van de Waal, D. B. (2021). Ecological stoichiometry of functional traits in a colonial harmful cyanobacterium. Limnology and Oceanography, 66(5). https://doi.org/10.1002/lno.11744

Schelfhout, S., Wasof, S., Mertens, J., Vanhellemont, M., Demey, A., Haegeman, A., DeCock, E., Moeneclaey, I., Vangansbeke, P., Viaene, N., Baeyen, S., De Sutter, N., Maes, M., van der Putten, W. H., Verheyen, K., & De Schrijver, A. (2021). Effects of bioavailable phosphorus and soil biota on typical Nardus grassland species in competition with fast-growing plant species. Ecological Indicators, 120, [106880]. https://doi.org/10.1016/j.ecolind.2020.106880

Borer, E. T., Asik, L., Everett, R. A., Frenken, T., Gonzalez, A. L., Paseka, R. E., Peace, A., Seabloom, E. W., Strauss, A. T., van de Waal, D. B., & White, L. A. (2021). Elements of disease in a changing world: modelling feedbacks between infectious disease and ecosystems. Ecology Letters, 24(1). https://doi.org/10.1111/ele.13617

Sepers, B., Erven, J. A., Gawehns - Bruning, F. K. K., Laine, V., & van Oers, K. (2021). Epigenetics and Early Life Stress: Experimental Brood Size Affects DNA Methylation in Great Tits (Parus major). Frontiers in Ecology and Evolution, 9, [609061]. https://doi.org/10.3389/fevo.2021.609061

Resch, M. C., Schütz, M., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., & Risch, A. C. (2021). Evaluating long-term success in grassland restoration: an ecosystem multifunctionality approach. Ecological Applications, 31(3), [e02271]. https://doi.org/10.1002/eap.2271

Clocchiatti, A., Hannula, E., Van den Berg, M., Hundscheid, M. P. J., & de Boer, W. (2021). Evaluation of phenolic root exudates as stimulants of saprotrophic fungi in the rhizosphere. Frontiers in Microbiology, 12, [644046]. https://doi.org/10.3389/fmicb.2021.644046

Zhou, X., Leite, M. F. A., Zhang, Z., Tian, L., Chang, J., Ma, L., Li, X., van Veen, H., Tian, C., & Kuramae, E. (2021). Facilitation in the soil microbiome does not necessarily lead to niche expansion. Environmental Microbiome, 16, [4]. https://doi.org/10.1186/s40793-021-00373-2

Villar, N., Paz, C., Zipparro, V., Nazareth, S., Bulascoschi, L., Bakker, E. S., & Galetti, M. (2021). Frugivory underpins the nitrogen cycle. Functional Ecology, 35(2), 357-368. https://doi.org/10.1111/1365-2435.13707

Geisen, S., ten Hooven, F. C., Kostenko, O., Snoek, L. B., & van der Putten, W. H. (2021). Fungal root endophytes influence plants in a species-specific manner that depends on plant's growth stage. Journal of Ecology, 109(4), 1618-1632. https://doi.org/10.1111/1365-2745.13584

Reinhart, K. O., Bauer, J. T., McCarthy-Neumann, S., MacDougall, A. S., Hierro, J. L., Chiuffo, M. C., Mangan, S. A., Heinze, J., Bergmann, J., Joshi, J., Duncan, R. P., Diez, J. M., Kardol, P., Rutten, G., Fischer, M., van der Putten, W. H., Bezemer, T. M., & Klironomos, J. (2021). Globally, plant-soil feedbacks are weak predictors of plant abundance. Ecology and Evolution, 11(4), 1756-1768. https://doi.org/10.1002/ece3.7167

Lürling, M. (2021). Grazing resistance in phytoplankton. Hydrobiologia, 848(1), 237-249. https://doi.org/10.1007/s10750-020-04370-3

Cockburn, A., & van de Pol, M. (2021). hiphop: improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecular Ecology Resources. https://doi.org/10.1111/1755‐0998.13389

De Long, J., Heinen, R., Jongen, R., Hannula, E., Huberty, M. D., Kielak, A. M., Steinauer, K., & Bezemer, T. M. (2021). How plant-soil feedbacks influence the next generation of plants. Ecological Research, 36(1), 32-44. https://doi.org/10.1111/1440-1703.12165

Jeon, J-S., Carreno-Quintero, N., van Eekelen, H. D. L. M., De Vos, R. C. H., Raaijmakers, J. M., & Etalo, D. W. (2021). Impact of root-associated strains of three Paraburkholderia species on primary and secondary metabolism of Brassica oleracea. Scientific Reports, 11(1), 2781. https://doi.org/10.1038/s41598-021-82238-9

Hannula, E., Di Lonardo, P., Christensen, B. T., Crotty, F. V., Elsen, A., Erp, P. J. V., Hansen, E. M., Rubæk, G. H., Tits, M., Tóth, Z., & Termorshuizen, A. J. (2021). Inconsistent effects of agricultural practices on soil fungal communities across twelve European long-term experiments. European Journal of Soil Science, in press, [13090]. https://doi.org/10.1111/ejss.13090

Christensen, S., Hol, W. H. G., Kurm, V., & Vestergård, M. (2021). Increased likelihood of high nitrous oxide (N₂o) exchange in soils at reduced microbial diversity. Sustainability (Switzerland), 13(4), [1685]. https://doi.org/10.3390/su13041685

Tomotani, B. M., Gienapp, P., de la Hera, I., Terpstra, M., Pulido, F., & Visser, M. E. (2021). Integrating Causal and Evolutionary Analysis of Life-History Evolution: Arrival Date in a Long-Distant Migrant. Frontiers in Ecology and Evolution, 9, [630823]. https://doi.org/10.3389/fevo.2021.630823

Qu, L., Wang, M., & Biere, A. (2021). Interactive effects of Mycorrhizae, Soil Phosphorus and Light on Growth and Induction and Priming of Defense in Plantago lanceolata. Frontiers in Plant Science, 12, [647372]. https://doi.org/10.3389/fpls.2021.647372

Maliaka, V., Lürling, M., Fritz, C., Verstijnen, Y. J. M., Faassen, E. J., van Oosterhout, F., & Smolders, A. J. P. (2021). Interannual and Spatial Variability of Cyanotoxins in the Prespa Lake Area, Greece. Water, 13(3). https://doi.org/10.3390/w13030357

Brandenburg, K. M., Krock, B., Klip, H. C. L., Sluijs, A., Garbeva, P., & Van de Waal, D. B. (2021). Intraspecific variation in multiple trait responses of Alexandrium ostenfeldii towards elevated pCO₂. Harmful Algae, 101, [101970]. https://doi.org/10.1016/j.hal.2020.101970

Zhang, W., & Declerck, S. A. J. (Accepted/In press). Intrinsic postzygotic barriers constrain cross-fertilization between two hybridizing sibling rotifer species of the Brachionus calyciflorus species complex. Freshwater Biology, in press.

Thakur, M. P., Künne, T., Unsicker, S. B., Biere, A., Ferlian, O., Pruschitzki, U., Thouvenot, L., Türke, M., & Eisenhauer, N. (2021). Invasive earthworms reduce chemical defense and increase herbivory and pathogen infection in native trees. Journal of Ecology, 109(2), 763-775. https://doi.org/10.1111/1365-2745.13504

Salvador, R. B., Tomotani, B. M., O’Donnell, K. L., Cavallari, D. C., Tomotani, J. V., Salmon, R. A., & Kasper, J. (2021). Invertebrates in Science Communication: Confronting Scientists’ Practices and the Public’s Expectations. Frontiers in Environmental Science, 9, [606416]. https://doi.org/10.3389/fenvs.2021.606416

Chang, M. (2021). Know your limits: Modelling consumer-resource interactions to derive nutrient thresholds for a sustainable Anthropocene (PhD Thesis). Wageningen University. https://doi.org/10.18174/536795

Martínez-García, L. B., Korthals, G. W., Brussaard, L., Mainardi, G., & De Deyn, G. B. (2021). Litter quality drives nitrogen release, and agricultural management (organic vs. conventional) drives carbon loss during litter decomposition in agro-ecosystems. Soil Biology and Biochemistry, 153, [108115]. https://doi.org/10.1016/j.soilbio.2020.108115

Bahram, M., Netherway, T., Frioux, C., Ferretti, P., Coelho, L. P., Geisen, S., Bork, P., & Hildebrand, F. (2021). Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Environmental Microbiology, 23(1), 316-326. https://doi.org/10.1111/1462-2920.15314

Wang, Z., Xu, Z., Chen, Z., Kowalchuk, G. A., Fu, X., & Kuramae, E. (2021). Microbial inoculants modulate growth traits, nutrients acquisition and bioactive compounds accumulation of Cyclocarya paliurus. Forest Ecology and Management, 482. https://doi.org/10.1016/j.foreco.2020.118897

Weisskopf, L., Schulz, S., & Garbeva, P. (2021). Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-020-00508-1

Bossolani, J. W., Crusciol, C. A. C., Leite, M. F. A., Merloti, L. F., Moretti, L. G., Pascoaloto, I. M., & Kuramae, E. (2021). Modulation of the soil microbiome by long-term Ca-based soil amendments boosts soil organic carbon and physicochemical quality in a tropical no-till crop rotation system. Soil Biology & Biochemistry, 156, [108188]. https://doi.org/10.1016/j.soilbio.2021.108188

Cooke, A. C., Davidson, G. L., van Oers, K., & Quinn, J. L. (2021). Motivation, accuracy and feedback through experience explain innovative problem solving and its repeatability. Animal Behaviour, 174, 249-261. https://doi.org/0.1016/j.anbehav.2021.01.024

Cooke, A. C., Davidson, G. L., van Oers, K., & Quinn, J. L. (2021). Motivation, accuracy and positive feedback through experience explain innovative problem solving and its repeatability. Animal Behaviour, 174, 249-261. https://doi.org/10.1016/j.anbehav.2021.01.024

de Bruijn, J., Vosteen, I., Vet, L. E. M., Smid, H. M., & de Boer, J. G. (Accepted/In press). Multi‐camera field monitoring reveals costs of learning for parasitoid foraging behaviour. Journal of Animal Ecology, in press. https://doi.org/10.1111/1365-2656.13479

Lameris, T., Dokter, A., van der Jeugd, H. P., Bouten, W., Koster, J., Sand, S. H. H., Westerduin, C., & Nolet, B. A. (2021). Nocturnal foraging lifts time constraints in winter for migratory geese but hardly speeds up fueling. Behavioral Ecology, in press, [araa152]. https://doi.org/10.1093/beheco/araa152

Vargas, P., Bosmans, L., Van Kerckhove, S., Van Calenberge, B., Raaijmakers, J. M., Lievens, B., & Rediers, H. (2021). Optimizing biocontrol activity of Paenibacillus xylanexedens for management of hairy root disease in tomato grown in hydroponic greenhouses. Agronomy Journal, 11(5), [817]. https://doi.org/10.3390/agronomy11050817

Palmeros Parada, M., van der Putten, W., van der Wielen, L. A. M., Osseweijer, P., van Loosdrecht, M., Pashaei Kamali, F., & Posada, J. A. (2021). OSiD: opening the conceptual design of biobased processes to a context-sensitive sustainability analysis. Biofuels, Bioproducts and Biorefining, In press. https://doi.org/10.1002/bbb.2216

Cipriano, M., Freitas-Iório, R. D. P., Dimitrov, M., Andrade, S. A. L., Kuramae, E., & da Silveira, A. P. D. (2021). Plant-Growth Endophytic Bacteria Improve Nutrient Use Efficiency and Modulate Foliar N-Metabolites in Sugarcane Seedling. Microorganisms, 9(3), [479]. https://doi.org/10.3390/microorganisms9030479

Wood, K., Stillman, R. A., Newth, J. L., Nuijten, R., Hilton, G. M., Nolet, B. A., & Rees, E. (2021). Predicting avian herbivore responses to changing food availability and competition. Ecological Modelling, 441, [109421]. https://doi.org/10.1016/j.ecolmodel.2020.109421

Stillman, R. A., Rivers, E. M., Gilkerson, W., Wood, K. A., Nolet, B. A., Clausen, P., Wilson, H. M., & Ward, D. H. (2021). Predicting impacts of food competition, climate and disturbance on a long-distance migratory herbivore. Ecosphere, 12(3), [e03405].

Guo, S., Xiong, W., Hang, X., Gao, Z., Jiao, Z., Liu, H., Mo, Y., Zhang, N., Kowalchuk, G. A., Li, R., Shen, Q., & Geisen, S. (2021). Protists as main indicators and determinants of plant performance. Microbiome, 9(1), [64]. https://doi.org/10.1186/s40168-021-01025-w

Lindner, M., Laine, V., Verhagen, I. C., Viitaniemi, H., Visser, M. E., van Oers, K., & Husby, A. (2021). Rapid changes in DNA methylation associated with the initiation of reproduction in a small songbird. Molecular Ecology, in press. https://doi.org/10.1111/mec.15803

Thakur, M. P., van der Putten, W. H., Apon, F., Angelini, E., Vreš, B., & Geisen, S. (2021). Resilience of rhizosphere microbial predators and their prey communities after an extreme heat event. Functional Ecology, 35(1), 216-225. https://doi.org/10.1111/1365-2435.13696

Kaminsky, R. A., Wakelin, S. A., Highton, M. P., Samad, M. S., & Morales, S. E. (2021). Resolving broad patterns of prokaryotic community structure in New Zealand pasture soils. New Zealand Journal of Agricultural Research, 64(2), 143-161. https://doi.org/10.1080/00288233.2019.1678491

Valdebenito, J. O., Halimubieke, N., Lendvai, Á. Z., Figuerola, J., Eichhorn, G., & Székely, T. (2021). Seasonal variation in sex-specific immunity in wild birds. Scientific Reports, 11, [1349]. https://doi.org/10.1038/s41598-020-80030-9

Treep, J., de Jager, M., Bartumeus, F., & Soons, M. (2021). Seed dispersal as a search strategy: dynamic and fragmented landscapes select for multi-scale movement strategies in plants. Movement Ecology, 9, [4]. https://doi.org/10.1186/s40462-020-00239-1

Chang, J., Shi, S., Tian, L., Leite, M. F. A., Chang, C., Ji, L., Ma, L., Tian, C., & Kuramae, E. (2021). Self-crossing leads to weak co-variation of the bacterial and fungal communities in the rice rhizosphere. Microorganisms, 9(1). https://doi.org/10.3390/microorganisms9010175

van Wijk, D., Teurlincx, S., Brederveld, R. J., de Klein, J. J. M., Janssen, A. B. G., Kramer, L., Van Gerven, L. P. A., Kroeze, C., & Mooij, W. M. (2021). Smart Nutrient Retention Networks: a novel approach for nutrient conservation through water quality management. Inland Waters, in press. https://doi.org/10.1080/20442041.2020.1870852

Meisner, A., Snoek, B., Nesme, J., Dent, E., Jacquiod, S., Classen, A. T., & Priemé, A. (2021). Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles. ISME Journal, 15, 1207-1221. https://doi.org/10.1038/s41396-020-00844-3

Grum-Grzhimaylo, A. A., Bastiaans, E., van den Heuvel, J., Berenguer Millanes, C., Debets, A. J. M., & Aanen, D. K. (2021). Somatic deficiency causes reproductive parasitism in a fungus. Nature Communications, 12, [783]. https://doi.org/10.1038/s41467-021-21050-5

Bossolani, J. W., dos Santos, F. L., Meneghette, H. H. A., Sanches, I. R., Moretti, L. G., Parra, L. F., & Lazarini, E. (2021). Soybean in Crop Rotation with Maize and Palisade Grass Intercropping Enhances the Long-term Effects of Surface Liming in No-till System. Journal of Soil Science and Plant Nutrition, 21(1), 119–130. https://doi.org/10.1007/s42729-020-00347-2

Lesilau, F., Verschueren, S., van't Zelfde, M., Musters, K. C. J. M., De Snoo, G. R., & De Iongh, H. H. (2021). Spatial ecology of lions in a small, semi-fenced park surrounded by dense human populations: The case study of Nairobi National Park, Kenya. Mammalia, in press. https://doi.org/10.1515/mammalia-2020-0116

Xiong, D., Wei, C., Wang, X., Lü, X., Fang, S., Li, Y., Wang, X., Liang, W., Han, X., Bezemer, T. M., & Li, Q. (2021). Spatial patterns and ecological drivers of soil nematode β-diversity in natural grasslands vary among vegetation types and trophic position. Journal of Animal Ecology, 90(5), 1367-1378. https://doi.org/10.1111/1365-2656.13461

Martín Vélez, V., van Leeuwen, C. H. A., Sanchez, M. I., Hortas, F., Shamoun-Baranes, J., Thaxter, C. B., Lens, L., Camphuysen, C. J., & Green, A. J. (2021). Spatial patterns of weed dispersal by wintering gulls within and beyond an agricultural landscape. Journal of Ecology, 109(4), 1947-1958. https://doi.org/10.1111/1365-2745.13619

Fischer, K., Kreyling, J., Beaulieu, M., Beil, I., Bog, M., Bonte, D., Holm, S., Knoblauch, S., Koch, D., Muffler, L., Mouginot, P., Paulinich, M., Scheepens, J. F., Schiemann, R., Schmeddes, J., Schnittler, M., Uhl, G., van der Maaten-Theunissen, M., Weier, J. M.,... Gienapp, P. (2021). Species-specific effects of thermal stress on the expression of genetic variation across a diverse group of plant and animal taxa under experimental conditions. Heredity, 126(1), 23–37. https://doi.org/10.1038/s41437-020-0338-4

McDiarmid, C. S., Li, R., Kahrl, A. F., Rowe, M., & Griffith, S. C. (2021). Sperm Sizer: a program to semi-automate the measurement of sperm length. Behavioral Ecology and Sociobiology, 75. https://doi.org/10.1007/s00265-021-03013-4

Veen, G. F., ten Hooven, F., Weser, C., & Hannula, E. (2021). Steering the soil microbiome by repeated litter addition. Journal of Ecology, in press. https://doi.org/10.1111/1365-2745.13662

Wang, Z., Chen, Z., Kowalchuk, G., Xu, Z., Fu, X., & Kuramae, E. (2021). Succession of the Resident Soil Microbial Community in Response to Periodic Inoculations. Applied and Environmental Microbiology, 87(9), [e00046-21]. https://doi.org/10.1128/AEM.00046-21

Cordovez, V., Rotoni, C., Dini-Andreote, F., Oyserman, B. O., Carrión, V. J., & Raaijmakers, J. M. (2021). Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome. Science of the Total Environment, 772, [144825]. https://doi.org/10.1016/j.scitotenv.2020.144825

Zhang, P., Kong, X., Bakker, E. S., Xu, J., & Zhang, M. (2021). Temperature affects carbon and nitrogen stable isotopic signatures of aquatic plants. Aquatic Sciences, 83(2), [39]. https://doi.org/10.1007/s00027-021-00794-8

Lindner, M., Verhagen, I., Viitaniemi, H. M., Laine, V. N., Visser, M. E., Husby, A., & van Oers, K. (2021). Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons. BMC Genomics, 22(1), [36]. https://doi.org/10.1186/s12864-020-07329-9

Rizaludin, M. S., Stopnisek, N., Raaijmakers, J. M., & Garbeva, P. (2021). The Chemistry of Stress: Understanding the ‘Cry for Help’ of Plant Roots. Metabolites, 11(6). https://doi.org/10.3390/metabo11060357

Costa, O. Y. A., & Kuramae, E. (2021). The influence of agar brands and micronutrients in the growth optimization of Granulicella sp. (Acidobacteriota). Journal of Microbiological Methods, 181, [106148]. https://doi.org/10.1016/j.mimet.2021.106148

Bulteel, L., Houwenhuyse, S., Declerck, S. A. J., & Decaestecker, E. (2021). The role of microbiome and genotype in Daphnia magna upon parasite re-exposure. Genes, 12(1), [70]. https://doi.org/10.3390/genes12010070

Chang, J., Sun, Y., Tian, L., Ji, L., Luo, S., Nasir, F., Kuramae, E., & Tian, C. (2021). The structure of rhizosphere fungal communities of wild and domesticated rice: changes in diversity and co-occurrence patterns. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.610823

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Wubs, E. R. J., van Heusden, T., Melchers, P. D., & Bezemer, T. M. (2019). Soil inoculation steers plant-soil feedback, supressing ruderal plant species. Frontiers in Ecology and Evolution, 7, [2019.00451]. https://doi.org/10.3389/fevo.2019.00451

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Huang, L., Xue, W., & Herben, T. (2019). Temporal niche differentiation among species changes with habitat productivity and light conditions. Journal of Vegetation Science, 30(3), 438-447. https://doi.org/10.1111/jvs.12741

Radeloff, V. C., Dubinin, M., Coops, N. C., Allen, A. M., Brooks, T. M., Clayton, M. K., Costa, G. C., Graham, C. H., Helmers, D. P., Ives, A. R., Kolesov, D., Pidgeon, A. M., Rapacciuolo, G., Razenkova, E., Suttidate, N., Young, B. E., Zhu, L., & Hobi, M. L. (2019). The Dynamic Habitat Indices (DHIs) from MODIS and global biodiversity. Remote Sensing of Environment, 222, 204-214. https://doi.org/10.1016/j.rse.2018.12.009

Vazquez, C., de Goede, R. G. M., Korthals, G. W., Rutgers, M., Schouten, A. J., & Creamer, R. (2019). The effects of increasing land use intensity on soil nematodes: A turn towards specialism. Functional Ecology, 33(10), 2003-2016. https://doi.org/10.1111/1365-2435.13417

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Geshnizjani, N., Khorami, S. S., Willems, L. A. J., Snoek, B. L., Hilhorst, H. W. M., & Ligterink, W. (2019). The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality. Journal of Experimental Botany. https://doi.org/10.1093/jxb/erz101

Verhagen, I. C. (2019). The mechanisms underlying seasonal timing of breeding - a multi-level approachusing bi-directional genomic selection on timing of egg-laying (PhD Thesis). https://doi.org/10.18174/496393

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Ulgezen, Z. N., Käpylä, T., Meerlo, P., Spoelstra, K., Visser, M. E., & Dominoni, D. M. (2019). The preference and costs of sleeping under light at night in forest and urban great tits. Proceedings of the Royal Society B-Biological Sciences, 286(1905), [20190872]. https://doi.org/10.1098/rspb.2019.0872

Heinze, J., Simons, N. K., Seibold, S., Wacker, A., Weithoff, G., Gossner, M. M., Prati, D., Bezemer, T. M., & Joshi, J. (2019). The relative importance of plant-soil feedbacks for plant-species performance increases with decreasing intensity of herbivory. Oecologia, 190, 651-664. https://doi.org/10.1007/s00442-019-04442-9)

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Janse, J. H., van Dam, A. A., Hes, E. M. A., de Klein, J. J. M., Finlayson, C. M., Janssen, A. B. G., van Wijk, D., Mooij, W. M., & Verhoeven, J. T. A. (2019). Towards a global model for wetlands ecosystem services. Current Opinion in Environmental Sustainability, 36, 11-19. https://doi.org/10.1016/j.cosust.2018.09.002

Teurlincx, S., Kuiper, J. J., Hoevenaar, E. C. M., Lurling, M., Brederveld, R. J., Veraart, A. J., Janssen, A. B. G., Mooij, W. M., & Domis, L. N. D. S. (2019). Towards restoring urban waters: understanding the main pressures. Current Opinion in Environmental Sustainability, 36, 49-58. https://doi.org/10.1016/j.cosust.2018.10.011

Jovic, K., Grilli, J., Sterken, M. G., Snoek, B. L., Riksen, J. A. G., Allesina, S., & Kammenga, J. E. (2019). Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans. BMC Biology, 17(1), 102. https://doi.org/10.1186/s12915-019-0725-6

Thakur, M. P., & Geisen, S. (2019). Trophic regulations of the soil microbiome. Trends in Microbiology, 27(9). https://doi.org/10.1016/j.tim.2019.04.008

Baldan, D., Hinde, C. A., & Lessells, C. M. (2019). Turn-taking between provisioning parents: partitioning alternation. Frontiers in Ecology and Evolution, 7, [448]. https://doi.org/10.3389/fevo.2019.00448

Atema, E., Mulder, E., van Noordwijk, A. J., & Verhulst, S. (2019). Ultralong telomeres shorten with age in nestling great tits but are static in adults and mask attrition of short telomeres. Molecular Ecology Resources, 19, 648-658. https://doi.org/10.1111/1755-0998.12996

Ho, A., Lee, H. J., Reumer, M. R., Meima-Franke, M., Raaijmakers, C. E., Zweers, A. J., De Boer, W., van der Putten, W. H., & Bodelier, P. L. E. (2019). Unexpected role of canonical aerobic methanotrophs in upland agricultural soils. Soil Biology & Biochemistry, 131(April), [1-8]. https://doi.org/10.1016/j.soilbio.2018.12.020

Fry, E. L., De Long, J. R., Álvarez Garrido, L., Alvarez, N., Carrillo, Y., Castañeda-Gómez, L., Chomel, M., Dondini, M., Drake, J. E., Hasegawa, S., Hortal, S., Jackson, B. G., Jiang, M., Lavallee, J. M., Medlyn, B. E., Rhymes, J., Singh, B. K., Smith, P., Anderson, I. C.,... Johnson, D. (2019). Using plant, microbe, and soil fauna traits to improve the predictive power of biogeochemical models. Methods in Ecology and Evolution, 10(1), 146-157. https://doi.org/10.1111/2041-210X.13092

Gols, R., Desurmont, G. A., & Harvey, J. A. (2019). Variation in Performance and Resistance to Parasitism of Plutella xylostella Populations. Insects, 10, [293]. https://doi.org/10.3390/insects10090293

Gols, R., Ros, V. I. D., Ode, P. J., Vyas, D., & Harvey, J. A. (2019). Varying degree of physiological integration among host instars and their endoparasitoid affects stress-induced mortality. Entomologia Experimentalis et Applicata, 167(5), 424-432. https://doi.org/10.1111/eea.12765

Moisan, K., Cordovez, V., van de Zande, E. M., Raaijmakers, J. M., Dicke, M., & Lucas-Barbosa, D. (2019). Volatiles of pathogenic and non-pathogenic soil-borne fungi affect plant development and resistance to insects. Oecologia, 190(3), 589-604. https://doi.org/10.1007/s00442-019-04433-w

De Long, J., Ellen, F., Veen, G. F., & Kardol, P. (2019). Why are plant-soil feedbacks so unpredictable, and what to do about it? Functional Ecology, 33(1), 118-128. https://doi.org/10.1111/1365-2435.13232

Schreven, K. H. T., & Hammer, S. (2019). Why do afternoon copulations mainly occur after the egg-laying peak date in a colony of Great Skuas on Skúvoy, Faroe Islands? Dansk Ornitologisk Forenings Tidsskrift, 113(2), 65-70. http://pub.dof.dk/dof/DOFT/Why_do_afternoon_copulations.pdf

Barel, J. M., Kuyper, T. W., Paul, J., de Boer, W., Cornelissen, J. H. C., & De Deyn, G. B. (2019). Winter cover crop legacy effects on litter decomposition act through litter quality and microbial community changes. Journal of Applied Ecology, 56(1), 132-143. https://doi.org/10.1111/1365-2664.13261

Pot, M., de Koning, S., Westerduin, C., de Boer, W. F., Shariati Najafabadi, M., & Lameris, T. (2019). Wintering geese trade-off energetic gains and costs when switching from agricultural to natural habitats. Ardea, 107(2), 183. https://doi.org/10.5253/arde.v107i2.a6

Kuramae, E. E., Leite, M. F. A., Suleiman, A. K. A., Gough, C. M., Castillo, B., Faller, L., Franklin, R., & Syring, J. (2019). Wood Decay Characteristics and Interspecific Interactions Control Bacterial Community Succession in Populus grandidentata (Bigtooth Aspen). Frontiers in Microbiology, 10, [2019.00979]. https://doi.org/10.3389/fmicb.2019.00979

Ger, K. A., Naus-Wiezer, S., De Meester, L., & Lürling, M. (2019). Zooplankton grazing selectivity regulates herbivory and dominance of toxic phytoplankton over multiple prey generations. Limnology and Oceanography, 64(3), 1214-1227. https://doi.org/10.1002/lno.11108

Stötter, T., Bastviken, D., Bodelier, P. L. E., Hardenbroek, M. V., Rinta, P., Schilder, J., Schubert, C. J., & Heiri, O. (2018). Abundance and δ13C values of fatty acids in lacustrine surface sediments: Relationships with in-lake methane concentrations. Quaternary Science Reviews, 191, 337 - 347. https://doi.org/10.1016/j.quascirev.2018.04.029

van Herwijnen, M. J. C., Driedonks, T. A. P., Snoek, B. L., Kroon, A. M. T., Kleinjan, M., Jorritsma, R., Pieterse, C. M. J., Hoen, E. N. M. N., & Wauben, M. H. M. (2018). Abundantly Present miRNAs in Milk-Derived Extracellular Vesicles Are Conserved Between Mammals. Frontiers in Nutrition, 5, 81. https://doi.org/10.3389/fnut.2018.00081

Mantzouki, E., Campbell, J., van Loon, E., Visser, P., Konstantinou, I., Antoniou, M., Giuliani, G., Machado-Vieira, D., Gurjão de Oliveira, A., Maronić, D. Š., Stević, F., Pfeiffer, T. Ž., Vucelić, I. B., Žutinić, P., Udovič, M. G., Plenković-Moraj, A., Tsiarta, N., Bláha, L., Geriš, R.,... Ibelings, B. W. (2018). A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins. Scientific data, 5, [180226]. https://doi.org/10.1038/sdata.2018.226

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Kim, J-M., Santure, A. W., Barton, H. J., Quinn, J. L., Cole, E. F., Great Tit HapMap Consortium, Visser, M. E., Sheldon, B. C., Groenen, M. A. M., van Oers, K., & Slate, J. (2018). A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour. Molecular Ecology Resources, 18(4), 877-891. https://doi.org/10.1111/1755-0998.12778

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Harvey, J. A., Visser, B., Lammers, M., Marien, J., Gershenzon, J., Ode, P. J., Heinen, R., Gols, R., & Ellers, J. (2018). Ant-like Traits in Wingless Parasitoids Repel Attack from Wolf Spiders. Journal of Chemical Ecology, 44(10), 894-904. https://doi.org/10.1007/s10886-018-0989-2

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Wood, K. A., Nuijten, R. J. M., Newth, J. L., Haitjema, T., Vangeluwe, D., Ionnidis, P., Harrison, A. L., Mackenzie, C., Hilton, G. M., Nolet, B. A., & Rees, E. C. (2018). Apparent survival of an Arctic-breeding migratory bird over 44 years of fluctuating population size. Ibis, 160(2), 413-430. https://doi.org/10.1111/ibi.12521

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Understanding disease suppressive soils: molecular and chemical identification of microorganisms and mechanisms involved in soil suppressiveness to Fusarium culmorum of wheat

Unraveling hidden biodiversity: An example of integrative taxonomy applied to the hybridizing Brachionus calyciflorus species complex

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