Publications

Theses

Lessons from the Amazon biome: impact of management practices on aboveground-belowground interactions

Thesis

Wednesday, 9 March, 2022

Linking microbial inoculants and associated changes in the soil microbiome to plant-soil performance in degraded lands

Thesis

Wednesday, 22 December, 2021

more theses

Recent scientific publications (2017 - )

For more information, please contact the NIOO library

Brown, J. M., Bouten, W., Camphuysen, K. C. J., Nolet, B. A., & Shamoun-Baranes, J. (2022). Acceleration as a proxy for energy expenditure in a facultative-soaring bird. Functional Ecology, In press. https://doi.org/10.1111/1365-2435.14055

Lammers, A., Lalk, M., & Garbeva, P. (2022). Air Ambulance: The Antimicrobial Power of Bacterial Volatiles. Antibiotics, 11, [109]. https://doi.org/10.3390/antibiotics11010109

Lourenço, K. S., Costa, O. Y. D. A., Cantarella, H., & Kuramae, E. E. (2022). Ammonia-oxidizing bacteria and fungal denitrifier diversity are associated with N₂O production in tropical soils. Soil Biology and Biochemistry, 166, [108563]. https://doi.org/10.1016/j.soilbio.2022.108563

Tennyson, A. J. D., & Tomotani, B. M. (2022). A new fossil species of kiwi (Aves: Apterygidae) from the mid-Pleistocene of New Zealand. Historical Biology, 34. https://doi.org/10.1080/08912963.2021.1916011

Cuenca-Cambronero, M., Courtney-Mustaphi, C. J., Greenway, R., Heiri, O., Hudson, C. M., King, L., Lemmen, K. D., Moosmann, M., Muschick, M., Ngoepe, N., Seehausen, O., & Matthews, B. (2022). An integrative paleolimnological approach for studying evolutionary processes. Trends in Ecology and Evolution, In press. https://doi.org/10.1016/j.tree.2022.01.007

Navarro-Ramos, M. J., Green, A. J., Lovas-Kiss, A., Roman, J., Brides, K., & van Leeuwen, C. H. A. (2022). A predatory waterbird as a vector of plant seeds and aquatic invertebrates. Freshwater Biology, 67(4), 657-671. https://doi.org/10.1111/fwb.13870

Liu, X., Raaijmakers, C. E., Vrieling, K., Lommen, S. T. E., & Bezemer, T. M. (2022). Associational resistance to nematodes and its effects on interspecific interactions among grassland plants. Plant and Soil, 471, 591–607. https://doi.org/10.1007/s11104-021-05238-8

Zhang, J., Klinkhamer, P. G. L., Vrieling, K., & Martijn Bezemer, T. (2022). Belowground responses of bacterial communities to foliar SA application over four plant generations. Plant and Soil, 470, 65–79. https://doi.org/10.1007/s11104-021-05158-7

Nazari, M., Bickel, S., Benard, P., Mason-Jones, K., Carminati, A., & Dippold, M. A. (2022). Biogels in Soils: Plant Mucilage as a Biofilm Matrix That Shapes the Rhizosphere Microbial Habitat. Frontiers in Plant Science, 12, [798992]. https://doi.org/10.3389/fpls.2021.798992

Avalos Garcia, M., Garbeva, P., Vader, L., van Wezel, G., Dickschat, J. S., & Ulanova, D. (2022). Biosynthesis, Evolution and Ecology of Microbial Terpenoids. Natural Product Reports, 39(2), 249-272. https://doi.org/10.1039/D1NP00047K

Tian, L., Chang, J., Shi, S., Ji, L., Zhang, J., Sun, Y., Li, X., Li, X., Xie, H., Cai, Y., Chen, D., Wang, J., van Veen, J. A., Kuramae, E., Phan Tran, L-S., & Tian, C. (2022). Comparison of methane metabolism in the rhizomicrobiomes of wild and related cultivated rice accessions reveals a strong impact of crop domestication. Science of the Total Environment, 803, [150131]. https://doi.org/10.1016/j.scitotenv.2021.150131

Geisen, S., Heinen, R., Andreou, E., van Lent, T., ten Hooven, F. C., & Thakur, M. P. (2022). Contrasting effects of soil microbial interactions on growth–defence relationships between early- and mid-successional plant communities. New Phytologist, 233(3), 1345-1357. https://doi.org/10.1111/nph.17609

Jassey, V. E. J., Walcker, R., Kardol, P., Geisen, S., Heger, T., Lamentowicz, M., Hamard, S., & Lara, E. (2022). Contribution of soil algae to the global carbon cycle. New Phytologist, 234(1), 64-76. https://doi.org/10.1111/nph.17950

Zaova, D., Cvetkoska, A., Wagner, B., Francke, A., Vogel, H., Levkov, Z., & Jovanovska, E. (2022). Diatom community responses to environmental change in Lake Ohrid (Balkan Peninsula) during the mid-Pleistocene Transition. Quaternary International, 622, 1-9. https://doi.org/10.1016/j.quaint.2022.03.002

Velthuis, M., Keuskamp, J., Bakker, E. S., Boersma, M., Sommer, U., van Donk, E., & van de Waal, D. B. (2022). Differential effects of elevated pCO2 and warming on marine phytoplankton stoichiometry. Limnology and Oceanography, 67(3), 598-607. https://doi.org/10.1002/lno.12020

Borer, E. T., Paseka, R., Peace, A., Asik, L., Everett, R., Frenken, T., González, A., Strauss, A. T., van de Waal, D. B., White, L. A., & Seabloom, E. W. (2022). Disease-mediated nutrient dynamics: Coupling host-pathogen interactions with ecosystem elements and energy. Ecological Monographs, 92(2), [e1510]. https://doi.org/10.1002/ecm.1510

Drost, S. M. (2022). Does diversity matter? Soil microbial functioning and greenhouse gas fluxes in cover crop mixtures (PhD Thesis). Wageningen University. https://doi.org/10.18174/563566

Munthali, E., Marcé, R., & Farré, M. J. (2022). Drivers of variability in disinfection by-product formation potential in a chain of thermally stratified drinking water reservoirs. Environmental Science: Water Research & Technology, 8, 968-980. https://doi.org/10.1039/d1ew00788b

Kim, B., Westerhuis, J. A., Smilde, A. K., Floková, K., Suleiman, A. K. A., Kuramae, E., Bouwmeester, H. J., & Zancarini, A. (2022). Effect of strigolactones on recruitment of the rice root-associated microbiome. FEMS Microbiology Ecology, 98(2), 12. [fiac010]. https://doi.org/10.1093/femsec/fiac010

Zhao, Z., Gan, Y., He, H., Zhou, L., Li, K., Liu, Z., Wu, Q., & Su, Y. (2022). Effects of ancient allochthonous and contemporary autochthonous organic carbon on the growth and reproduction of lake zooplankton. Freshwater Biology, 67(5), 873-882. https://doi.org/10.1111/fwb.13887

Luo, Y., Chen, S., van Veelen, H. P. J., Sechi, V., ter Heijne, A., Veeken, A., Buisman, C. J. N., & Bezemer, T. M. (2022). Effects of sterilization and maturity of compost on soil bacterial and fungal communities and wheat growth. Geoderma, 409, [115598]. https://doi.org/0.1016/j.geoderma.2021.115598

Jovanovska, E., Hauffe, T., Stelbrink, B., Cvetkoska, A., Levkov, Z., Wagner, B., Lacey, J. H., Ognjanova-Rumenova, N., Hamilton, P. B., Brandenburg, K. M., Albrecht, C., & Wilke, T. (2022). Environmental filtering drives assembly of diatom communities over evolutionary time-scales. Global Ecology and Biogeography, 31(5), 954-967. https://doi.org/10.1111/geb.13471

Gawehns, F., Postuma, M., van Antro, M., Nunn, A., Sepers, B., Fatma, S., van Gurp, T. P., Wagemaker, N. C. A. M., Mateman, A. C., Milanovic-Ivanovic, S., Groβe, I., van Oers, K., Vergeer, P., & Verhoeven, K. J. F. (2022). epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing. Molecular Ecology Resources, In press. https://doi.org/10.1111/1755-0998.13597

Harvey, J. A. (2022). Evaluating the effects of the invasive cane toad (Rhinella marina) on island biodiversity, focusing on the Philippines. Pacific Conservation Biology.

Lemmen, K., Verhoeven, K., & Declerck, S. A. J. (2022). Experimental evidence of rapid heritable adaptation in the absence of initial standing genetic variation. Functional Ecology, 36(1), 226-238. https://doi.org/10.1111/1365-2435.13943

Díaz, A. S. L., Rizaludin, M. S., Zweers, H., Raaijmakers, J. M., & Garbeva, P. (2022). Exploring the Volatiles Released from Roots of Wild and Domesticated Tomato Plants under Insect Attack. Molecules, 27(5), [1612]. https://doi.org/10.3390/molecules27051612

Tomotani, B. M., Salvador, R. B., Sabadel, A. J. M., Miskelly, C. M., Brown, J. C. S., Delgado, J., Boussès, P., Cherel, Y., Waugh, S. M., & Bury, S. J. (2022). Extreme bill dimorphism leads to different but overlapping isotopic niches and similar trophic positions in sexes of the charismatic extinct huia. Oecologia, 198, 67–77. https://doi.org/10.1007/s00442-021-05082-8

Ode, P. J., Vyas, D. K., & Harvey, J. A. (2022). Extrinsic Inter- and Intraspecific Competition in Parasitoid Wasps. Annual Review of Entomology, 67, 305-328. https://doi.org/10.1146/annurev-ento-071421-073524

Momesso, L., Crusciol, C. A. C., Nascimento, C. A. C., Soratto, R. P., Canisares, L. P., Moretti, L. G., Rosolem, C. A., Trivelin, P. C. O., Kuramae, E., & Cantarella, H. (2022). Feasibility of early fertilization of maize with 15N application to preceding cover crop. European Journal of Agronomy, 135, [126485]. https://doi.org/10.1016/j.eja.2022.126485

Smulders, F. O. H., Becker, S. T., Campbell, J. E., Bakker, E. S., Boässon, M. J., Bouwmeester, M. M., Vonk, J. A., & Christianen, M. J. A. (2022). Fish grazing enhanced by nutrient enrichment may limit invasive seagrass expansion. Aquatic Botany, 176, [103464]. https://doi.org/10.1016/j.aquabot.2021.103464

Heinen, R., Thakur, M. P., Hiddes De Fries, J. R., Steinauer, K., Vandenbrande, S., Jongen, R., & Bezemer, T. M. (2022). Foliar herbivory on plants creates soil legacy effects that impact future insect herbivore growth via changes in plant community biomass allocation. Functional Ecology, 36(4), 1047-1062. https://doi.org/10.1111/1365-2435.14006

Momesso, L., Crusciol, C. A. C., Leite, M. F. A., Bossolani, J. W., & Kuramae, E. (2022). Forage grasses steer soil nitrogen processes, microbial populations, and microbiome composition in a long-term tropical agriculture system. Agriculture, Ecosystems and Environment, 323, [107688]. https://doi.org/10.1016/j.agee.2021.107688

Lembrechts, J. J., van den Hoogen, J., Aalto, J., Ashcroft, M. B., De Frenne, P., Kemppinen, J., Kopecký, M., Luoto, M., Maclean, I. M. D., Crowther, T. W., Bailey, J. J., Haesen, S., Klinges, D. H., Niittynen, P., Scheffers, B. R., Van Meerbeek, K., Aartsma, P., Abdalaze, O., Abedi, M.,... Lenoir, J. (2022). Global maps of soil temperature. Global Change Biology, 28(9), 3110-3144. https://doi.org/10.1111/gcb.16060

Temmink, R. J. M., van den Akker, M., van Leeuwen, C. H. A., Thöle, Y., Olff, H., Reijers, V. C., Weideveld, S. T. J., Robroek, B. J. M., Lamers, L. P. M., & Bakker, E. S. (2022). Herbivore exclusion and active planting stimulate reed marsh development on a newly constructed archipelago. Ecological Engineering, 175, [106474]. https://doi.org/10.1016/j.ecoleng.2021.106474

Zhan, Q., Kong, X., & Rinke, K. (2022). High-frequency monitoring enables operational opportunities to reduce the dissolved organic carbon (DOC) load in Germany’s largest drinking water reservoir. Inland Waters, 12(2), 245-260. https://doi.org/10.1080/20442041.2021.1987796

Bruijning, M., Fossen, E. I. F., Jongejans, E., Vanvelk, H., Raeymaekers, J. A. M., Govaert, L., Brans, K. I., Einum, S., & De Meester, L. (2022). Host–parasite dynamics shaped by temperature and genotype: Quantifying the role of underlying vital rates. Functional Ecology, 36(2), 485-499. https://doi.org/10.1111/1365-2435.13966

Jin, H., van Leeuwen, C. H. A., Van de Waal, D. B., & Bakker, E. S. (2022). Impacts of sediment resuspension on phytoplankton biomass production and trophic transfer: Implications for shallow lake restoration. Science of the Total Environment, 808, [152156]. https://doi.org/10.1016/j.scitotenv.2021.152156

Jin, H., van Leeuwen, C. H. A., Temmink, R. J. M., & Bakker, E. S. (2022). Impacts of shelter on the relative dominance of primary producers and trophic transfer efficiency in aquatic food webs: Implications for shallow lake restoration. Freshwater Biology, 67(6), 1107-1122. https://doi.org/10.1111/fwb.13904

Gutiérrez, R., Vargas, F. J. G., Lorenzo, J. A., & De Vries, P. (2022). Influx of Saharan species to Canary Islands after calima storm in February 2020. Dutchbirding, 44(1), 1-16.

Barrágan-Fonseca, K. Y., Nurfikari, A., van de Zande, E. M., Wantulla, M., van Loon, J. J. A., de Boer, W., & Dicke, M. (2022). Insect frass and exuviae to promote plant growth and health. Trends in Plant Science, In press. https://doi.org/10.1016/j.tplants.2022.01.007

Dominoni, D. M., de Jong, M., van Oers, K., O’Shaughnessy, P., Blackburn, G. J., Atema, E., Mateman, A. C., D’Amelio, P. B., Trost, L., Bellingham, M., Clark, J., Visser, M. E., & Helm, B. (2022). Integrated molecular and behavioural data reveal deep circadian disruption in response to artificial light at night in male Great tits (Parus major). Scientific Reports, 12(1), [1553]. https://doi.org/10.1038/s41598-022-05059-4

Zhang, W., & Declerck, S. A. J. (2022). Intrinsic postzygotic barriers constrain cross-fertilisation between two hybridising sibling rotifer species of the Brachionus calyciflorus species complex. Freshwater Biology, 67(2), 240-249. https://doi.org/10.1111/fwb.13727

Wilbers, G. J., de Bruin, K., Seifert-Dähnn, I., Lekkerkerk, W., Li, H., & Budding-Polo Ballinas, M. (2022). Investing in Urban Blue–Green Infrastructure—Assessing the Costs and Benefits of Stormwater Management in a Peri-Urban Catchment in Oslo, Norway. Sustainability (Switzerland), 14(3), [1934]. https://doi.org/10.3390/su14031934

Villar, N., Rocha-Mendes, F., Guevara, R., & Galetti, M. (2022). Large herbivore-palm interactions modulate the spatial structure of seedling communities and productivity in Neotropical forests. Perspectives in Ecology and Conservation, 20(1), 45-59. https://doi.org/10.1016/j.pecon.2021.10.005

Souza, Y., Villar, N., Zipparro, V., Nazareth, S., & Galetti, M. (2022). Large mammalian herbivores modulate plant growth form diversity in a tropical rainforest. Journal of Ecology, 110(4). https://doi.org/10.1111/1365-2745.13846

Leite, M. F. A. (2022). Lessons from the Amazon biome: impact of management practices on aboveground-belowground interactions (PhD Thesis). Utrecht University. https://doi.org/10.33540/820

Resch, M. C., Schütz, M., Ochoa-Hueso, R., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., & Risch, A. C. (2022). Long-term recovery of above- and below-ground interactions in restored grasslands after topsoil removal and seed addition. Journal of Applied Ecology, In press. https://doi.org/10.1111/1365-2664.14145

Frauendorf, M., Allen, A. M., Jongejans, E., Ens, B. J., Teunissen, W., Kampichler, C., van Turnhout, C. A. M., Bailey, L. D., de Kroon, H., Cremer, J., Kleyheeg, E., Nienhuis, J., & van de Pol, M. (2022). Love thy neighbour?—Spatial variation in density dependence of nest survival in relation to predator community. Diversity and Distributions, 28(4), 624-635. https://doi.org/10.1111/ddi.13457

van Eekeren, N., Jongejans, E., van Agtmaal, M., Guo, Y., van der Velden, M., Versteeg, C., & Siepel, H. (2022). Microarthropod communities and their ecosystem services restore when permanent grassland with mowing or low-intensity grazing is installed. Agriculture, Ecosystems and Environment, 323, [107682]. https://doi.org/10.1016/j.agee.2021.107682

Breidenbach, A., Schleuss, P-M., Liu, S., Schneider, D., Dippold, M. A., de la Haye, T., Miehe, G., Heitkamp, F., Seeber, E., Mason-Jones, K. E., Xu, X., Huanming, Y., Dorij, T., Gube, M., Norf, H., Meier, J., Guggenberger, G., Kuzyakov, Y., & Spielvogel, S. (2022). Microbial functional changes mark irreversible course of Tibetan grassland degradation. Nature Communications, 13, [2681]. https://doi.org/10.1038/s41467-022-30047-7

Kuerban, M., Cong, W-F., Jing, J., & Bezemer, T. M. (2022). Microbial soil legacies of crops under different water and nitrogen levels determine succeeding crop performance. Plant and Soil, In press. https://doi.org/10.1007/s11104-022-05412-6

Mason-Jones, K. E., Robinson, S. L., Veen, G. F., Manzoni, S., & van der Putten, W. H. (2022). Microbial storage and its implications for soil ecology. ISME Journal, 16, 617–629. https://doi.org/10.1038/s41396-021-01110-w

Benti, G. M., Rybka, D., Klein Gunnewiek, P. J. A., Tessema, T., Raaijmakers, J. M., & Etalo, D. (2022). Molecular detection and quantification of the Striga seedbank in agricultural soils. Weed Research, In press. https://doi.org/10.1111/wre.12535

Peeters, E. T. H. M., Gerritsen, A. A. M., Seelen, L. M. S., Begheyn, M., Rienks, F., & Teurlincx, S. (2022). Monitoring biological water quality by volunteers complements professional assessments. PLoS One, 17(2), [e0263899]. https://doi.org/10.1371/journal.pone.0263899

Gómez-González, S., Paniw, M., Blanco-Pastor, J. L., García-Cervigón, A. I., Godoy, O., Herrera, J. M., Lara, A., Miranda, A., Ojeda, F., & Ochoa-Hueso, R. (2022). Moving towards the ecological intensification of tree plantations. Trends in Plant Science, In press. https://doi.org/10.1016/j.tplants.2021.12.009

Lindner, M., Gawehns, F., te Molder, S., Visser, M. E., van Oers, K., & Laine, V. N. (2022). Performance of methods to detect genetic variants from bisulphite sequencing data in a non-model species. Molecular Ecology Resources, 22(2), 834-846. https://doi.org/10.1111/1755-0998.13493

Trebuch, L. M. (2022). Photogranules for wastewater treatment: From community assembly to targeted microbial functions (PhD Thesis). Wageningen University. https://doi.org/10.18174/562026

Schulhof, M. A. S., van de Waal, D. B., Declerck, S. A. J., & Shurin, J. B. (2022). Phytoplankton functional composition determines limitation by nutrients and grazers across a lake productivity gradient. Ecosphere, 13(3), [e4008]. https://doi.org/10.1002/ecs2.4008

Maberly, S. C., van de Waal, D. B., & Raven, J. (2022). Phytoplankton Growth and Nutrients. In Reference Module in Earth Systems and Environmental Sciences Elsevier Inc.. https://doi.org/10.1016/B978-0-12-819166-8.00111-0

Stelzer, J. A. A., Mesman, J. P., Gsell, A., de Senerpont Domis, L., Visser, P. M., Adrian, R., & Ibelings, B. W. (2022). Phytoplankton responses to repeated pulse perturbations imposed on a trend of increasing eutrophication. Ecology and Evolution, 12(3), [e8675]. https://doi.org/10.1002/ece3.8675

Sueiro, R. A., Leiro, J. M., Blanco-Abad, V., Raaijmakers, J. M., de Bruijn, I., Dirks, R. P. H., & Lamas, J. (2022). Plant- and bacteria-derived compounds with anti-Philasterides dicentrarchi activity. Pathogens, 11(2), [267]. https://doi.org/10.3390/pathogens11020267

Ampt, E., van Ruijven, J., Zwart, M., Raaijmakers, J. M., Termorshuizen, A. J., & Mommer, L. (2022). Plant neighbours can make or break the disease transmission chain of a fungal root pathogen. New Phytologist, 233(3), 1303-1316. https://doi.org/10.1111/nph.17866

Eppinga, M. B., Van der Putten, W. H., & Bever, J. D. (2022). Plant-soil feedback as a driver of spatial structure in ecosystems: A commentary on “Belowground feedbacks as drivers of spatial self-organization and community assembly” by Inderjit, Ragan M. Callaway and Ehud Meron. Physics of Life Reviews, 40, 6-14. https://doi.org/10.1016/j.plrev.2022.01.001

Qi, Y., Ossowicki, A., Yergeau, É., Vigani, G., Geissen, V., & Garbeva, P. (2022). Plastic mulch film residues in agriculture: impact on soil suppressiveness, plant growth and microbial communities. FEMS Microbiology Ecology, 98(2), [fiac017]. https://doi.org/10.1093/femsec/fiac017

Boom, M. P., van der Jeugd, H. P., Steffani, B., Nolet, B. A., Larsson, K., & Eichhorn, G. (2022). Postnatal growth rate varies with latitude in range-expanding geese: The role of plasticity and day length. Journal of Animal Ecology, 91(2), 417-427. https://doi.org/10.1111/1365-2656.13638

Su, L., Qiu, P., Fang, Z., Sun, J., Mo, X., Liu, Y., Kuramae, E., Zhang, R., Shen, B., & Shen, Q. (2022). Potassium phosphite enhances the antagonistic capability of Bacillus amyloliquefaciens to manage tomato bacterial wilt. Plant Disease, 106(2). https://doi.org/10.1094/PDIS-08-21-1601-RE

Vaulot, D., Geisen, S., Mahé, F., & Bass, D. (2022). pr2-primers: An 18S rRNA primer database for protists. Molecular Ecology Resources, 22(1), 168-179. https://doi.org/10.1101/2021.01.04.425170, https://doi.org/10.1111/1755-0998.13465

Harvey, J. A. (2022). Prey availability affects developmental trade-offs and sexual-size dimorphism in the false widow spider, Steatoda grossa. Journal of Insect Physiology, 136, [104267]. https://doi.org/10.1016/j.jinsphys.2021.104267

Naguib, M., Titulaer, M., Waas, J. R., van Oers, K., Sprau, P., & Snijders, L. (2022). Prior territorial responses and home range size predict territory defense in radio-tagged great tits. Behavioral Ecology and Sociobiology, 76(3), [35]. https://doi.org/10.1007/s00265-022-03143-3

Fay, R., Authier, M., Hamel, S., Jenouvrier, S., van de Pol, M., Cam, E., Gaillard, J. M., Yoccoz, N. G., Acker, P., Allen, A., Aubry, L. M., Bonenfant, C., Caswell, H., Coste, C. F. D., Larue, B., Le Coeur, C., Gamelon, M., Macdonald, K. R., Moiron, M.,... Sæther, B. E. (2022). Quantifying fixed individual heterogeneity in demographic parameters: Performance of correlated random effects for Bernoulli variables. Methods in Ecology and Evolution, 13(1), 91-104. https://doi.org/10.1111/2041-210X.13728

Zhang, W., & Declerck, S. A. J. (2022). Reduced fertilization constitutes an important prezygotic reproductive barrier between two sibling species of the hybridizing Brachionus calyciflorus species complex. Hydrobiologia, 849, 1701–1711. https://doi.org/10.1007/s10750-022-04814-y

Thunnissen, N. W., de Waart, S. A., Collas, F. P. L., Jongejans, E., Hendriks, A. J., van der Velde, G., & Leuven, R. S. E. W. (2022). Risk screening and management of alien terrestrial planarians in The Netherlands. Management of Biological Invasions, 13(1), 81-100. https://doi.org/10.3391/mbi.2022.13.1.05

De Vries, E. H. J., Foppen, R. P. B., Van Der Jeugd, H., & Jongejans, E. (2022). Searching for the causes of decline in the Dutch population of European Turtle Doves (Streptopelia turtur). Ibis, 164(2), 552-573. https://doi.org/10.1111/ibi.13031

Alderliesten, J. B., Zwart, M. P., de Visser, J. A. G. M., Stegeman, A., & Fischer, E. A. J. (2022). Second compartment widens plasmid invasion conditions: Two-compartment pair-formation model of conjugation in the gut. Journal of Theoretical Biology, 533, [110937]. https://doi.org/10.1016/j.jtbi.2021.110937

Seelen, L. M. S., Teurlincx, S., Armstrong, M. R., Lürling, M., van Donk, E., & de Senerpont Domis, L. N. (2022). Serving many masters at once: a framework for assessing ecosystem services delivered by quarry lakes. Inland Waters, 12(1), 121-137. https://doi.org/10.1080/20442041.2021.1944765

Zhang, J., Ai, Z., Liu, H., Tang, D. W. S., Yang, X., Wang, G., Liu, Y., Liu, G., Morriën, E., & Xue, S. (2022). Short-term N addition in a Pinus tabuliformis plantation: Microbial community composition and interactions show different linkages with ecological stoichiometry. Applied Soil Ecology, 174, [104422]. https://doi.org/10.1016/j.apsoil.2022.104422

van Wijk, D., Teurlincx, S., Brederveld, R. J., de Klein, J. J. M., Janssen, A. B. G., Kramer, L., Van Gerven, L. P. A., Kroeze, C., & Mooij, W. M. (2022). Smart Nutrient Retention Networks: a novel approach for nutrient conservation through water quality management. Inland Waters, 12(1), 138-153. https://doi.org/10.1080/20442041.2020.1870852

Rowe, M., van Oort, A., Brouwer, L., Lifjeld, J. T., Webster, M. S., Welklin, J. F., & Baldassarre, D. T. (2022). Sperm Numbers as a Paternity Guard in a Wild Bird. Cells, 11(2), [231]. https://doi.org/10.3390/cells11020231

Yang, S., Poorter, L., Kuramae, E., Sass-Klaassen, U., Leite, M. F. A., Costa, O. Y. A., Kowalchuk, G., Cornelissen, J. H. C., Van Hal, J., Goudzwaard, L., Hefting, M. M., Van Logtestijn, R. S. P., & Sterck, F. J. (2022). Stem traits, compartments, and tree species affect fungal communities on decaying wood. Environmental Microbiology, in press. https://doi.org/10.1111/1462-2920.15953

Huberty, M. D., Steinauer, K., Heinen, R., Jongen, R., Hannula, E., Choi, Y. H., & Bezemer, T. M. (2022). Temporal changes in plant soil feedback effects on microbial networks, leaf metabolomics and plant-insect interactions. Journal of Ecology, In press. https://doi.org/10.1111/1365-2745.13872

Medic, N., Varga, E., van de Waal, D. B., Ostenfeld Larsen, T., & Hansen, P. J. (2022). The coupling between irradiance, growth, photosynthesis and prymnesin cell quota and production in two strains of the bloom-forming haptophyte, Prymnesium parvum. Harmful Algae, 112, [102173]. https://doi.org/10.1016/j.hal.2022.102173

Allen, A. M., Jongejans, E., van de Pol, M., Ens, B. J., Frauendorf, M., van der Sluijs, M., & de Kroon, H. (2022). The demographic causes of population change vary across four decades in a long-lived shorebird. Ecology, 103(4), [e3615]. https://doi.org/10.1002/ecy.3615

Poelman, E. H., Cusumano, A., & De Boer, J. G. (2022). The Ecology of Hyperparasitoids. Annual Review of Entomology, 67, 143-161. https://doi.org/10.1146/annurev-ento-060921-072718

van der Kolk, H. J., Ens, B. J., Oosterbeek, K., Jongejans, E., & van de Pol, M. (2022). The hidden cost of disturbance: Eurasian Oystercatchers (Haematopus ostralegus) avoid a disturbed roost site during the tourist season. Ibis, 164(2), 437-450. https://doi.org/10.1111/ibi.13035

Schmidt, R., Wang, X-B., Garbeva, P., & Yergeau, E. (2022). The nitrification inhibitor nitrapyrin has non-target effects on the soil microbial community structure, composition and functions. Applied Soil Ecology, 171, [104350]. https://doi.org/10.1016/j.apsoil.2021.104350

van Bergeijk, D. A., Elsayed, S. S., Du, C., Santiago, I. N., Roseboom, A. M., Zhang, L., Carrión, V. J., Spaink, H. P., & van Wezel, G. P. (2022). The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces. Communications Chemistry, 5(1), [14]. https://doi.org/10.1038/s42004-022-00632-4

van Kats, N., Dieperink, C., van Rijswick, M., & de Senerpont Domis, L. (2022). Towards a good ecological status? The prospects for the third implementation cycle of the EU Water Framework Directive in the Netherlands. Water, 14(3), [486]. https://doi.org/10.3390/w14030486

Zhan, Q., Teurlincx, S., van Herpen, F., Raman, N. V., Lürling, M., Waajen, G., & de Senerpont Domis, L. N. (2022). Towards climate-robust water quality management: Testing the efficacy of different eutrophication control measures during a heatwave in an urban canal. Science of the Total Environment, 828, [154421]. https://doi.org/10.1016/j.scitotenv.2022.154421

Wang, X., Teng, Y., Ren, W., Li, Y., Yang, T., Chen, Y., Zhao, L., Zhang, H., & Kuramae, E. (2022). Variations of Bacterial and Diazotrophic Community Assemblies throughout the Soil Profile in Distinct Paddy Soil Types and Their Contributions to Soil Functionality. mSystems, 7(2), [e01047-21]. https://doi.org/10.1128/msystems.01047-21

McLean, N., Kruuk, L. E. B., van der Jeugd, H. P., Leech, D., van Turnhout, C. A. M., & van de Pol, M. (2022). Warming temperatures drive at least half of the magnitude of long-term trait changes in European birds. Proceedings of the National Academy of Sciences of the United States of America, 119(10), [e2105416119]. https://doi.org/10.1073/pnas.2105416119

Yang, J., Strokal, M., Kroeze, C., Ma, L., Bai, Z., Teurlincx, S., & Janssen, A. B. G. (2022). What is the pollution limit? Comparing nutrient loads with thresholds to improve water quality in Lake Baiyangdian. Science of the Total Environment, 807, [150710]. https://doi.org/10.1016/j.scitotenv.2021.150710

Emilia Hannula, S., & Morriën, E. (2022). Will fungi solve the carbon dilemma? Geoderma, 413, [115767]. https://doi.org/10.1016/j.geoderma.2022.115767

Petit, J., de Bruijn, I., Goldman, M. R. G., van den Brink, E., Pellikaan, W. F., Forlenza, M., & Wiegertjes, G. F. (2022). β-Glucan-Induced Immuno-Modulation: A Role for the Intestinal Microbiota and Short-Chain Fatty Acids in Common Carp. Frontiers in Immunology, 12, [761820]. https://doi.org/10.3389/fimmu.2021.761820

Hölker, F., Bolliger, J., Davies, T. W., Giavi, S., Jechow, A., Kalinkat, G., Longcore, T., Spoelstra, K., Tidau, S., Visser, M. E., & Knop, E. (2021). 11 Pressing Research Questions on How Light Pollution Affects Biodiversity. Frontiers in Ecology and Evolution, 9, [767177]. https://doi.org/10.3389/fevo.2021.767177

Oelmann, Y., Lange, M., Leimer, S., Roscher, C., Aburto, F., Alt, F., Bange, N., Berner, D., Boch, S., Boeddinghaus, R. S., Buscot, F., Dassen, S., De Deyn, G., Eisenhauer, N., Gleixner, G., Goldmann, K., Hölzel, N., Jochum, M., Kandeler, E.,... Wilcke, W. (2021). Above- and belowground biodiversity jointly tighten the P cycle in agricultural grasslands. Nature Communications, 12(1), [4431]. https://doi.org/10.1038/s41467-021-24714-4

Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A.,... van der Hooft, J. J. J. (2021). A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 17(4), 363-368. https://doi.org/10.1038/s41589-020-00724-z

Zhou, L., & Declerck, S. A. J. (2021). A critical assessment of the stoichiometric knife-edge: no evidence for artefacts caused by the experimental P-supplementation. Aquatic Ecology, 55, 1317–1325. https://doi.org/10.1007/s10452-021-09867-0

Bento, M. D. S., Barros, D. J., Araújo, M. G. D. S., Da Róz, R., Carvalho, G. A., Braga do Carmo, J., Toppa, R. H., Neu, V., Forsberg, B. R., Bodelier, P., Tsai, S. M., & Navarrete, A. A. (2021). Active methane processing microbes and the disproportionate role of NC10 phylum in methane mitigation in Amazonian floodplains. Biogeochemistry, 156, 293-317. https://doi.org/10.1007/s10533-021-00846-z

Berendse, F., Geerts, R. H. E. M., Elberse, W. T., Bezemer, T. M., Goedhart, P. W., Xue, W., Noordijk, E., ter Braak, C. J. F., & Korevaar, H. (2021). A matter of time: Recovery of plant species diversity in wild plant communities at declining nitrogen deposition. Diversity and Distributions, 27(7), 1180-1193. https://doi.org/10.1111/ddi.13266

Hunt, K. A., Forbes, J., Taub, F., Elliott, N., Hardwicke, J., Petersen, R., Stopnisek, N., Beck, D. A. C., & Stahl, D. A. (2021). An automated multiplexed turbidometric and data collection system for measuring growth kinetics of anaerobes dependent on gaseous substrates. Journal of Microbiological Methods, 188, [106294]. https://doi.org/10.1016/j.mimet.2021.106294

van de Peppel, L. J. J., Nieuwenhuis, M., Auxier, B., Grum-Grzhimaylo, A. A., Cárdenas, M. E., de Beer, Z. W., Lodge, D. J., Smith, M. E., Kuyper, T. W., Franco-Molano, A. E., Baroni, T. J., & Aanen, D. K. (2021). Ancestral predisposition toward a domesticated lifestyle in the termite-cultivated fungus Termitomyces. Current Biology, 31(19), 4413-4421.e5. https://doi.org/10.1016/j.cub.2021.07.070

Tennyson, A. J. D., & Tomotani, B. M. (2021). A new fossil species of procellaria (Aves: Procellariiformes) from the pliocene of New Zealand. Papeis Avulsos de Zoologia, 61, 1-11. [e20216116]. https://doi.org/10.11606/1807-0205/2021.61.16

Fox, A. D., Frederiksen, M., Heinicke, T., Clausen, K. K., & van der Jeugd, H. P. (2021). Annual survival estimates of Taiga Anser fabalis and Tundra Bean Geese A. serrirostris wintering in The Netherlands, 1967–1987. Journal of Ornithology, 162, 925–929. https://doi.org/10.1007/s10336-021-01883-z

Stevenson, M. A., Mcgowan, S., Pearson, E. J., Swann, G. E. A., Leng, M. J., Jones, V. J., Bailey, J. J., Huang, X., & Whiteford, E. (2021). Anthropocene climate warming enhances autochthonous carbon cycling in an upland Arctic lake, Disko Island, West Greenland. Biogeosciences, 18(8), 2465-2485. https://doi.org/10.5194/bg-18-2465-2021

Lammers, A., Zweers, H., Sandfeld, T., Bilde, T., Garbeva, P., Schramm, A., & Lalk, M. (2021). Antimicrobial Compounds in the Volatilome of Social Spider Communities. Frontiers in Microbiology, 12, [700693]. https://doi.org/10.3389/fmicb.2021.700693

Blin, K., Shaw, S., Kloosterman, A. M., Charlop-Powers, Z., Van Wezel, G. P., Medema, M. H., & Weber, T. (2021). AntiSMASH 6.0: Improving cluster detection and comparison capabilities. Nucleic Acids Research, 49(W1), W29-W35. https://doi.org/10.1093/nar/gkab335

Bircher, N., van Oers, K., & Naguib, M. (2021). Anyone listening? No evidence for eavesdropping on male singing interactions in the great tit, Parus major. Animal Behaviour, 176, 67-76. https://doi.org/10.1016/j.anbehav.2021.03.009

Barré, K., Spoelstra, K., Bas, Y., Challéat, S., Kiri Ing, R., Azam, C., Zissis, G., Lapostolle, D., Kerbiriou, C., & Le Viol, I. (2021). Artificial light may change flight patterns of bats near bridges along urban waterways. Animal Conservation, 24(2), 259-267. https://doi.org/10.1111/acv.12635

de Boer, J. G., Kuiper, A. P. S., Groot, J., & van Loon, J. J. A. (2021). Avoidance of the Plant Hormone Cis-Jasmone by Aedes aegypti Depends On Mosquito Age in Both Plant and Human Odor Backgrounds. Journal of Chemical Ecology, 47(8-9), 810-818. https://doi.org/10.1007/s10886-021-01299-2

Barré, K., Kerbiriou, C., Ing, R. K., Bas, Y., Azam, C., Le Viol, I., & Spoelstra, K. (2021). Bats seek refuge in cluttered environment when exposed to white and red lights at night. Movement Ecology, 9(1), [3]. https://doi.org/10.1186/s40462-020-00238-2

Bradford, M. A., Maynard, D. S., Crowther, T. W., Frankson, P. T., Mohan, J. E., Steinrueck, C., Veen, G. F., King, J. R., & Warren, R. J. (2021). Belowground community turnover accelerates the decomposition of standing dead wood. Ecology, 102(11), [e03484]. https://doi.org/10.1002/ecy.3484

Moretti de Souza, L., Crusciol, C. A. C., Bossolani, J. W., Calonego, J. C., Moreira, A., Garcia, A., Momesso, L., Kuramae, E., & Hungria, M. (2021). Beneficial microbial species and metabolites alleviate soybean oxidative damage and increase grain yield during short dry spells. European Journal of Agronomy, 127, [126293]. https://doi.org/10.1016/j.eja.2021.126293

Friman, J., Pineda, A., van Loon, J. J. A., & Dicke, M. (2021). Bidirectional plant-mediated interactions between rhizobacteria and shoot-feeding herbivorous insects: a community ecology perspective. Ecological Entomology, 46(1), 1-10. https://doi.org/10.1111/een.12966

Schippers, P., Abarca, E. L., Verboom, J., Wamelink, G. W. W., Vos, C. C., de Boer, W. F., Harvey, J. A., Essens, T., Grashof-Bokdam, C. J., WallisDeVries, M. F., & Cobben, M. M. P. (2021). Biodiversity conservation in climate change driven transient communities. Biodiversity and Conservation. https://doi.org/10.1007/s10531-021-02241-4

Clocchiatti, A. (2021). Bringing soil fungi into action: Options for forward-looking agriculture (PhD Thesis). Wageningen University. https://doi.org/10.18174/537032

Zhang, Y., Jones, M., Zhang, J., McGowan, S., & Metcalfe, S. (2021). Can δ18O help indicate the causes of recent lake area expansion on the western Tibetan Plateau? A case study from Aweng Co. Journal of Paleolimnology, 65(1), 169-180. https://doi.org/10.1007/s10933-020-00158-6

Taparia, T., Hendrix, E., Hendriks, M., Nijhuis, E., de Boer, W., & van der Wolf, J. (2021). Casing soil microbiome mediates suppression of bacterial blotch of mushrooms during consecutive cultivation cycles. Soil Biology and Biochemistry, 155, [108161]. https://doi.org/10.1016/j.soilbio.2021.108161

Frenken, T., Paseka, R., González, A., Asik, L., Seabloom, E. W., White, L., Borer, E. T., Strauss, A. T., Peace, A., & van de Waal, D. B. (2021). Changing elemental cycles, stoichiometric mismatches, and consequences for pathogens of primary producers. Oikos, 130(7), 1046-1055. https://doi.org/10.1111/oik.08253

Janssen, A. B. G., Droppers, B., Kong, X., Teurlincx, S., Tong, Y., & Kroeze, C. (2021). Characterizing 19 Thousand Chinese Lakes, Ponds and Reservoirs by Morphometric, Climate and Sediment Characteristics. Water Research, 202, [117427]. https://doi.org/10.1016/j.watres.2021.117427

Duxbury, S. J. N., Alderliesten, J. B., Zwart, M. P., Stegeman, A., Fischer, E. A. J., & de Visser, J. A. G. M. (2021). Chicken gut microbiome members limit the spread of an antimicrobial resistance plasmid in Escherichia coli. Proceedings of the Royal Society B: Biological Sciences, 288(1962), [20212027]. https://doi.org/10.1098/rspb.2021.2027

Andreo-Jimenez, B., Schilder, M. T., Nijhuis, E. H., Te Beest, D. E., Bloem, J., Visser, J. H. M., van Os, G., Brolsma, K., de Boer, W., & Postma, J. (2021). Chitin- and Keratin-Rich Soil Amendments Suppress Rhizoctonia solani Disease via Changes to the Soil Microbial Community. Applied and Environmental Microbiology, 87(11). https://doi.org/10.1128/AEM.00318-21

Nurfikari, A., & de Boer, W. (2021). Chitin Determination in Residual Streams Derived from Insect Production by LC-ECD and LC-MS/MS methods. Frontiers In Sustainable Food Systems, 5, [795694]. https://doi.org/10.3389/fsufs.2021.795694

Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J-M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C.,... Drezen, J-M. (2021). Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology, 4(1), 104. https://doi.org/10.1038/s42003-020-01623-8

Eichhorn, G., Boom, M. P., van der Jeugd, H. P., Mulder, A., Wikelski, M., Maloney, S. K., & Goh, G. H. (2021). Circadian and Seasonal Patterns of Body Temperature in Arctic Migratory and Temperate Non-migratory Geese. Frontiers in Ecology and Evolution, 9, 425. https://doi.org/10.3389/fevo.2021.699917

Taparia, T., Hendrix, E., Nijhuis, E., de Boer, W., & van der Wolf, J. (2021). Circular alternatives to peat in growing media: A microbiome perspective. Journal of Cleaner Production, 327, [129375]. https://doi.org/10.1016/j.jclepro.2021.129375

Zhang, Y., Zhang, J., McGowan, S., Metcalfe, S., Jones, M., Leng, M. J., & Hou, J. (2021). Climatic and environmental change in the western Tibetan Plateau during the Holocene, recorded by lake sediments from Aweng Co. Quaternary Science Reviews, 259. https://doi.org/10.1016/j.quascirev.2021.106889

de Bruijn, D. S., ter Braak, P. M., Van de Waal, D. B., Olthuis, W., & van den Berg, A. (2021). Coccolithophore calcification studied by single-cell impedance cytometry: Towards single-cell PIC:POC measurements. Biosensors and Bioelectronics, 173, [112808]. https://doi.org/10.1016/j.bios.2020.112808

Verstijnen, Y. J. M., Maliaka, V., Catsadorakis, G., Lürling, M., & Smolders, A. J. P. (2021). Colonial nesting waterbirds as vectors of nutrients to Lake Lesser Prespa (Greece). Inland Waters, 11(2), 191-207. https://doi.org/10.1080/20442041.2020.1869491

van Dis, N. E., Spoelstra, K., Visser, M. E., & Dominoni, D. M. (2021). Color of Artificial Light at Night Affects Incubation Behavior in the Great Tit, Parus major. Frontiers in Ecology and Evolution, 9, [728377]. https://doi.org/10.3389/fevo.2021.728377

Chaves, M. G., Venturini, A. M., Merlotti, L. F., Barros, D. J., Rossetto, R., Kuramae, E., Tsai, S. M., & Navarrete, A. A. (2021). Combined use of vinasse and nitrogen as fertilizers affects nitrification, ammonification and denitrification by prokaryotes. Frontiers in Soil Science, 1, [746745]. https://doi.org/10.3389/fsoil.2021.746745

Taparia, T., Hendrix, E., Hendriks, M., Krijger, M., De Boer, W., & Van der Wolf, J. (2021). Comparative studies on the disease prevalence and population dynamics of ginger blotch and brown blotch pathogens of button mushrooms. Plant Disease, 105(3), 542-547. https://doi.org/10.1094/PDIS-06-20-1260-RE

Westhoff, S., Kloosterman, A. M., van Hoesel, S. F. A., van Wezel, G. P., & Rozen, D. E. (2021). Competition sensing changes antibiotic production in streptomyces. mBio, 12(1), 1-13. [e02729-20]. https://doi.org/10.1128/mBio.02729-20

Costa, O. Y. A., Meima-Franke, M., & Bodelier, P. (2021). Complete and Draft Genome Sequences of Aerobic Methanotrophs Isolated from a Riparian Wetland. Microbiology Resource Announcements, 10(9), [e01438-20]. https://doi.org/10.1128/MRA.01438-20

Frauendorf, M., Allen, A. M., Verhulst, S., Jongejans, E., Ens, B. J., van der Kolk, H. J., de Kroon, H., Nienhuis, J., & van de Pol, M. (2021). Conceptualizing and quantifying body condition using structural equation modelling: A user guide. Journal of Animal Ecology, 90(11), 2478-2496. https://doi.org/10.1111/1365-2656.13578

Bakker, W., Ens, B. J., Dokter, A., van der Kolk, H. J., Rappoldt, K., van de Pol, M., Troost, K., van der Veer, H. W., Bijleveld, A. I., van der Meer, J., Oosterbeek, K., Jongejans, E., & Allen, A. M. (2021). Connecting foraging and roosting areas reveals how food stocks explain shorebird numbers. Estuarine, Coastal and Shelf Science, 259, [107458]. https://doi.org/10.1016/j.ecss.2021.107458

Culina, A., Adriaensen, F., Bailey, L. D., Burgess, M. D., Charmantier, A., Cole, E. F., Eeva, T., Matthysen, E., Nater, C. R., Sheldon, B. C., Sæther, B. E., Vriend, S. J. G., Zajkova, Z., Adamík, P., Aplin, L. M., Angulo, E., Artemyev, A., Barba, E., Barišić, S.,... Visser, M. E. (2021). Connecting the data landscape of long-term ecological studies: The SPI-Birds data hub. Journal of Animal Ecology, 90(9), 2147-2160. https://doi.org/10.1111/1365-2656.13388

Salmón, P., Jacobs, A., Ahrén, D., Biard, C., Dingemanse, N. J., Dominoni, D. M., Helm, B., Lundberg, M., Senar, J. C., Sprau, P., Visser, M. E., & Isaksson, C. (2021). Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe. Nature Communications, 12, [2983]. https://doi.org/10.1038/s41467-021-23027-w

van de Pol, M., & Brouwer, L. (2021). Cross-lags and the unbiased estimation of life-history and demographic parameters. Journal of Animal Ecology, 90(10), 2234-2253. https://doi.org/10.1111/1365-2656.13572

Reinl, K. L., Brookes, J. D., Carey, C. C., Harris, T. D., Ibelings, B., Morales-Williams, A. M., de Senerpont Domis, L., Atkins, K. S., Isles, P. D. F., Mesman, J. P., North, R. L., Rudstam, L. G., Stelzer, J. A. A., Venkiteswaran, J. J., Yokota, K., & Zhan, Q. (2021). Cyanobacterial blooms in oligotrophic lakes: Shifting the high-nutrient paradigm. Freshwater Biology, 66(9), 1846-1859. https://doi.org/10.1111/fwb.13791

Habtemariam, H., Kifle, D., Leta, S., Beekman, W., & Lürling, M. (2021). Cyanotoxins in drinking water supply reservoir (Legedadi, Central Ethiopia): implications for public health safety. SN Applied Sciences, 3(3), [328]. https://doi.org/10.1007/s42452-021-04313-0

Liu, X., Hannula, S. E., Li, X., Hundscheid, M. P. J., Gunnewiek, P. J. A. K., Clocchiatti, A., Ding, W., & Boer, W. D. (2021). Decomposing cover crops modify root-associated microbiome composition and disease tolerance of cash crop seedlings. Soil Biology and Biochemistry, 160, [108343]. https://doi.org/10.1016/j.soilbio.2021.108343

Zardi, G. I., Nicastro, K. R., McQuaid, C. D., de Jager, M., Van de Koppel, J., & Seuront, L. (2021). Density-Dependent and Species-Specific Effects on Self-Organization Modulate the Resistance of Mussel Bed Ecosystems to Hydrodynamic Stress. American Naturalist, 197(5), 615-623. https://doi.org/10.1086/713738

Song, C., Jin, K., & Raaijmakers, J. M. (2021). Designing a home for beneficial plant microbiomes. Current Opinion in Plant Biology, 62, [102025]. https://doi.org/10.1016/j.pbi.2021.102025

Hu, W., Wei, W., Ye, C., Li, C., Zheng, Y., Shi, X., Chang, M., & Chen, H. (2021). Determining the optimal biomass of macrophytes during the ecological restoration process of eutrophic shallow lakes. Water (Switzerland), 13(21), [3142]. https://doi.org/10.3390/w13213142

Fei, M., Hu, H., Gols, R., Liu, S., Wan, X., Li, B., & Harvey, J. A. (2021). Development and oviposition strategies in two congeneric gregarious larval-pupal endoparasitoids of the seven-spot ladybird, Coccinella septempunctata. Biological Control, 163, [104756]. https://doi.org/10.1016/j.biocontrol.2021.104756

Magioli, M., Villar, N., Jorge, M. L., Biondo, C., Keuroghlian, A., Bradham, J., Pedrosa, F., Costa, V., Moreira, M. Z., Ferraz, K. M. P. M. D. B., & Galetti, M. (2021). Dietary expansion facilitates the persistence of a large frugivore in fragmented tropical forests. Animal Conservation, In press. https://doi.org/10.1111/acv.12766

Friman, J., Pineda, A., Gershenzon, J., Dicke, M., & van Loon, J. J. A. (2021). Differential effects of the rhizobacterium Pseudomonas simiae on above- and belowground chewing insect herbivores. Journal of Applied Entomology, 145(3), 250-260. https://doi.org/10.1111/jen.12842

Kirchner, N., Cano-Prieto, C., Schulz-Finke, A., Gütschow, M., Ortlieb, N., Moschny, J., Niedermeyer, T., Horak, J., Lämmerhofer, M., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2021). Discovery of Thanafactin A, a Linear Proline-containing Octa-Lipopeptide from Pseudomonas sp. SH-C52, Motivated by Genome Mining. Journal of Natural Products, 84(1), 101–109. https://doi.org/10.1021/acs.jnatprod.0c01174

van Dijk, H., Kaupper, T., Bothe, C., Lee, H. J., Bodelier, P., Horn, M. A., & Ho, A. (2021). Discrepancy in exchangeable and soluble ammonium-induced effects on aerobic methane oxidation: a microcosm study of a paddy soil. Biology and Fertility of Soils, 57, 873–880. https://doi.org/10.1007/s00374-021-01579-9

Koorem, K., Wilschut, R., Weser, C., & van der Putten, W. H. (2021). Disentangling nematode and arbuscular mycorrhizal fungal community effect on the growth of range-expanding Centaurea stoebe in original and new range soil. Plant and Soil, in press. https://doi.org/10.1007/s11104-021-05020-w

Ossowicki, A., Raaijmakers, J. M., & Garbeva, P. (2021). Disentangling soil microbiome functions by perturbation. Environmental Microbiology Reports, 13(5), 582-590. https://doi.org/10.1111/1758-2229.12989

Tracanna, V., Ossowicki, A., Petrus, M. L. C., Overduin, S., Terlouw, B. R., Lund, G., Robinson, S. L., Warris, S., Schijlen, E. G. W. M., van Wezel, G. P., Raaijmakers, J. M., Garbeva, P., & Medema, M. H. (2021). Dissecting disease-suppressive rhizosphere microbiomes by functional amplicon sequencing and 10X metagenomics. mSystems, 6(3), [e01116-20]. https://doi.org/10.1128/mSystems.01116-20

Musters, C. J. M., Evans, T. R., Wiggers, J. M. R., 't-Zelfde, M. V., & Snoo, G. R. D. (2021). Distribution of flying insects across landscapes with intensive agriculture in temperate areas. Ecological Indicators, 129, [107889]. https://doi.org/10.1016/j.ecolind.2021.107889

Kornijów, R., Dukowska, M., Leszczyńska, J., Smith, C., Jeppesen, E., Hansson, L. A., Ketola, M., Irvine, K., Nõges, T., Sahuquillo, M., Miracle, M. R., Gross, E., Kairesalo, T., van Donk, E., de Eyto, E., García-Criado, F., Grzybkowska, M., & Moss, B. (2021). Distribution patterns of epiphytic reed-associated macroinvertebrate communities across European shallow lakes. Science of the Total Environment, 760, [144117]. https://doi.org/10.1016/j.scitotenv.2020.144117

Laine, V. N., Verschuuren, M., van Oers, K., Espín, S., Sánchez-Virosta, P., Eeva, T., & Ruuskanen, S. (2021). Does Arsenic Contamination Affect DNA Methylation Patterns in a Wild Bird Population? An Experimental Approach. Environmental Science and Technology, 55(13), 8947-8954. https://doi.org/10.1021/acs.est.0c08621

Sun, R. L., Jing, Y. L., de Boer, W., Guo, R-J., & Li, S. D. (2021). Dominant hyphae-associated bacteria of Fusarium oxysporum f. sp. cucumerinum in different cropping systems and insight into their functions. Applied Soil Ecology, 165, [103977]. https://doi.org/10.1016/j.apsoil.2021.103977

Cvetkoska, A., Jovanovska, E., Hauffe, T., Donders, T. H., Levkov, Z., Waal, D. B. V. D., Reed, J. M., Francke, A., Vogel, H., Wilke, T., Wagner, B., & Wagner-Cremer, F. (2021). Drivers of phytoplankton community structure change with ecosystem ontogeny during the Quaternary. Quaternary Science Reviews, 265, [107046]. https://doi.org/10.1016/j.quascirev.2021.107046

Bennike, O., Odgaard, B. V., Moorhouse, H., McGowan, S., Siggaard-Andersen, M-L., Turner, B., Schomacker, A., Jessen, S., Kazmierczak, J., Olsen, J., Rasmussen, P., Kidmose, J., Nisbeth, C. S., Thorling, L., & Weckström, K. (2021). Early historical forest clearance caused major degradation of water quality at Lake Væng, Denmark. Anthropocene, 35, [100302]. https://doi.org/10.1016/j.ancene.2021.100302

Momesso, L., Crusciol, C. A. C., Soratto, R. P., Nascimento, C. A. C., Rosolem, C. A., Moretti de Souza, L., Kuramae, E., & Cantarella, H. (2021). Early nitrogen supply as an alternative management for a cover crop-maize sequence under a no-till system. Nutrient Cycling in Agroecosystems. https://doi.org/10.1007/s10705-021-10158-1

Duan, Z., Tan, X., Paerl, H. W., & van de Waal, D. B. (2021). Ecological stoichiometry of functional traits in a colonial harmful cyanobacterium. Limnology and Oceanography, 66(5). https://doi.org/10.1002/lno.11744

Ochoa-Hueso, R., Delgado-Baquerizo, M., Risch, A. C., Schrama, M., Morriën, E., Barmentlo, S. H., Geisen, S., Hannula, S. E., Resch, M. C., Snoek, B. L., & van der Putten, W. H. (2021). Ecosystem coupling: A unifying framework to understand the functioning and recovery of ecosystems. One Earth, 4(7), 951-966. https://doi.org/10.1016/j.oneear.2021.06.011

Zhan, Q., Stratmann, C. N., van der Geest, H. G., Veraart, A. J., Brenzinger, K., Lürling, M., & de Senerpont Domis, L. N. (2021). Effectiveness of phosphorus control under extreme heatwaves: implications for sediment nutrient releases and greenhouse gas emissions. Biogeochemistry, 156, 421-436. https://doi.org/10.1007/s10533-021-00854-z

Schelfhout, S., Wasof, S., Mertens, J., Vanhellemont, M., Demey, A., Haegeman, A., DeCock, E., Moeneclaey, I., Vangansbeke, P., Viaene, N., Baeyen, S., De Sutter, N., Maes, M., van der Putten, W. H., Verheyen, K., & De Schrijver, A. (2021). Effects of bioavailable phosphorus and soil biota on typical Nardus grassland species in competition with fast-growing plant species. Ecological Indicators, 120, [106880]. https://doi.org/10.1016/j.ecolind.2020.106880

Chen, X., McGowan, S., Qin, B., Huang, X., Stevenson, M. A., Zhang, Z., Zeng, L., & Bai, X. (2021). Effects of climate change on a subtropical montane peatland over the last two centuries: Evidence from diatom records. Holocene, 31(7), 1112-1123. https://doi.org/10.1177/09596836211003220

Yang, Q., Siemann, E., Harvey, J. A., Ding, J., & Biere, A. (2021). Effects of soil biota on growth, resistance and tolerance to herbivory in Triadica sebifera plants. Geoderma, 402, [115191]. https://doi.org/10.1016/j.geoderma.2021.115191

Jeon, J-S., Etalo, D. W., Carreno-Quintero, N., de Vos, R. C. H., & Raaijmakers, J. M. (2021). Effects of Sulfur Assimilation in Pseudomonas fluorescens SS101 on Growth, Defense, and Metabolome of Different Brassicaceae. Biomolecules, 11(11). https://doi.org/10.3390/biom11111704

Borer, E. T., Asik, L., Everett, R. A., Frenken, T., Gonzalez, A. L., Paseka, R. E., Peace, A., Seabloom, E. W., Strauss, A. T., van de Waal, D. B., & White, L. A. (2021). Elements of disease in a changing world: modelling feedbacks between infectious disease and ecosystems. Ecology Letters, 24(1). https://doi.org/10.1111/ele.13617

van Leeuwen, C. H. A., Temmink, R. J. M., Jin, H., Kahlert, Y., Robroek, B. J. M., Berg, M. P., Lamers, L. P. M., van den Akker, M., Posthoorn, R., Boosten, A., Olff, H., & Bakker, E. S. (2021). Enhancing ecological integrity while preserving ecosystem services: constructing soft-sediment islands in a shallow lake. Ecological Solutions and Evidence, 2(3). https://doi.org/10.1002/2688-8319.12098

Sepers, B., Erven, J. A., Gawehns - Bruning, F. K. K., Laine, V., & van Oers, K. (2021). Epigenetics and Early Life Stress: Experimental Brood Size Affects DNA Methylation in Great Tits (Parus major). Frontiers in Ecology and Evolution, 9, [609061]. https://doi.org/10.3389/fevo.2021.609061

Resch, M. C., Schütz, M., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., & Risch, A. C. (2021). Evaluating long-term success in grassland restoration: an ecosystem multifunctionality approach. Ecological Applications, 31(3), [e02271]. https://doi.org/10.1002/eap.2271

Clocchiatti, A., Hannula, E., Van den Berg, M., Hundscheid, M. P. J., & de Boer, W. (2021). Evaluation of phenolic root exudates as stimulants of saprotrophic fungi in the rhizosphere. Frontiers in Microbiology, 12, [644046]. https://doi.org/10.3389/fmicb.2021.644046

Sorrel, P., Jacq, K., Van Exem, A., Escarguel, G., Dietre, B., Debret, M., McGowan, S., Ducept, J., Gauthier, E., & Oberhänsli, H. (2021). Evidence for centennial-scale Mid-Holocene episodes of hypolimnetic anoxia in a high-altitude lake system from central Tian Shan (Kyrgyzstan). Quaternary Science Reviews, 252, [106748]. https://doi.org/10.1016/j.quascirev.2020.106748

Zhang, J., Vrieling, K., Klinkhamer, P. G. L., & Bezemer, T. M. (2021). Exogenous application of plant defense hormones alters the effects of live soils on plant performance. Basic and Applied Ecology, 56, 144-155. https://doi.org/10.1016/j.baae.2021.07.011

Barmentlo, S. H., Schrama, M., De Snoo, G. R., Van Bodegom, P. M., van Nieuwenhuijzen, A., & Vijver, M. G. (2021). Experimental evidence for neonicotinoid driven decline in aquatic emerging insects. Proceedings of the National Academy of Sciences of the United States of America, 118(44), [e2105692118]. https://doi.org/10.1073/pnas.2105692118

Hawkes, C. V., Kjøller, R., Raaijmakers, J. M., Riber, L., Christensen, S., Bjorholm Dahl, A., Cairo Westergaard, J., Nielsen, M., Brown-Guedira, G., & Hestbjerg Hansen, L. (2021). Extension of Plant Phenotypes by the Foliar Microbiome. Annual Review of Plant Biology, 72, 823-846. https://doi.org/10.1146/annurev-arplant-080620-114342

Oyserman, B. O., Cordovez, V., Sarango Flores, S. W., Nijveen, H., Medema, M. H., & Raaijmakers, J. M. (2021). Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes. Frontiers in Microbiology, 11, [574053]. https://doi.org/10.1101/863399, https://doi.org/10.3389/fmicb.2020.574053

Zhou, X., Leite, M. F. A., Zhang, Z., Tian, L., Chang, J., Ma, L., Li, X., van Veen, H., Tian, C., & Kuramae, E. (2021). Facilitation in the soil microbiome does not necessarily lead to niche expansion. Environmental Microbiome, 16, [4]. https://doi.org/10.1186/s40793-021-00373-2

Salvador, R. B., Rogers, K. M., Tennyson, A. J. D., & Tomotani, B. M. (2021). Feeding ecology analysis supports a marine diet in the extinct Chatham Island Duck (Anas chathamica). Emu, 121(4). https://doi.org/10.1080/01584197.2021.1939719

Sanjuán, R., Illingworth, C. J. R., Geoghegan, J. L., Iranzo, J., Zwart, M., Ciota, A. T., Moratorio, G., Gago-Zachert, S., Duffy, S., & Vijaykrishna, D. (2021). Five Challenges in the Field of Viral Diversity and Evolution. Frontiers in Virology, 1, 1-5. [684949]. https://doi.org/10.3389/fviro.2021.684949

Armstrong, M. R., Kramer, L., de Senerpont Domis, L., van Wijk, D., Gsell, A., Mooij, W. M., & Teurlincx, S. (2021). Flipping Lakes: Explaining concepts of catchment-scale water management through a serious game. Limnology and Oceanography: Methods, 19(7), 443-456. https://doi.org/10.1002/lom3.10436

Arruda, R. S., Noyma, N. P., de Magalhães, L., Mesquita, M. C. B., de Almeida, É. C., Pinto, E., Lürling, M., & Marinho, M. M. (2021). ‘Floc and Sink’ Technique Removes Cyanobacteria and Microcystins from Tropical Reservoir Water. Toxins, 13(6), [405]. https://doi.org/10.3390/toxins13060405

Mei, Z., de Groot, G. A., Kleijn, D., Dimmers, W., van Gils, S., Lammertsma, D., van Kats, R., & Scheper, J. (2021). Flower availability drives effects of wildflower strips on ground-dwelling natural enemies and crop yield. Agriculture, Ecosystems and Environment, 319, [107570]. https://doi.org/10.1016/j.agee.2021.107570

Villar, N., Paz, C., Zipparro, V., Nazareth, S., Bulascoschi, L., Bakker, E. S., & Galetti, M. (2021). Frugivory underpins the nitrogen cycle. Functional Ecology, 35(2), 357-368. https://doi.org/10.1111/1365-2435.13707

Patyshakuliyeva, A. (2021). Fungal proteases: Current and potential industrial applications. In Encyclopedia of Mycology (pp. 348-357). Elsevier Limited. https://doi.org/10.1016/B978-0-12-819990-9.00025-1

Geisen, S., ten Hooven, F. C., Kostenko, O., Snoek, L. B., & van der Putten, W. H. (2021). Fungal root endophytes influence plants in a species-specific manner that depends on plant's growth stage. Journal of Ecology, 109(4), 1618-1632. https://doi.org/10.1111/1365-2745.13584

Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M.,... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, [100116]. https://doi.org/10.1016/j.simyco.2021.100116

Entrambasaguas, L., Ruocco, M., Verhoeven, K. J. F., Procaccini, G., & Marín-Guirao, L. (2021). Gene body DNA methylation in seagrasses: inter- and intraspecific differences and interaction with transcriptome plasticity under heat stress. Scientific Reports, 11(1), [14343]. https://doi.org/10.1038/s41598-021-93606-w

McDaniel, E. A., Wever, R., Oyserman, B. O., Noguera, D. R., & McMahon, K. D. (2021). Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal. Microbiology Resource Announcements, 10(18), [e00244-21]. https://doi.org/10.1128/MRA.00244-21

Phillips, H. R. P., Bach, E. M., Bartz, M. L. C., Bennett, J. M., Beugnon, R., Briones, M. J. I., Brown, G. G., Ferlian, O., Gongalsky, K. B., Guerra, C. A., König-Ries, B., Krebs, J. J., Orgiazzi, A., Ramirez, K. S., Russell, D. J., Schwarz, B., Wall, D. H., Brose, U., Decaëns, T.,... Eisenhauer, N. (2021). Global data on earthworm abundance, biomass, diversity and corresponding environmental properties. Scientific data, 8(1), [136]. https://doi.org/10.1038/s41597-021-00912-z

Reinhart, K. O., Bauer, J. T., McCarthy-Neumann, S., MacDougall, A. S., Hierro, J. L., Chiuffo, M. C., Mangan, S. A., Heinze, J., Bergmann, J., Joshi, J., Duncan, R. P., Diez, J. M., Kardol, P., Rutten, G., Fischer, M., van der Putten, W. H., Bezemer, T. M., & Klironomos, J. (2021). Globally, plant-soil feedbacks are weak predictors of plant abundance. Ecology and Evolution, 11(4), 1756-1768. https://doi.org/10.1002/ece3.7167

Lürling, M. (2021). Grazing resistance in phytoplankton. Hydrobiologia, 848(1), 237-249. https://doi.org/10.1007/s10750-020-04370-3

Tomotani, B. M., Muijres, F. T., Johnston, B., van der Jeugd, H. P., & Naguib, M. (2021). Great tits do not compensate over time for a radio-tag-induced reduction in escape-flight performance. Ecology and Evolution, 11(23), 16600-16617. https://doi.org/10.1002/ece3.8240

Salgado, J., Sayer, C. D., Willby, N., Baker, A. G., Goldsmith, B., McGowan, S., Davidson, T. A., Bexell, P., Patmore, I. R., & Okamura, B. (2021). Habitat heterogeneity enables spatial and temporal coexistence of native and invasive macrophytes in shallow lake landscapes. River Research and Applications, In press. https://doi.org/10.1002/rra.3839

van de Waal, D. B., Bach, L., Berdalet, E., Brandenburg, K. M., Suikkanen, S., Wohlrab, S., Hansen, P. J., & Kremp, A. (2021). HABs under global change: Experimental conditions and approaches. In Guidelines for the Study of Climate Change Effects on HABs (pp. 36-63). (IOC Manuals and Guides; Vol. 88). UNESCO/SCOR. https://doi.org/10.25607/OBP-1692

Kattel, G., Reeves, J., Western, A., Zhang, W., Jing, W., McGowan, S., Cuo, L., Scales, P., Dowling, K., He, Q., Wang, L., Capon, S., Pan, Z., Cui, J., Zhang, L., Xiao, L., Liu, C., Zhang, K., Gao, C.,... Liu, Y. (2021). Healthy waterways and ecologically sustainable cities in Beijing-Tianjin-Hebei urban agglomeration (northern China): Challenges and future directions. Wiley Interdisciplinary Reviews: Water, 8(2), [e1500]. https://doi.org/10.1002/wat2.1500

van Bemmelen, R. S. A., Schekkerman, H., Hin, V., Pot, M. T., Janssen, K., Ganter, B., Rösner, H. U., & Tulp, I. (2021). Heavy decline of the largest European Arctic Skua Stercorarius parasiticus colony: interacting effects of food shortage and predation. Bird Study, 68(1), 100-111. https://doi.org/10.1080/00063657.2021.1969334

Mouchet, A., Cole, E. F., Matthysen, E., Nicolaus, M., Quinn, J. L., Roth, A. M., Tinbergen, J. M., van Oers, K., van Overveld, T., & Dingemanse, N. J. (2021). Heterogeneous selection on exploration behavior within and among West European populations of a passerine bird. Proceedings of the National Academy of Sciences of the United States of America, 118(28), [e2024994118]. https://doi.org/10.1073/pnas.2024994118

Mccarthy, E., Mcdiarmid, C. S., Hurley, L. L., Rowe, M., & Griffith, S. C. (2021). Highly variable sperm morphology in the masked finch (Poephila personata) and other estrildid finches. Biological Journal of the Linnean Society, 133(4), 1099-1109. https://doi.org/10.1093/biolinnean/blab048

Zieritz, A., Chan, W. N., McGowan, S., & Gibbins, C. (2021). High rates of biodeposition and N-excretion indicate strong functional effects of mussels (Bivalvia: Unionida) in certain anthropogenic tropical freshwater habitats. Hydrobiologia, 848(12-13), 3153-3166. https://doi.org/10.1007/s10750-020-04464-y

Cockburn, A., Peñalba, J. V., Jaccoud, D., Kilian, A., Brouwer, L., Double, M. C., Margraf, N., Osmond, H. L., Kruuk, L. E. B., & van de Pol, M. (2021). HIPHOP: improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecular Ecology Resources, 21(6). https://doi.org/10.1111/1755-0998.13389

Klamt, A-M., Poulsen, S. P., Odgaard, B. V., Hübener, T., McGowan, S., Jensen, H. S., & Reitzel, K. (2021). Holocene lake phosphorus species and primary producers reflect catchment processes in a small, temperate lake. Ecological Monographs, 91(3), [e01455]. https://doi.org/10.1002/ecm.1455

Fanin, N., Lin, D., Freschet, G. T., Keiser, A. D., Augusto, L., Wardle, D. A., & Veen, G. F. (2021). Home-field advantage of litter decomposition: from the phyllosphere to the soil. New Phytologist, 231(4). https://doi.org/10.1111/nph.17475

De Long, J., Heinen, R., Jongen, R., Hannula, E., Huberty, M. D., Kielak, A. M., Steinauer, K., & Bezemer, T. M. (2021). How plant-soil feedbacks influence the next generation of plants. Ecological Research, 36(1), 32-44. https://doi.org/10.1111/1440-1703.12165

Clocchiatti, A., Hannula, S. E., Rizaludin, M. S., Hundscheid, M. P. J., klein Gunnewiek, P. J. A., Schilder, M. T., Postma, J., & de Boer, W. (2021). Impact of Cellulose-Rich Organic Soil Amendments on Growth Dynamics and Pathogenicity of Rhizoctonia solani. Microorganisms, 9(6), [1285]. https://doi.org/10.3390/microorganisms9061285

Jeon, J-S., Carreno-Quintero, N., van Eekelen, H. D. L. M., De Vos, R. C. H., Raaijmakers, J. M., & Etalo, D. W. (2021). Impact of root-associated strains of three Paraburkholderia species on primary and secondary metabolism of Brassica oleracea. Scientific Reports, 11, [2781]. https://doi.org/10.1038/s41598-021-82238-9

Pan, K., Moens, M., Marshall, L., Cieraad, E., de Snoo, G. R., & Biesmeijer, K. (2021). Importance of natural land cover for plant species’ conservation: A nationwide study in The Netherlands. PLoS One, 16(11), e0259255. https://doi.org/10.1371/journal.pone.0259255

Hannula, E., Di Lonardo, D. P., Christensen, B. T., Crotty, F. V., Elsen, A., Erp, P. J. V., Hansen, E. M., Rubæk, G. H., Tits, M., Tóth, Z., & Termorshuizen, A. J. (2021). Inconsistent effects of agricultural practices on soil fungal communities across twelve European long-term experiments. European Journal of Soil Science, 72(4), 1902-1923. [13090]. https://doi.org/10.1111/ejss.13090

Christensen, S., Hol, W. H. G., Kurm, V., & Vestergård, M. (2021). Increased likelihood of high nitrous oxide (N₂o) exchange in soils at reduced microbial diversity. Sustainability, 13(4), [1685]. https://doi.org/10.3390/su13041685

Ziar, H., Prudon, B., Lin, F-Y., Roeffen, B., Heijkoop, D., Stark, T., Teurlincx, S., de Senerpont Domis, L., Garcia Goma, E., Garro Extebarria, J., Narvaez Alavez, I., van Tilborg, D., van Laar, H., Santbergen, R., & Isabella, O. (2021). Innovative Floating Bifacial Photovoltaic Solutions for Inland Water Areas. Progress in Photovoltaics : Research and Applications, 29(7), 725-743. https://doi.org/10.1002/pip.3367

Hermsen, D., Van de Waal, D. B., Declerck, S. A. J., Verreth, J. A. J., & Verdegem, M. C. J. (2021). In situ fatty acid production supports shrimp yields in diets lacking fish oil and fishmeal. Aquaculture Nutrition, 27(2), 506-518. https://doi.org/10.1111/anu.13202

Tomotani, B. M., Gienapp, P., de la Hera, I., Terpstra, M., Pulido, F., & Visser, M. E. (2021). Integrating Causal and Evolutionary Analysis of Life-History Evolution: Arrival Date in a Long-Distant Migrant. Frontiers in Ecology and Evolution, 9, [630823]. https://doi.org/10.3389/fevo.2021.630823

Qu, L., Wang, M., & Biere, A. (2021). Interactive effects of Mycorrhizae, Soil Phosphorus and Light on Growth and Induction and Priming of Defense in Plantago lanceolata. Frontiers in Plant Science, 12, [647372]. https://doi.org/10.3389/fpls.2021.647372

Maliaka, V., Lürling, M., Fritz, C., Verstijnen, Y. J. M., Faassen, E. J., van Oosterhout, F., & Smolders, A. J. P. (2021). Interannual and Spatial Variability of Cyanotoxins in the Prespa Lake Area, Greece. Water, 13(3). https://doi.org/10.3390/w13030357

Chen, J., Feng, K., Hannula, S. E., Kuzyakov, Y., Li, Y., & Xu, H. (2021). Interkingdom plant-microbial ecological networks under selective and clear cutting of tropical rainforest. Forest Ecology and Management, 491, [119182]. https://doi.org/10.1016/j.foreco.2021.119182

Manzoni, S., Ding, Y., Warren, C., Banfield, C. C., Dippold, M. A., & Mason-Jones, K. (2021). Intracellular Storage Reduces Stoichiometric Imbalances in Soil Microbial Biomass – A Theoretical Exploration. Frontiers in Ecology and Evolution, 9, [714134]. https://doi.org/10.3389/fevo.2021.714134

Brandenburg, K. M., Krock, B., Klip, H. C. L., Sluijs, A., Garbeva, P., & Van de Waal, D. B. (2021). Intraspecific variation in multiple trait responses of Alexandrium ostenfeldii towards elevated pCO₂. Harmful Algae, 101, [101970]. https://doi.org/10.1016/j.hal.2020.101970

Thakur, M. P., Künne, T., Unsicker, S. B., Biere, A., Ferlian, O., Pruschitzki, U., Thouvenot, L., Türke, M., & Eisenhauer, N. (2021). Invasive earthworms reduce chemical defense and increase herbivory and pathogen infection in native trees. Journal of Ecology, 109(2), 763-775. https://doi.org/10.1111/1365-2745.13504

Wilden, B., Traunspurger, W., & Geisen, S. (2021). Inventory of the benthic eukaryotic diversity in the oldest European lake. Ecology and Evolution, 11(16), 11207-11215. https://doi.org/10.1002/ece3.7907

Salvador, R. B., Tomotani, B. M., O’Donnell, K. L., Cavallari, D. C., Tomotani, J. V., Salmon, R. A., & Kasper, J. (2021). Invertebrates in Science Communication: Confronting Scientists’ Practices and the Public’s Expectations. Frontiers in Environmental Science, 9, [606416]. https://doi.org/10.3389/fenvs.2021.606416

Chang, M. (2021). Know your limits: Modelling consumer-resource interactions to derive nutrient thresholds for a sustainable Anthropocene (PhD Thesis). Wageningen University. https://doi.org/10.18174/536795

Liang, J., Lupien, R. L., Xie, H., Vachula, R. S., Stevenson, M. A., Han, B-P., Lin, Q., He, Y., Wang, M., Liang, P., Huang, Y., McGowan, S., Hou, J., & Russell, J. M. (2021). Lake ecosystem on the Qinghai–Tibetan Plateau severely altered by climatic warming and human activity. Palaeogeography, Palaeoclimatology, Palaeoecology, 576, [110509]. https://doi.org/10.1016/j.palaeo.2021.110509

Villar, N., & Medici, E. P. (2021). Large wild herbivores slow down the rapid decline of plant diversity in a tropical forest biodiversity hotspot. Journal of Applied Ecology, 58(11), 2361-2370. https://doi.org/10.1111/1365-2664.14054

Wang, Z. (2021). Linking microbial inoculants and associated changes in the soil microbiome to plant-soil performance in degraded lands (PhD Thesis). https://doi.org/10.33540/980

Martínez-García, L. B., Korthals, G. W., Brussaard, L., Mainardi, G., & De Deyn, G. B. (2021). Litter quality drives nitrogen release, and agricultural management (organic vs. conventional) drives carbon loss during litter decomposition in agro-ecosystems. Soil Biology and Biochemistry, 153, [108115]. https://doi.org/10.1016/j.soilbio.2020.108115

Chen, X., McGowan, S., Peng, J., Zheng, T., Bai, X., & Zeng, L. (2021). Local and Regional Drivers of Environmental Changes in Two Subtropical Montane Ponds (Central China) Over the Last Two Centuries. Ecosystems, 24(3), 565-582. https://doi.org/10.1007/s10021-020-00535-2

de Castro, F., Adl, S. M., Allesina, S., Bardgett, R. D., Bolger, T., Dalzell, J. J., Emmerson, M., Fleming, T., Garlaschelli, D., Grilli, J., Hannula, S. E., de Vries, F., Lindo, Z., Maule, A. G., Öpik, M., Rillig, M. C., Veresoglou, S. D., Wall, D. H., & Caruso, T. (2021). Local stability properties of complex, species-rich soil food webs with functional block structure. Ecology and Evolution, 11(22), 16070-16081. https://doi.org/10.1002/ece3.8278

Chen, Q., Bakker, J. P., Alberti, J., Bakker, E. S., Smit, C., & Olff, H. (2021). Long-term cross-scale comparison of grazing and mowing on plant diversity and community composition in a salt-marsh system. Journal of Ecology, 109(10). https://doi.org/10.1111/1365-2745.13753

Chen, B. J. W., Wang, X., Dong, Y., During, H. J., Xu, X., & Anten, N. P. R. (2021). Maternal environmental light conditions affect the morphological allometry and dispersal potential of acer palmatum samaras. Forests, 12(10), [1313]. https://doi.org/10.3390/f12101313

Govaert, L., De Meester, L., Rousseaux, S., Declerck, S. A. J., & Pantel, J. (2021). Measuring the contribution of evolution to community trait structure in freshwater zooplankton. Oikos, 130(10). https://doi.org/10.1111/oik.07885

De Bruijn, J. A. C., Vet, L. E. M., Smid, H. M., & De Boer, J. G. (2021). Memory extinction and spontaneous recovery shaping parasitoid foraging behavior. Behavioral Ecology, 32(5), 952-960. https://doi.org/10.1093/beheco/arab066

McDaniel, E. A., Moya-Flores, F., Beach, N. K., Camejo, P. Y., Oyserman, B. O., Kizaric, M., Khor, E. H., Noguera, D. R., & McMahon, K. D. (2021). Metabolic differentiation of co-occurring accumulibacter clades revealed through genome-resolved metatranscriptomics. mSystems, 6(4), [e00474-21]. https://doi.org/10.1128/mSystems.00474-21

Bahram, M., Netherway, T., Frioux, C., Ferretti, P., Coelho, L. P., Geisen, S., Bork, P., & Hildebrand, F. (2021). Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Environmental Microbiology, 23(1), 316-326. https://doi.org/10.1111/1462-2920.15314

Hasiów-Jaroszewska, B., Boezen, D., & Zwart, M. P. (2021). Metagenomic studies of viruses in weeds and wild plants: A powerful approach to characterise variable virus communities. Viruses, 13(10), [1939]. https://doi.org/10.3390/v13101939

Wang, Z., Xu, Z., Chen, Z., Kowalchuk, G. A., Fu, X., & Kuramae, E. (2021). Microbial inoculants modulate growth traits, nutrients acquisition and bioactive compounds accumulation of Cyclocarya paliurus. Forest Ecology and Management, 482. https://doi.org/10.1016/j.foreco.2020.118897

Weisskopf, L., Schulz, S., & Garbeva, P. (2021). Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions. Nature Reviews Microbiology, 19, 391–404. https://doi.org/10.1038/s41579-020-00508-1

Lameris, T., Hoekendijk, J., Aarts, G., Aarts, A., Allen, A. M., Bienfait, L., Bijleveld, A. I., Bongers, M. F., Brasseur, S., Chan, Y-C., de Ferrante, F., de Gelder, J., Derksen, H., Dijkgraaf, L., Dijkhuis, L. R., Dijkstra, S., Elbertsen, G., Ernsten, R., Foxen, T.,... van Langevelde, F. (2021). Migratory vertebrates shift migration timing and distributions in a warming Arctic. Animal Migration, 8(1), 110-131.

Lemmen, K. (2021). Mitigating elemental imbalance: Heritable & non-heritable adaptive responses to phosphorus limitation in an aquatic consumer (PhD Thesis). Utrecht University. https://doi.org/10.33540/707

Bossolani, J. W., Crusciol, C. A. C., Leite, M. F. A., Merloti, L. F., Moretti de Souza, L., Pascoaloto, I. M., & Kuramae, E. (2021). Modulation of the soil microbiome by long-term Ca-based soil amendments boosts soil organic carbon and physicochemical quality in a tropical no-till crop rotation system. Soil Biology & Biochemistry, 156, [108188]. https://doi.org/10.1016/j.soilbio.2021.108188

Cooke, A. C., Davidson, G. L., van Oers, K., & Quinn, J. L. (2021). Motivation, accuracy and positive feedback through experience explain innovative problem solving and its repeatability. Animal Behaviour, 174, 249-261. https://doi.org/10.1016/j.anbehav.2021.01.024

de Bruijn, J., Vosteen, I., Vet, L. E. M., Smid, H. M., & de Boer, J. G. (2021). Multi‐camera field monitoring reveals costs of learning for parasitoid foraging behaviour. Journal of Animal Ecology, 90(7), 1635-1646. https://doi.org/10.1111/1365-2656.13479

Caro, S. P., Pierre, L., Bergès, M., Bakker, R., Doutrelant, C., & Bonadonna, F. (2021). Mutual mate preferences and assortative mating in relation to a carotenoid-based color trait in blue tits. Behavioral Ecology, 32(6), 1171-1182. https://doi.org/10.1093/beheco/arab080

Kerstens, M., Hesen, V., Yalamanchili, K., Bimbo, A., Grigg, S., Opdenacker, D., Beeckman, T., Heidstra, R., & Willemsen, V. (2021). Nature and nurture: Genotype-dependent differential responses of root architecture to agar and soil environments. Genes, 12(7), [1028]. https://doi.org/10.3390/genes12071028

Temmink, R. J. M., van den Akker, M., Robroek, B. J. M., Cruijsen, P. M. J. M., Veraart, A. J., Kosten, S., Peters, R. C. J. H., Verheggen-Kleinheerenbrink, G. M., Roelofs, A. W., van Eek, X., Bakker, E. S., & Lamers, L. P. M. (2021). Nature development in degraded landscapes: How pioneer bioturbators and water level control soil subsidence, nutrient chemistry and greenhouse gas emission. Pedobiologia, 87-88, [150745]. https://doi.org/10.1016/j.pedobi.2021.150745

Schreven, K. H. T., Stolz, C., Madsen, J., & Nolet, B. A. (2021). Nesting attempts and success of Arctic-breeding geese can be derived with high precision from accelerometry and GPS-tracking. Animal Biotelemetry, 9, [25]. https://doi.org/10.1186/s40317-021-00249-9

Lameris, T., Dokter, A., van der Jeugd, H. P., Bouten, W., Koster, J., Sand, S. H. H., Westerduin, C., & Nolet, B. A. (2021). Nocturnal foraging lifts time constraints in winter for migratory geese but hardly speeds up fueling. Behavioral Ecology, 32(3), 539–552. [araa152]. https://doi.org/10.1093/beheco/araa152

Inderjit, Simberloff, D., Kaur, H., Kalisz, S., & Bezemer, T. M. (2021). Novel chemicals engender myriad invasion mechanisms. New Phytologist, 232(3), 1184-1200. https://doi.org/10.1111/nph.17685

Kuramae, E., Dimitrov, M., Silva, G. H. R., Lucheta, A., Mendes, L. W., Luz, R. L., Vet, L. E. M., & Fernandes, T. V. (2021). On-site blackwater treatment fosters microbial groups and functions to efficiently and robustly recover carbon and nutrients. Microorganisms, 9, [75]. https://doi.org/10.3390/microorganisms9010075

Vargas, P., Bosmans, L., Van Kerckhove, S., Van Calenberge, B., Raaijmakers, J. M., Lievens, B., & Rediers, H. (2021). Optimizing biocontrol activity of Paenibacillus xylanexedens for management of hairy root disease in tomato grown in hydroponic greenhouses. Agronomy Journal, 11(5), [817]. https://doi.org/10.3390/agronomy11050817

Momesso, L., Crusciol, C. A. C., Cantarella, H., Tanaka, K. S., Kowalchuk, G., & Kuramae, E. (2021). Optimizing cover crop and fertilizer timing for high maize yield and nitrogen cycle control. Geoderma, 405, [115423]. https://doi.org/10.1016/j.geoderma.2021.115423

Sterck, F., Vos, M., Hannula, S. E., de Goede, S., de Vries, W., den Ouden, J., Nabuurs, G-J., van der Putten, W., & Veen, C. (2021). Optimizing stand density for climate-smart forestry: a way forward towards resilient forests with enhanced carbon storage under extreme climate events. Soil Biology and Biochemistry, 162, [108396]. https://doi.org/10.1016/j.soilbio.2021.108396

Palmeros Parada, M., van der Putten, W., van der Wielen, L. A. M., Osseweijer, P., van Loosdrecht, M., Pashaei Kamali, F., & Posada, J. A. (2021). OSiD: opening the conceptual design of biobased processes to a context-sensitive sustainability analysis. Biofuels, Bioproducts and Biorefining, 15(4), 961-972. https://doi.org/10.1002/bbb.2216

Monchamp, M. -È., Bruel, R., Frossard, V., McGowan, S., Lavrieux, M., Muschick, M., Perga, M. -É., & Dubois, N. (2021). Paleoecological evidence for a multi-trophic regime shift in a perialpine lake (Lake Joux, Switzerland). Anthropocene, 35, [100301]. https://doi.org/10.1016/j.ancene.2021.100301

Hannula, E., Heinen, R., Huberty, M. D., Steinauer, K., De Long, J., Jongen, R., & Bezemer, T. M. (2021). Persistence of plant-mediated microbial soil legacy effects in soil and inside roots. Nature Communications, 12, [5686 ]. https://doi.org/10.1038/s41467-021-25971-z

Jongen, R., Hannula, E., De Long, J., Heinen, R., Huberty, M. D., Steinauer, K., & Bezemer, T. M. (2021). Plant community legacy effects on nutrient cycling, fungal decomposer communities and decomposition in a temperate grassland. Soil Biology & Biochemistry, 163, [108450]. https://doi.org/10.1016/j.soilbio.2021.108450

Francioli, D., van Rijssel, S. Q., van Ruijven, J., Termorshuizen, A. J., Cotton, T. E. A., Dumbrell, A. J., Raaijmakers, J. M., Weigelt, A., & Mommer, L. (2021). Plant functional group drives the community structure of saprophytic fungi in a grassland biodiversity experiment. Plant and Soil, 461, 91-105. https://doi.org/10.1007/s11104-020-04454-y

Cipriano, M., Freitas-Iório, R. D. P., Dimitrov, M., Andrade, S. A. L., Kuramae, E., & da Silveira, A. P. D. (2021). Plant-Growth Endophytic Bacteria Improve Nutrient Use Efficiency and Modulate Foliar N-Metabolites in Sugarcane Seedling. Microorganisms, 9(3), [479]. https://doi.org/10.3390/microorganisms9030479

Angulo, V., Beriot, N., Garcia-Hernandez, E., Li, E., Masteling, R., & Lau, J. (2021). Plant-Microbe Eco-Evolutionary Dynamics in a Changing World. New Phytologist, in press. https://doi.org/10.1111/nph.18015

Thakur, M. P., van der Putten, W. H., Wilschut, R. A., Veen, G. F., Kardol, P., van Ruijven, J., Allan, E., Roscher, C., van Kleunen, M., & Bezemer, T. M. (2021). Plant–Soil Feedbacks and Temporal Dynamics of Plant Diversity–Productivity Relationships. Trends in Ecology and Evolution, 36(7), 651-661. https://doi.org/10.1016/j.tree.2021.03.011

Wood, K., Stillman, R. A., Newth, J. L., Nuijten, R., Hilton, G. M., Nolet, B. A., & Rees, E. (2021). Predicting avian herbivore responses to changing food availability and competition. Ecological Modelling, 441, [109421]. https://doi.org/10.1016/j.ecolmodel.2020.109421

Stillman, R. A., Rivers, E. M., Gilkerson, W., Wood, K. A., Nolet, B. A., Clausen, P., Wilson, H. M., & Ward, D. H. (2021). Predicting impacts of food competition, climate and disturbance on a long-distance migratory herbivore. Ecosphere, 12(3), [e03405]. https://doi.org/10.1002/ecs2.3405

Colombelli-Négrel, D., Hauber, M. E., Evans, C., Katsis, A. C., Brouwer, L., Adreani, N. M., & Kleindorfer, S. (2021). Prenatal auditory learning in avian vocal learners and non-learners. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1836), [20200247]. https://doi.org/10.1098/rstb.2020.0247

Geisen, S., Hu, S., dela Cruz, T. E. E., & Veen, G. F. (2021). Protists as catalyzers of microbial litter breakdown and carbon cycling at different temperature regimes. ISME Journal, 15, 618–621. https://doi.org/10.1038/s41396-020-00792-y

Guo, S., Xiong, W., Hang, X., Gao, Z., Jiao, Z., Liu, H., Mo, Y., Zhang, N., Kowalchuk, G. A., Li, R., Shen, Q., & Geisen, S. (2021). Protists as main indicators and determinants of plant performance. Microbiome, 9(1), [64]. https://doi.org/10.1186/s40168-021-01025-w

Lindner, M., Laine, V., Verhagen, I. C., Viitaniemi, H., Visser, M. E., van Oers, K., & Husby, A. (2021). Rapid changes in DNA methylation associated with the initiation of reproduction in a small songbird. Molecular Ecology, 30(15), 3645-3659. https://doi.org/10.1111/mec.15803

Leite, M. F. A., Dimitrov, M., Iório, R. D. P. F. I., De Hollander, M., Cipriano, M., Andrade, S. A. L., da Silveira, A. P. D., & Kuramae, E. (2021). Rearranging the sugarcane holobiont via plant growth-promoting bacteria and nitrogen input. Science of the Total Environment, 800, [149493]. https://doi.org/10.1016/j.scitotenv.2021.149493

Visser, M. E., Lindner, M., Gienapp, P., Long, M. C., & Jenouvrier, S. (2021). Recent natural variability in global warming weakened phenological mismatch and selection on seasonal timing in great tits (Parus major). Proceedings of the Royal Society B: Biological Sciences, 288, [20211337]. https://doi.org/10.1098/rspb.2021.1337

Harvey, J. A. (2021). Reflections on the SARS-Covid-2 pandemic after one year: predictable, preventable but inevitable: an ecologist’s perspective. Central European Review of Economics and Management (CEREM), 5(1), 7-22. https://www.ceeol.com/search/article-detail?id=966454

Habtemariam, H., Kifle, D., Leta, S., Mucci, M., & Lürling, M. (2021). Removal of cyanobacteria from a water supply reservoir by sedimentation using flocculants and suspended solids as ballast: Case of Legedadi Reservoir (Ethiopia). PLoS One, 16(4), [e0249720]. https://doi.org/10.1371/journal.pone.0249720

Thakur, M. P., van der Putten, W. H., Apon, F., Angelini, E., Vreš, B., & Geisen, S. (2021). Resilience of rhizosphere microbial predators and their prey communities after an extreme heat event. Functional Ecology, 35(1), 216-225. https://doi.org/10.1111/1365-2435.13696

Kaminsky, R. A., Wakelin, S. A., Highton, M. P., Samad, M. S., & Morales, S. E. (2021). Resolving broad patterns of prokaryotic community structure in New Zealand pasture soils. New Zealand Journal of Agricultural Research, 64(2), 143-161. https://doi.org/10.1080/00288233.2019.1678491

Zhu, L., Huang, R., Zhou, L., Xi, Y., & Xiang, X. (2021). Responses of the ecological characteristics and antioxidant enzyme activities in Rotaria rotatoria to UV-B radiation. Hydrobiologia, 848, 4749–4761. https://doi.org/10.1007/s10750-021-04671-1

Jin, H. (2021). Restoring aquatic food webs bottom-up: Improving trophic transfer through lake restoration project Marker Wadden (PhD Thesis). Wageningen University. https://doi.org/10.18174/555439

Sun, Y., Tian, L., Chang, J., Shi, S., Zhang, J., Xie, H., Cai, Y., Chen, D., Kuramae, E., van Veen, J. A., Li, W., Tran, L-S. P., & Tian, C. (2021). Rice domestication influences the composition and function of the rhizosphere bacterial chemotaxis systems. Plant and Soil, 466. https://doi.org/10.1007/s11104-021-05036-2

van Rees, C. B., Waylen, K. A., Schmidt-Kloiber, A., Thackeray, S. J., Kalinkat, G., Martens, K., Domisch, S., Lillebø, A. I., Hermoso, V., Grossart, H. P., Schinegger, R., Decleer, K., Adriaens, T., Denys, L., Jarić, I., Janse, J. H., Monaghan, M. T., De Wever, A., Geijzendorffer, I.,... Jähnig, S. C. (2021). Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters, 14(1), [e12771]. https://doi.org/10.1111/conl.12771

Valdebenito, J. O., Halimubieke, N., Lendvai, Á. Z., Figuerola, J., Eichhorn, G., & Székely, T. (2021). Seasonal variation in sex-specific immunity in wild birds. Scientific Reports, 11, [1349]. https://doi.org/10.1038/s41598-020-80030-9

Datry, T., Allen, D., Argelich, R., Barquin, J., Bonada, N., Boulton, A., Branger, F., Cai, Y., Cañedo-Argüelles, M., Cid, N., Csabai, Z., Dallimer, M., de Araújo, J. C., Declerck, S., Dekker, T., Döll, P., Encalada, A., Forcellini, M., Foulquier, A.,... Vinyoles, D. (2021). Securing Biodiversity, Functional Integrity, and Ecosystem Services in Drying River Networks (DRYvER). RIO, 7, [e77750]. https://doi.org/10.3897/rio.7.e77750

Treep, J., de Jager, M., Bartumeus, F., & Soons, M. (2021). Seed dispersal as a search strategy: dynamic and fragmented landscapes select for multi-scale movement strategies in plants. Movement Ecology, 9, [4]. https://doi.org/10.1186/s40462-020-00239-1

Chang, J., Shi, S., Tian, L., Leite, M. F. A., Chang, C., Ji, L., Ma, L., Tian, C., & Kuramae, E. (2021). Self-crossing leads to weak co-variation of the bacterial and fungal communities in the rice rhizosphere. Microorganisms, 9(1). https://doi.org/10.3390/microorganisms9010175

Dassen, S., van der Putten, W. H., & De Deyn, G. B. (2021). Severance of arbuscular mycorrhizal fungal mycelial networks in restoration grasslands enhances seedling biomass. New Phytologist, 232(2), 753-761. https://doi.org/10.1111/nph.17636

Odom, K. J., Cain, K. E., Hall, M. L., Langmore, N. E., Mulder, R. A., Kleindorfer, S., Karubian, J., Brouwer, L., Enbody, E. D., Jones, J. A., Dowling, J. L., Leitão, A. V., Greig, E. I., Evans, C., Johnson, A. E., Meyers, K. K. A., Araya-Salas, M., & Webster, M. S. (2021). Sex role similarity and sexual selection predict male and female song elaboration and dimorphism in fairy-wrens. Ecology and Evolution, 11(24), 17901-17919. https://doi.org/10.1002/ece3.8378

Janssen, A. B. G., Hilt, S., Kosten, S., de Klein, J., Paerl, H. W., & van de Waal, D. B. (2021). Shifting states, shifting services: Linking regime shifts to changes in ecosystem services of shallow lakes. Freshwater Biology, 66(1), 1-12. https://doi.org/10.1111/fwb.13582

Meisner, A., Snoek, B., Nesme, J., Dent, E., Jacquiod, S., Classen, A. T., & Priemé, A. (2021). Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles. ISME Journal, 15, 1207-1221. https://doi.org/10.1038/s41396-020-00844-3

Grum-Grzhimaylo, A. A., Bastiaans, E., van den Heuvel, J., Berenguer Millanes, C., Debets, A. J. M., & Aanen, D. K. (2021). Somatic deficiency causes reproductive parasitism in a fungus. Nature Communications, 12, [783]. https://doi.org/10.1038/s41467-021-21050-5

Bossolani, J. W., dos Santos, F. L., Meneghette, H. H. A., Sanches, I. R., Moretti, L. G., Parra, L. F., & Lazarini, E. (2021). Soybean in Crop Rotation with Maize and Palisade Grass Intercropping Enhances the Long-term Effects of Surface Liming in No-till System. Journal of Soil Science and Plant Nutrition, 21(1), 119–130. https://doi.org/10.1007/s42729-020-00347-2

Musolff, A., Zhan, Q., Dupas, R., Minaudo, C., Fleckenstein, J. H., Rode, M., Dehaspe, J., & Rinke, K. (2021). Spatial and Temporal Variability in Concentration-Discharge Relationships at the Event Scale. Water Resources Research, 57(10), [e2020WR029442]. https://doi.org/10.1029/2020WR029442

Lesilau, F., Verschueren, S., van't Zelfde, M., Musters, K. C. J. M., De Snoo, G. R., & De Iongh, H. H. (2021). Spatial ecology of lions in a small, semi-fenced park surrounded by dense human populations: the case study of Nairobi National Park, Kenya. Mammalia, 85(3), 198-207. https://doi.org/10.1515/mammalia-2020-0116

Xiong, D., Wei, C., Wang, X., Lü, X., Fang, S., Li, Y., Wang, X., Liang, W., Han, X., Bezemer, T. M., & Li, Q. (2021). Spatial patterns and ecological drivers of soil nematode β-diversity in natural grasslands vary among vegetation types and trophic position. Journal of Animal Ecology, 90(5), 1367-1378. https://doi.org/10.1111/1365-2656.13461

Martín Vélez, V., van Leeuwen, C. H. A., Sanchez, M. I., Hortas, F., Shamoun-Baranes, J., Thaxter, C. B., Lens, L., Camphuysen, C. J., & Green, A. J. (2021). Spatial patterns of weed dispersal by wintering gulls within and beyond an agricultural landscape. Journal of Ecology, 109(4), 1947-1958. https://doi.org/10.1111/1365-2745.13619

Fischer, K., Kreyling, J., Beaulieu, M., Beil, I., Bog, M., Bonte, D., Holm, S., Knoblauch, S., Koch, D., Muffler, L., Mouginot, P., Paulinich, M., Scheepens, J. F., Schiemann, R., Schmeddes, J., Schnittler, M., Uhl, G., van der Maaten-Theunissen, M., Weier, J. M.,... Gienapp, P. (2021). Species-specific effects of thermal stress on the expression of genetic variation across a diverse group of plant and animal taxa under experimental conditions. Heredity, 126(1), 23–37. https://doi.org/10.1038/s41437-020-0338-4

McDiarmid, C. S., Li, R., Kahrl, A. F., Rowe, M., & Griffith, S. C. (2021). Sperm Sizer: a program to semi-automate the measurement of sperm length. Behavioral Ecology and Sociobiology, 75, [84]. https://doi.org/10.1007/s00265-021-03013-4

van Irsel, J., Frauendorf, M., Ens, B. J., van de Pol, M., Troost, K., Oosterbeek, K., de Kroon, H., Jongejans, E., & Allen, A. M. (2021). State-dependent environmental sensitivity of reproductive success and survival in a shorebird. Ibis, In press. https://doi.org/10.1111/ibi.13038

van der Kolk, H-J. (2021). Stay or fly away? Impact of human disturbance on shorebird individuals and populations (PhD Thesis). http://hdl.handle.net/2066/233869

Brenzinger, K., Costa, O. Y. A., Ho, A., Koorneef, G., Robroek, B. J. M., Molenaar, D., Korthals, G., & Bodelier, P. (2021). Steering microbiomes by organic amendments towards climate-smart agricultural soils. Biology and Fertility of Soils, 57, 1053–1074. https://doi.org/10.1007/s00374-021-01599-5

Veen, G. F., ten Hooven, F., Weser, C., & Hannula, E. (2021). Steering the soil microbiome by repeated litter addition. Journal of Ecology, 109(6), 2499-2513. https://doi.org/10.1111/1365-2745.13662

Clocchiatti, A., Hannula, S. E., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., & de Boer, W. (2021). Stimulated saprotrophic fungi in arable soil extend their activities to the rhizosphere and root microbiomes of crop seedlings. Environmental Microbiology, 23(10), 6056-6073. https://doi.org/10.1111/1462-2920.15563

Donis, D., Mantzouki, E., McGinnis, D. F., Vachon, D., Gallego, I., Grossart, H-P., de Senerpont Domis, L. N., Teurlincx, S., Seelen, L., Lürling, M., Verstijnen, Y., Maliaka, V., Fonvielle, J., Visser, P. M., Verspagen, J., van Herk, M., Antoniou, M. G., Tsiarta, N., McCarthy, V.,... Ibelings, B. W. (2021). Stratification strength and light climate explain variation in chlorophyll a at the continental scale in a European multilake survey in a heatwave summer. Limnology and Oceanography, 66(12), 4314-4333. https://doi.org/10.1002/lno.11963

Wang, Z., Chen, Z., Kowalchuk, G., Xu, Z., Fu, X., & Kuramae, E. (2021). Succession of the Resident Soil Microbial Community in Response to Periodic Inoculations. Applied and Environmental Microbiology, 87(9), [e00046-21]. https://doi.org/10.1128/AEM.00046-21

Cordovez, V., Rotoni, C., Dini-Andreote, F., Oyserman, B. O., Carrión, V. J., & Raaijmakers, J. M. (2021). Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome. Science of the Total Environment, 772, [144825]. https://doi.org/10.1016/j.scitotenv.2020.144825

Rossetto, L., Pierangeli, G. M. F., Kuramae, E., Xavier, M., Cipriano, M., & da Silveira, A. P. D. (2021). Sugarcane pre-sprouted seedlings produced with beneficial bacteria and arbuscular mycorrhizal fungi. Bragantia, 80. https://doi.org/10.1590/1678-4499.20200276

Lin, Q., Zhang, K., McGowan, S., Capo, E., & Shen, J. (2021). Synergistic impacts of nutrient enrichment and climate change on long-term water quality and ecological dynamics in contrasting shallow-lake zones. Limnology and Oceanography, 66(9), 3271-3286. https://doi.org/10.1002/lno.11878

Wei, X., Ge, T., Wu, C., Wang, S., Mason-Jones, K., Li, Y., Zhu, Z., Hu, Y., Liang, C., Shen, J., Wu, J., & Kuzyakov, Y. (2021). T4-like Phages Reveal the Potential Role of Viruses in Soil Organic Matter Mineralization. Environmental Science and Technology, 55(9), 6440-6448. https://doi.org/10.1021/acs.est.0c06014

Lee Díaz, A. S., Macheda, D., Saha, H., Ploll, U., Orine, D., & Biere, A. (2021). Tackling the context-dependency of microbial-induced resistance. Agronomy, 11(7), [1293]. https://doi.org/10.3390/agronomy11071293

Atema, E., Van Noordwijk, A., & Verhulst, S. (2021). Telomere dynamics in relation to experimentally increased locomotion costs and fitness in great tits. Molecular Ecology, In press. https://doi.org/10.1111/mec.16162

Zhang, P., Kong, X., Bakker, E. S., Xu, J., & Zhang, M. (2021). Temperature affects carbon and nitrogen stable isotopic signatures of aquatic plants. Aquatic Sciences, 83(2), [39]. https://doi.org/10.1007/s00027-021-00794-8

Lindner, M., Verhagen, I., Viitaniemi, H. M., Laine, V. N., Visser, M. E., Husby, A., & van Oers, K. (2021). Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons. BMC Genomics, 22(1), [36]. https://doi.org/10.1186/s12864-020-07329-9

Beng, K. C., Wolinska, J., Funke, E., Van Den Wyngaert, S., Gsell, A. S., & Monaghan, M. T. (2021). Temporal dynamics of freshwater planktonic parasites inferred using a DNA metabarcoding time-series. Parasitology, 148(3). https://doi.org/10.1017/S0031182021001293

de Groot, G. A., Geisen, S., Wubs, E. R. J., Meulenbroek, L., Laros, I., Snoek, L. B., Lammertsma, D. R., Hansen, L. H., & Slim, P. A. (2021). The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air. Environment International, 154, [106551]. https://doi.org/10.1016/j.envint.2021.106551

Rizaludin, M. S., Stopnisek, N., Raaijmakers, J. M., & Garbeva, P. (2021). The Chemistry of Stress: Understanding the ‘Cry for Help’ of Plant Roots. Metabolites, 11(6). https://doi.org/10.3390/metabo11060357

Mäkinen, H., van Oers, K., Eeva, T., & Ruuskanen, S. (2021). The effect of experimental lead pollution on DNA methylation in a wild bird population. Epigenetics, In press. https://doi.org/10.1080/15592294.2021.1943863

Voigt, C. C., Dekker, J., Fritze, M., Gazaryan, S., Hölker, F., Jones, G., Lewanzik, D., Limpens, H. J. G. A., Mathews, F., Rydell, J., Spoelstra, K., & Zagmajster, M. (2021). The Impact of Light Pollution on Bats Varies According to Foraging Guild and Habitat Context. BioScience, 71(10), 1103-1109. https://doi.org/10.1093/biosci/biab087

Henderson, A. C. G., Das, S., Ghosh, T., Panizzo, V. N., Moorhouse, H. L., Roberts, L. R., Walton, R. E., Zheng, Y., Bass, A. M., & McGowan, S. (2021). The Indian Sundarbans: Biogeochemical Dynamics and Anthropogenic Impacts. In S. Das, & T. Ghosh [Eds.], Estuarine Biogeochemical Dynamics of the East Coast of India (pp. 239-260). Springer International Publishing AG. https://doi.org/10.1007/978-3-030-68980-3_15

Costa, O. Y. A., & Kuramae, E. (2021). The influence of agar brands and micronutrients in the growth optimization of Granulicella sp. (Acidobacteriota). Journal of Microbiological Methods, 181, [106148]. https://doi.org/10.1016/j.mimet.2021.106148

de Jonge, C., Kuramae, E., Radujković, D., Weedon, J. T., Janssens, I. A., & Peterse, F. (2021). The influence of soil chemistry on branched tetraether lipids in mid- and high latitude soils: implications for brGDGT- based paleothermometry. Geochimica et Cosmochimica Acta, 310, 95-112. https://doi.org/10.1016/j.gca.2021.06.037

Luviano, N., Lopez, M., Gawehns, F., Chaparro, C., Arimondo, P. B., Ivanovic, S., David, P., Verhoeven, K., Cosseau, C., & Grunau, C. (2021). The methylome of Biomphalaria glabrata and other mollusks: enduring modification of epigenetic landscape and phenotypic traits by a new DNA methylation inhibitor. Epigenetics and Chromatin, 14(1), [48]. https://doi.org/10.1186/s13072-021-00422-7

Bulteel, L., Houwenhuyse, S., Declerck, S. A. J., & Decaestecker, E. (2021). The role of microbiome and genotype in Daphnia magna upon parasite re-exposure. Genes, 12(1), [70]. https://doi.org/10.3390/genes12010070

Pan, Y., Yao, Z., Zhang, N., & Veen, G. F. (2021). The role of soil-borne fungi in driving the coexistence of Pinus massoniana and Lithocarpus glaber in a subtropical forest via plant-soil feedback. Journal of Plant Ecology, 14(6), 1189–1203. https://doi.org/10.1093/jpe/rtab058

Chang, J., Sun, Y., Tian, L., Ji, L., Luo, S., Nasir, F., Kuramae, E., & Tian, C. (2021). The structure of rhizosphere fungal communities of wild and domesticated rice: changes in diversity and co-occurrence patterns. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.610823

Harvey, J. A., Thakur, M. P., & Ellers, J. (2021). The Tarnished Silver Lining of Extreme Climatic Events. Trends in Ecology and Evolution, 36(5), 384-385. https://doi.org/10.1016/j.tree.2021.02.005

Seelen, L., Teurlincx, S., Bruinsma, J., Huijsmans, T., van Donk, E., Lurling, M., & de Senerpont Domis, L. (2021). The value of novel ecosystems: disclosing the ecological quality of quarry lakes. Science of the Total Environment, 769, [144294]. https://doi.org/10.1016/j.scitotenv.2020.144294

van Dis, N. E., van der Zee, M., Hut, R. A., Wertheim, B., & Visser, M. E. (2021). Timing of increased temperature sensitivity coincides with nervous system development in winter moth embryos. Journal of Experimental Biology, 224(17). https://doi.org/10.1242/jeb.242554

Dini-Andreote, F., Kowalchuk, G. A., Prosser, J. I., & Raaijmakers, J. M. (2021). Towards meaningful scales in ecosystem microbiome research. Environmental Microbiology, 23(1). https://doi.org/10.1111/1462-2920.15276

O’Dea, R. E., Parker, T. H., Chee, Y. E., Culina, A., Drobniak, S. M., Duncan, D. H., Fidler, F., Gould, E., Ihle, M., Kelly, C. D., Lagisz, M., Roche, D. G., Sánchez-Tójar, A., Wilkinson, D. P., Wintle, B. C., & Nakagawa, S. (2021). Towards open, reliable, and transparent ecology and evolutionary biology. BMC Biology, 19(1), [68]. https://doi.org/10.1186/s12915-021-01006-3

Mulder, A. J. E., van Aalderen, R., & van Leeuwen, C. H. A. (2021). Tracking temperate fish reveals their relevance for plant seed dispersal. Functional Ecology, 35(5), 1134-1144. https://doi.org/10.1111/1365-2435.13757

Colina, M., Meerhoff, M., Pérez, G., Veraart, A., Bodelier, P., van der Horst, A., & Kosten, S. (2021). Trophic and non-trophic effects of fish and macroinvertebrates on carbon emissions. Freshwater Biology, 66(9), 1831-1845. https://doi.org/10.1111/fwb.13795

Moorhouse, H. L., Roberts, L. R., McGowan, S., Panizzo, V. N., Barker, P., Salehin, M., Do, T. N., Nguyen Thanh, P., Rahman, M. F., Ghosh, T., Das, S., Hackney, C., Salgado, J., Roy, M., Opel, A., Henderson, A. C. G., & Large, A. R. G. (2021). Tropical Asian mega-delta ponds: Important and threatened socio-ecological systems. Geo: Geography and Environment, 8(2), e00103. https://doi.org/10.1002/geo2.103

Ossowicki, A. (2021). Understanding disease suppressive soils: molecular and chemical identification of microorganisms and mechanisms involved in soil suppressiveness to Fusarium culmorum of wheat (PhD Thesis). https://hdl.handle.net/1887/3180746

Zhang, W. (2021). Unraveling hidden biodiversity: An example of integrative taxonomy applied to the hybridizing Brachionus calyciflorus species complex (PhD Thesis). https://doi.org/10.33540/427

Zwart, M. P., Blanc, S., Johnson, M., Manrubia, S., Michalakis, Y., & Sofonea, M. T. (2021). Unresolved advantages of multipartitism in spatially structured environments. Virus Evolution, 7(1), [veab004]. https://doi.org/10.1093/ve/veab004

Crusciol, C. A. C., Momesso, L., Portugal, J. R., Costa, C. H. M., Bossolani, J. W., Costa, N. R., Pariz, C. M., Castilhos, A. M., Rodrigues, V. A., Costa, C., Franzluebbers, A. J., & Cantarella, H. (2021). Upland rice intercropped with forage grasses in an integrated crop-livestock system: Optimizing nitrogen management and food production. Field Crops Research, 261, [108008]. https://doi.org/10.1016/j.fcr.2020.108008

Lockett, M. T., Jones, T. M., Elgar, M. A., Gaston, K. J., Visser, M. E., & Hopkins, G. R. (2021). Urban street lighting differentially affects community attributes of airborne and ground-dwelling invertebrate assemblages. Journal of Applied Ecology, 58(10), 2329-2339. https://doi.org/10.1111/1365-2664.13969

Cheng, X-Y., Liu, X-Y., Wang, H-M., Su, C-T., Zhao, R., Bodelier, P., Wang, W-Q., Ma, L-Y., & Lu, X-L. (2021). USCγ Dominated Community Composition and Cooccurrence Network of Methanotrophs and Bacteria in Subterranean Karst Caves. Microbiology spectrum, 9(1), [e00820-21]. https://doi.org/10.1128/Spectrum.00820-21

Meyer, M. F., Ladwig, R., Dugan, H. A., Anderson, A., Bah, A. R., Boehrer, B., Borre, L., Chapina, R. J., Doyle, C., Favot, E. J., Flaim, G., Forsberg, P., Hanson, P. C., Ibelings, B. W., Isles, P., Lin, F-P., Lofton, D., Moore, T. N., Peel, S.,... Weathers, K. C. (2021). Virtual Growing Pains: Initial Lessons Learned from Organizing Virtual Workshops, Summits, Conferences, and Networking Events during a Global Pandemic. Limnology and Oceanography Bulletin, 30(1), 1-11. https://doi.org/10.1002/lob.10431

Moisan, K., Dicke, M., Raaijmakers, J. M., Rachmawati, E., & Cordovez, V. (2021). Volatiles from the fungus Fusarium oxysporum affect interactions of Brassica rapa plants with root herbivores. Ecological Entomology, 46(2), 240-248. https://doi.org/10.1111/een.12956

van der Kolk, H-J., Ens, B. J., Frauendorf, M., Jongejans, E., Oosterbeek, K., Bouten, W., & van de Pol, M. (2021). Why time-limited individuals can make populations more vulnerable to disturbance. Oikos, 130(4), 637-651. https://doi.org/10.1111/oik.08031

Gols, R., Ojeda-Prieto, L. M., Li, K., van der Putten, W. H., & Harvey, J. A. (2021). Within-patch and edge microclimates vary over a growing season and are amplified during a heatwave: Consequences for ectothermic insects. Journal of Thermal Biology, 99, [103006]. https://doi.org/10.1016/j.jtherbio.2021.103006

Kostenko, O., & Bezemer, T. M. (2020). Abiotic and Biotic Soil Legacy Effects of Plant Diversity on Plant Performance. Frontiers in Ecology and Evolution, 8, [fevo.2020.00087]. https://doi.org/10.3389/fevo.2020.00087

Steinauer, K., Heinen, R., Hannula, E., De Long, J., Huberty, M. D., Jongen, R., Wang, M., & Bezemer, T. M. (2020). Above-belowground linkages of functionally dissimilar plant communities and soil properties in a grassland experiment. Ecosphere, 11(2020), [e03246]. https://doi.org/10.1002/ecs2.3246

Huberty, M. D., Choi, Y. H., Heinen, R., & Bezemer, T. M. (2020). Aboveground plant metabolomic responses to plant-soil feedbacks and herbivory. Journal of Ecology, 108(4), 1703-1712. https://doi.org/10.1111/1365-2745.13394

Bont, Z., Pfander, M., Robert, C. A. M., Huber, M., Poelman, E. H., Raaijmakers, C. E., & Erb, M. (2020). Adapted dandelions trade dispersal for germination upon root herbivore attack. Proceedings of the Royal Society B-Biological Sciences, 287(1921), [2930]. https://doi.org/10.1098/rspb.2019.2930

Li, X., Zhu, H., Geisen, S., Bellard, C., Hu, F., Li, H., Chen, X., & Liu, M. (2020). Agriculture erases climate constraints on soil nematode communities across large spatial scales. Global Change Biology, 26(2), 919-930. https://doi.org/10.1111/gcb.14821

Garbeva, P., & Weisskopf, L. (2020). Airborne medicine - Bacterial volatiles and their influence on plant health: Transley review. New Phytologist, 226(1), 32-43. https://doi.org/10.1111/nph.16282

Shahryary, Y., Symeonidi, A., Hazarika, R. R., Denkena, J., Mubeen, T., Hofmeister, B., Van Gurp, T., Colomé-Tatché, M., Verhoeven, K. J. F., Tuskan, G., Schmitz, R. J., & Johannes, F. (2020). AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants. Genome Biology, 21(1), [260]. https://doi.org/10.1186/s13059-020-02161-6

van Leeuwen, C. H. A., Tella, J. L., & Green, A. J. (2020). Animal-Mediated Dispersal in Understudied Systems: Editorial. Frontiers in Ecology and Evolution, 7, [508]. https://doi.org/10.3389/fevo.2019.00508

Floková, K., Shimels, M., Andreo Jimenez, B., Bardaro, N., Strnad, M., Novák, O., & Bouwmeester, H. J. (2020). An improved strategy to analyse strigolactones in complex sample matrices using UHPLC-MS/MS. Plant Methods, 16(1), [125]. https://doi.org/10.1186/s13007-020-00669-3

Gulati, S., Ballhausen, M-B., Kulkarni, P., Grosch, R., & Garbeva, P. (2020). A non-invasive soil based setup to study tomato root volatiles released by healthy and infected roots. Scientific Reports, 10, [12704]. https://doi.org/10.1038/s41598-020-69468-z

Yang, Q., Biere, A., Harvey, J. A., Ding, J., & Siemann, E. (2020). Antagonistic interactions between above- and belowground biota reduce their negative effects on a tree species. Plant and Soil, 454(1), 379-393. https://doi.org/10.1007/s11104-020-04642-w

Halfwerk, W., & van Oers, K. (2020). Anthropogenic noise impairs foraging for cryptic prey via cross-sensory interference. Proceedings of the Royal Society B-Biological Sciences, 287(1924), [20192951]. https://doi.org/10.1098/rspb.2019.2951

Nuijten, R., Vriend, S. J. G., Wood, K. A., Haitjema, T., Rees, E. C., Jongejans, E., & Nolet, B. A. (2020). Apparent breeding success drives long-term population dynamics of a migratory swan. Journal of Avian Biology, 51(11), [e02574]. https://doi.org/10.1111/jav.02574

Dominoni, D. M., Kjellberg Jensen, J., de Jong, M., Visser, M. E., & Spoelstra, K. (2020). Artificial light at night, in interaction with spring temperature, modulates timing of reproduction in a passerine bird. Ecological Applications, 30(3), [e02062]. https://doi.org/10.1002/eap.2062

Hipsey, M. R., Gal, G., Arhonditsis, G. B., Carey, C. C., Elliott, J. A., Frassl, M. A., Janse, J. H., de Mora, L., & Robson, B. J. (2020). A system of metrics for the assessment and improvement of aquatic ecosystem models. Environmental Modelling and Software, 128. https://doi.org/10.1016/j.envsoft.2020.104697

Elsayed, S. S., Genta-Jouve, G., Carrión, V. J., Nibbering, P. H., Siegler, M. A., de Boer, W., Hankemeier, T., & van Wezel, G. P. (2020). Atypical Spirotetronate Polyketides Identified in the Underexplored Genus Streptacidiphilus. Journal of organic chemistry, 85(16), 10648-10657. https://doi.org/10.1021/acs.joc.0c01210

Gehring, C., Zelarayán, M. C., Luz, R. L., Almeida, R. B., Boddey, R. M., & Leite, M. F. A. (2020). Babassu palm (Attalea speciosa Mart.) super-dominance shapes its surroundings via multiple biotic, soil chemical, and physical interactions and accumulates soil carbon: a case study in eastern Amazonia. Plant and Soil, 454(1-2), 447–460. https://doi.org/10.1007/s11104-020-04580-7

Moretti de Souza, L., Cruciol, C. A. C., Bossolani, J. W., Momesso, L., Garcia, A., Kuramae, E., & Hungria, M. (2020). Bacterial consortium and microbial metabolites increase grain quality and soybean yield. Journal of Soil Science and Plant Nutrition, 20(4), 1923–1934. https://doi.org/10.1007/s42729-020-00263-5

Su, L., Zhang, L., Qiu, P., Nie, D., Kuramae, E., Shen, B., & Shen, Q. (2020). Bacterial Tomato Pathogen Ralstonia solanacearum Invasion Modulates Rhizosphere Compounds and Facilitates the Cascade Effect of Fungal Pathogen Fusarium solani. Microorganisms, 8(6), [806]. https://doi.org/10.3390/microorganisms8060806

Injaian, A. S., Francis, C. D., Ouyang, J. Q., Dominoni, D. M., Donald, J. W., Fuxjager, M. J., Goymann, W., Hau, M., Husak, J. F., Johnson, M. A., Kircher, B. K., Knapp, R., Martin, L. B., Miller, E. T., Schoenle, L. A., Williams, T. D., & Vitousek, M. N. (2020). Baseline and stress-induced corticosterone levels across birds and reptiles do not reflect urbanization levels. Conservation Physiology, 8(1), [coz110]. https://doi.org/10.1093/conphys/coz110

Nuijten, R. (2020). Bewick's swans in a changing world: Species responses and the need for dynamic nature conservation (PhD Thesis). https://hdl.handle.net/11245.1/07de5b40-d7a5-4259-83e8-af77f02c213c

Song, C., Zhu, F., Carrión, V. J., & Cordovez, V. (2020). Beyond Plant Microbiome Composition: Exploiting Microbial Functions and Plant Traits via Integrated Approaches. Frontiers in bioengineering and biotechnology, 8, [896]. https://doi.org/10.3389/fbioe.2020.00896

Amacker, N., Gao, Z., Agaras, B., Latz, E., Kowalchuk, G. A., Valverde, C., Jousset, A. L., & Weidner, S. (2020). Biocontrol traits correlate with resistance to predation by protists in soil pseudomonads. Frontiers in Microbiology, 11, [614194]. https://doi.org/10.3389/fmicb.2020.614194

Buzhdygan, O. Y., Meyer, S. T., Weisser, W. W., Eisenhauer, N., Ebeling, A., Borrett, S. R., Buchmann, N., Cortois, R., De Deyn, G. B., de Kroon, H., Gleixner, G., Hertzog, L. R., Hines, J., Lange, M., Mommer, L., Ravenek, J., Scherber, C., Scherer-Lorenzen, M., Scheu, S.,... Petermann, J. S. (2020). Biodiversity increases multitrophic energy use efficiency, flow and storage in grasslands. Nature Ecology and Evolution, 4(3), 393-405. https://doi.org/10.1038/s41559-020-1123-8

Nardi, P., Laanbroek, H. J., Nicol, G. W., Renella, G., Cardinale, M., Pietramellara, G., Weckwerth, W., Trinchera, A., Ghatak, A., & Nannipieri, P. (2020). Biological nitrification inhibition in the rhizosphere: Determining interactions and impact on microbially mediated processes and potential applications. FEMS Microbiology Reviews, 44(6), 874-908. [fuaa037]. https://doi.org/10.1093/femsre/fuaa037

Tao, C., Li, R., Xiong, W., Shen, Z., Liu, S., Wang, B., Ruan, Y., Geisen, S., Shen, Q., & Kowalchuk, G. A. (2020). Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression. Microbiome, 8(1), [137]. https://doi.org/10.1186/s40168-020-00892-z

Maberly, S., Jeppesen, E., Barker, T., Beklioğlu, M., Carvalho, L., He, H., McGowan, S., Meerhoff, M., Nandini, S., Sarma, S. S. S., Søndergaard, M., & Vidal, N. (2020). Brian Moss: the wizard of shallow lakes. Inland Waters, 10(2), 153-158. https://doi.org/10.1080/20442041.2020.1756180

Nuijten, R., Prins, E. F., Lammers, J., Mager, C., & Nolet, B. A. (2020). Calibrating tri-axial accelerometers for remote behavioural observations in Bewick's swans. Journal of Zoo and Aquarium Research, 8(4), 231-238. https://doi.org/10.19227/jzar.v8i4.522

Orama, N. J., van Groeningen, J. W., Bodelier, P., Brenzinger, K., Cornelissen, J. H. C., De Deyn, G., & Abalos, D. (2020). Can flooding-induced greenhouse gas emissions be mitigated by trait-based plant species choice? Science of the Total Environment, 727(20 July), [138476]. https://doi.org/10.1016/j.scitotenv.2020.138476

Costa, N., Andreotti, M., Costa Crusciol, C. A., Magelhaes Pariz, C., Bossolani, J. W., de Castilhos, A. M., Costa do Nascimento, C. A., da Rocha Lima, C. G., dos Santos Batista Bonini, C., & Kuramae, E. (2020). Can Palisade and Guinea Grass Sowing Time in Intercropping Systems Affect Soybean Yield and Soil Chemical Properties? Frontiers In Sustainable Food Systems, 4, [81]. https://doi.org/10.3389/fsufs.2020.00081

Nuijten, R., & Nolet, B. A. (2020). Chains as strong as the weakest link: remote assessment of aquatic resource use on spring migration by Bewick's Swans. Avian Conservation and Ecology, 15(2), [14]. https://doi.org/10.5751/ACE-01682-150214

Domis, L. N. D. S., & Teurlincx, S. (2020). Changing human-ecosystem interactions during COVID-19 pandemic: reflections from an urban aquatic ecology perspective. Current Opinion in Environmental Sustainability, 46, 32-34. https://doi.org/10.1016/j.cosust.2020.10.008

Swann, G. E. A., Panizzo, V. N., Piccolroaz, S., Pashley, V., Horstwood, M. S. A., Roberts, S., Vologina, E., Piotrowska, N., Sturm, M., Zhdanov, A., Granin, N., Norman, C., McGowan, S., & Mackay, A. W. (2020). Changing nutrient cycling in Lake Baikal, the world’s oldest lake. Proceedings of the National Academy of Sciences of the United States of America, 117(44), 27211-27217. https://doi.org/10.1073/pnas.2013181117

Kleijn, D., Biesmeijer, K. J. C., Klaassen, R. H. G., Oerlemans, N., Raemakers, I., Scheper, J., & Vet, L. E. M. (2020). Chapter Four - Integrating biodiversity conservation in wider landscape management: Necessity, implementation and evaluation. In D. A. Bohan, & A. J. Vanbergen [Eds.], The Future of Agricultural Landscapes, Part I (Vol. 63, pp. 127-159). Academic Press. https://doi.org/10.1016/bs.aecr.2020.08.004

Gu, Y., Wang, X., Yang, T., Friman, V. P., Geisen, S., Wei, Z., Xu, Y., Jousset, A., & Shen, Q. (2020). Chemical structure predicts the effect of plant-derived low-molecular weight compounds on soil microbiome structure and pathogen suppression. Functional Ecology, 34(10), 2158-2169. https://doi.org/10.1111/1365-2435.13624

Harvey, J. A., Heinen, R., Gols, R., & Thakur, M. P. (2020). Climate change-mediated temperature extremes and insects: From outbreaks to breakdowns. Global Change Biology, 26(12), 6685-6701. https://doi.org/10.1111/gcb.15377

Thakur, M. P., Bakker, E. S., Veen, G. F., & Harvey, J. A. (2020). Climate Extremes, Rewilding, and the Role of Microhabitats. One Earth, 2(6), 506-509. https://doi.org/10.1016/j.oneear.2020.05.010

Thakur, M. P. (2020). Climate warming and trophic mismatches in terrestrial ecosystems: the green-brown imbalance hypothesis. Biology Letters, 16(2), [20190770]. https://doi.org/10.1098/rsbl.2019.0770

Lürling, M., Kang, L., Mucci, M., van Oosterhout, F., Noyma, N. P., Miranda, M., Huszar, V. L. M., Waajen, G., & Marinho, M. M. (2020). Coagulation and precipitation of cyanobacterial blooms. Ecological Engineering, 158, [106032]. https://doi.org/10.1016/j.ecoleng.2020.106032

Koorem, K., Snoek, B., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K., Weser, C., Wilschut, R., & van der Putten, W. H. (2020). Community-level interactions between plants and soil biota during range expansion. Journal of Ecology, 108(5), 1860-1873. https://doi.org/10.1111/1365-2745.13409

Ramakers, J. J. C., Gienapp, P., & Visser, M. E. (2020). Comparing two measures of phenological synchrony in a predator–prey interaction: Simpler works better. Journal of Animal Ecology, 89(3), 745-756. https://doi.org/10.1111/1365-2656.13143

Moonga, H. B., Schoustra, S. E., van den Heuvel, J., Linnemann, A. R., Samad, M. S., Shindano, J., & Smid, E. J. (2020). Composition and Diversity of Natural Bacterial Communities in Mabisi, a Traditionally Fermented Milk. Frontiers in Microbiology, 11, [1816]. https://doi.org/10.3389/fmicb.2020.01816

Nuijten, R., Wood, K. A., Haitjema, T., Rees, E. C., & Nolet, B. A. (2020). Concurrent shifts in wintering distribution and phenology in migratory swans: individual and generational effects. Global Change Biology. https://doi.org/10.1111/gcb.15151

Pineda, A. M., Kaplan, I., Hannula, E., Ghanem, W., & Bezemer, T. M. (2020). Conditioning the soil microbiome through plant-soil feedbacks suppresses an aboveground insect pest. New Phytologist, 226(2), 595-608. https://doi.org/10.1111/nph.16385

Contreras-Dávila, C. A., Carrión, V. J., Vonk, V. R., Buisman, C. N. J., & Strik, D. P. B. T. B. (2020). Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation. Water Research, 169, [115215]. https://doi.org/10.1016/j.watres.2019.115215

Nolet, B. A., Schreven, K. H. T., Boom, M. P., & Lameris, T. (2020). Contrasting effects of the onset of spring on reproductive success of Arctic-nesting geese. Auk, 137(1,2), [ukz063]. https://doi.org/10.1093/auk/ukz063

Zheng, Y., Hu, X., Jia, Z., Bodelier, P., Guo, Z., Zhang, Y., Li, F., Li, X., & He, P. (2020). Co-occurrence patterns among prokaryotes across an age gradient in pit mud of Chinese strong-flavor liquor. Canadian Journal of Microbiology, 66(9), 495–504. https://doi.org/10.1139/cjm-2020-0012

Costa, O. Y. A., De Hollander, M., Pijl, A., Liu, B., & Kuramae, E. (2020). Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer. Microbiome, in press, [76]. https://doi.org/10.1186/s40168-020-00836-7

van der Kolk, H., Krijgsveld, K. L., Linssen, H., Diertens, R. J., Dolman, D. D., Jans, M., Frauendorf, M., Ens, B. J., & Van de Pol, M. (2020). Cumulative energetic costs of military aircraft, recreational and natural disturbance in roosting shorebirds. Animal Conservation, 23(4), 359-372. https://doi.org/10.1111/acv.12546

Drost, S. M., Rutgers, M., Wouterse, M., De Boer, W., & Bodelier, P. (2020). Decomposition of mixtures of cover crop residues increases microbial functional diversity. Geoderma, 361, [114060]. https://doi.org/10.1016/j.geoderma.2019.114060

Wilke, T., Hauffe, T., Jovanovska, E., Cvetkoska, A., Donders, T., Ekschmitt, K., Francke, A., Lacey, J. H., Levkov, Z., Marshall, C. R., Neubauer, T. A., Silvestro, D., Stelbrink, B., Vogel, H., Albrecht, C., Holtvoeth, J., Krastel, S., Leicher, N., Leng, M. J.,... Wagner, B. (2020). Deep drilling reveals massive shifts in evolutionary dynamics after formation of ancient ecosystem. Science advances, 6(40), [eabb2943]. https://doi.org/10.1126/sciadv.abb2943

Sikkema, R. S., Schrama, M., Van Den Berg, T., Morren, J., Munger, E., Krol, L., Van DerBeek, J. G., Blom, R., Chestakova, I., Van Der Linden, A., Boter, M., Van Mastrigt, T., Molenkamp, R., Koenraadt, C. J. M., Van Den Brand, J. M. A., Munnink, B. B. O., Koopmans, M. P. G., & Van Der Jeugd, H. (2020). Detection of west nile virus in a common whitethroat (curruca communis) and culex mosquitoes in the Netherlands, 2020. Eurosurveillance, 25(40), 1-6. https://doi.org/10.2807/1560-7917.ES.2020.25.40.2001704

Sun, R., Gols, R., Harvey, J. A., Reichelt, M., Gershenzon, J., Pandit, S. S., & Vassão, D. G. (2020). Detoxification of plant defensive glucosinolates by an herbivorous caterpillar is beneficial to its endoparasitic wasp. Molecular Ecology, 29(20), 4014-4031. https://doi.org/10.1111/mec.15613

Chen, X., McGowan, S., Bu, Z-J., Yang, X-D., Cao, Y-M., Bai, X., Zeng, L-H., Liang, J., & Qiao, Q-L. (2020). Diatom-based water-table reconstruction in Sphagnum peatlands of northeastern China. Water Research, 174, [115648]. https://doi.org/10.1016/j.watres.2020.115648

Briddon, C. L., McGowan, S., Metcalfe, S. E., Panizzo, V., Lacey, J., Engels, S., Leng, M., Mills, K., Shafiq, M., & Idris, M. (2020). Diatoms in a sediment core from a flood pulse wetland in Malaysia record strong responses to human impacts and hydro-climate over the past 150 years. Geo: Geography and Environment, 7(1), e00090. https://doi.org/10.1002/geo2.90

Petruzzella, A., van Leeuwen, C. H. A., van Donk, E., & Bakker, E. S. (2020). Direct and indirect effects of native plants and herbivores on biotic resistance to alien aquatic plant invasions. Journal of Ecology, 108(4), 1487-1496. https://doi.org/10.1111/1365-2745.13380

Masteling, R., Voorhoeve, L., Ijsselmuiden, J., Dini-Andreote, F., De Boer, W., & Raaijmakers, J. M. (2020). DiSCount: computer vision for automated quantification of Striga seed germination. Plant Methods, 16(60). https://doi.org/10.1186/s13007-020-00602-8

Paseka, R., White, L., Van de Waal, D., Strauss, A., González, A., Everett, R., Peace, A., Seabloom, E. W., Frenken, T., & Borer, E. T. (2020). Disease-mediated ecosystem services: Pathogens, plants, and people. Trends in Ecology & Evolution, 35(8), 731-743. https://doi.org/10.1016/j.tree.2020.04.003

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., van Kleunen, M., van der Putten, W. H., Vilà, M., & Bacher, S. (2020). Distinct Biogeographic Phenomena Require a Specific Terminology: A Reply to Wilson and Sagoff: Letter. BioScience, 70(2), 112-114. https://doi.org/10.1093/biosci/biz161

van Langevelde, F., Comor, V., de Bie, S., Prins, H. H. T., & Thakur, M. P. (2020). Disturbance regulates the density–body-mass relationship of soil fauna. Ecological Applications, 30(1), [e02019]. https://doi.org/10.1002/eap.2019

Zhang, L., Dumont, M. G., Bodelier, P. L. E., Adams, J. M., He, D., & Chu, H. (2020). DNA stable-isotope probing highlights the effects of temperature on functionally active methanotrophs in natural wetlands. Soil Biology & Biochemistry, 149, [107954]. https://doi.org/10.1016/j.soilbio.2020.107954

de Boer, J. G., Hollander, P. J., Heinen, D., Jagger, D., van Sliedregt, P., Salis, L., Kos, M., & Vet, L. E. M. (2020). Do plant volatiles confuse rather than guide foraging behavior of the aphid hyperparasitoid Dendrocerus aphidum? Chemoecology, 30(6), 315-325. https://doi.org/10.1007/s00049-020-00321-5

Kirchner, N., Cano-Prieto, C., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2020). Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with Pseudomonas sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain. Microbiology Resource Announcements, 9(21), [00304-20]. https://doi.org/10.1128/MRA.00304-20

Kirchner, N., Cano-Prieto, C., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2020). Draft Genome Sequence of Pseudomonas fluorescens DSM 11579 and Comparative Genomics with Pseudomonas sp. SH-C52, two Lipopeptide. Microbiology Resource Announcements, 9(21). https://doi.org/10.1128/MRA.00304-20

Lourenço, K. S., Suleiman, A. K. A., Pijl, A., Cantarella, H., & Kuramae, E. (2020). Dynamics and resilience of soil mycobiome under multiple organic and inorganic pulse disturbances. Science of the Total Environment, 733(1 september), [139173]. https://doi.org/10.1016/j.scitotenv.2020.139173

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Lessons from the Amazon biome: impact of management practices on aboveground-belowground interactions

Linking microbial inoculants and associated changes in the soil microbiome to plant-soil performance in degraded lands

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