Recent scientific publications (2017 - )
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Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A.,... van der Hooft, J. J. J. (2021). A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 17(4), 363-368. https://doi.org/10.1038/s41589-020-00724-zZhou, L., & Declerck, S. A. J. (2021). A critical assessment of the stoichiometric knife-edge: no evidence for artefacts caused by the experimental P-supplementation. Aquatic Ecology, in press. https://doi.org/10.1007/s10452-021-09867-0Berendse, F., Geerts, R. H. E. M., Elberse, W. T., Bezemer, T. M., Goedhart, P. W., Xue, W., Noordijk, E., ter Braak, C. J. F., & Korevaar, H. (2021). A matter of time: Recovery of plant species diversity in wild plant communities at declining nitrogen deposition. Diversity and Distributions, 27(7), 1180-1193. https://doi.org/10.1111/ddi.13266Tennyson, A. J. D., & Tomotani, B. M. (2021). A new fossil species of kiwi (Aves: Apterygidae) from the mid-Pleistocene of New Zealand. Historical Biology, In press. https://doi.org/10.1080/08912963.2021.1916011Fox, A. D., Frederiksen, M., Heinicke, T., Clausen, K. K., & van der Jeugd, H. P. (2021). Annual survival estimates of Taiga Anser fabalis and Tundra Bean Geese A. serrirostris wintering in The Netherlands, 1967–1987. Journal of Ornithology, 162, 925–929. https://doi.org/10.1007/s10336-021-01883-zBircher, N., van Oers, K., & Naguib, M. (2021). Anyone listening? No evidence for eavesdropping on male singing interactions in the great tit, Parus major. Animal Behaviour, 176, 67-76. https://doi.org/10.1016/j.anbehav.2021.03.009Barré, K., Kerbiriou, C., Ing, R. K., Bas, Y., Azam, C., Le Viol, I., & Spoelstra, K. (2021). Bats seek refuge in cluttered environment when exposed to white and red lights at night. Movement Ecology, 9(1), [3]. https://doi.org/10.1186/s40462-020-00238-2Moretti de Souza, L., Crusciol, C. A. C., Bossolani, J. W., Calonego, J. C., Moreira, A., Garcia, A., Momesso, L., Kuramae, E., & Hungria, M. (2021). Beneficial microbial species and metabolites alleviate soybean oxidative damage and increase grain yield during short dry spells. European Journal of Agronomy, 127, [126293]. https://doi.org/10.1016/j.eja.2021.126293Clocchiatti, A. (2021). Bringing soil fungi into action: Options for forward-looking agriculture (PhD Thesis). Wageningen University. https://doi.org/10.18174/537032Taparia, T., Hendrix, E., Hendriks, M., Nijhuis, E., de Boer, W., & van der Wolf, J. (2021). Casing soil microbiome mediates suppression of bacterial blotch of mushrooms during consecutive cultivation cycles. Soil Biology and Biochemistry, 155, [108161]. https://doi.org/10.1016/j.soilbio.2021.108161Frenken, T., Paseka, R., González, A., Asik, L., Seabloom, E. W., White, L., Borer, E. T., Strauss, A. T., Peace, A., & van de Waal, D. B. (2021). Changing elemental cycles, stoichiometric mismatches, and consequences for pathogens of primary producers. Oikos, 130(7), 1046-1055. https://doi.org/10.1111/oik.08253Janssen, A. B. G., Droppers, B., Kong, X., Teurlincx, S., Tong, Y., & Kroeze, C. (2021). Characterizing 19 Thousand Chinese Lakes, Ponds and Reservoirs by Morphometric, Climate and Sediment Characteristics. Water Research, in press. https://doi.org/10.1016/j.watres.2021.117427Andreo-Jimenez, B., Schilder, M. T., Nijhuis, E. H., Te Beest, D. E., Bloem, J., Visser, J. H. M., van Os, G., Brolsma, K., de Boer, W., & Postma, J. (2021). Chitin- and Keratin-Rich Soil Amendments Suppress Rhizoctonia solani Disease via Changes to the Soil Microbial Community. Applied and Environmental Microbiology, 87(11). https://doi.org/10.1128/AEM.00318-21Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J-M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C.,... Drezen, J-M. (2021). Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology, 4(1), 104. https://doi.org/10.1038/s42003-020-01623-8Eichhorn, G., Boom, M. P., van der Jeugd, H. P., Mulder, A., Wikelski, M., Maloney, S. K., & Goh, G. H. (2021). Circadian and Seasonal Patterns of Body Temperature in Arctic Migratory and Temperate Non-migratory Geese. Frontiers in Ecology and Evolution, 9, 425. https://doi.org/10.3389/fevo.2021.699917de Bruijn, D. S., ter Braak, P. M., Van de Waal, D. B., Olthuis, W., & van den Berg, A. (2021). Coccolithophore calcification studied by single-cell impedance cytometry: Towards single-cell PIC:POC measurements. Biosensors and Bioelectronics, 173, [112808]. https://doi.org/10.1016/j.bios.2020.112808Verstijnen, Y. J. M., Maliaka, V., Catsadorakis, G., Lürling, M., & Smolders, A. J. P. (2021). Colonial nesting waterbirds as vectors of nutrients to Lake Lesser Prespa (Greece). Inland Waters, 11(2), 191-207. https://doi.org/10.1080/20442041.2020.1869491Taparia, T., Hendrix, E., Hendriks, M., Krijger, M., De Boer, W., & Van der Wolf, J. (2021). Comparative studies on the disease prevalence and population dynamics of ginger blotch and brown blotch pathogens of button mushrooms. Plant Disease, 105(3), 542-547. https://doi.org/10.1094/PDIS-06-20-1260-RECosta, O. Y. A., Meima-Franke, M., & Bodelier, P. (2021). Complete and Draft Genome Sequences of Aerobic Methanotrophs Isolated from a Riparian Wetland. Microbiology Resource Announcements, 10(9), [e01438-20]. https://doi.org/10.1128/MRA.01438-20Habtemariam, H., Kifle, D., Leta, S., Beekman, W., & Lürling, M. (2021). Cyanotoxins in drinking water supply reservoir (Legedadi, Central Ethiopia): implications for public health safety. SN Applied Sciences, 3(3), [328]. https://doi.org/10.1007/s42452-021-04313-0Liu, X., Hannula, S. E., Li, X., Hundscheid, M. P. J., Gunnewiek, P. J. A. K., Clocchiatti, A., Ding, W., & Boer, W. D. (2021). Decomposing cover crops modify root-associated microbiome composition and disease tolerance of cash crop seedlings. Soil Biology and Biochemistry, 160, [108343]. https://doi.org/10.1016/j.soilbio.2021.108343Zardi, G. I., Nicastro, K. R., McQuaid, C. D., de Jager, M., Van de Koppel, J., & Seuront, L. (2021). Density-dependent and species-specific effects on self-organization modulate the resistance of mussel bed ecosystems to hydrodyn. American Naturalist, 197(5), 615-623. https://doi.org/10.1086/713738Song, C., Jin, K., & Raaijmakers, J. M. (2021). Designing a home for beneficial plant microbiomes. Current Opinion in Plant Biology, 62, [102025]. https://doi.org/10.1016/j.pbi.2021.102025Friman, J., Pineda, A., Gershenzon, J., Dicke, M., & van Loon, J. J. A. (2021). Differential effects of the rhizobacterium Pseudomonas simiae on above- and belowground chewing insect herbivores. Journal of Applied Entomology, 145(3), 250-260. https://doi.org/10.1111/jen.12842Kirchner, N., Cano-Prieto, C., Schulz-Finke, A., Gütschow, M., Ortlieb, N., Moschny, J., Niedermeyer, T., Horak, J., Lämmerhofer, M., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2021). Discovery of Thanafactin A, a Linear Proline-containing Octa-Lipopeptide from Pseudomonas sp. SH-C52, Motivated by Genome Mining. Journal of Natural Products, 84(1), 101–109. https://doi.org/10.1021/acs.jnatprod.0c01174van Dijk, H., Kaupper, T., Bothe, C., Lee, H. J., Bodelier, P., Horn, M. A., & Ho, A. (2021). Discrepancy in exchangeable and soluble ammonium-induced effects on aerobic methane oxidation: a microcosm study of a paddy soil. Biology and Fertility of Soils, 57, 873–880. https://doi.org/10.1007/s00374-021-01579-9Koorem, K., Wilschut, R., Weser, C., & van der Putten, W. H. (2021). Disentangling nematode and arbuscular mycorrhizal fungal community effect on the growth of range-expanding Centaurea stoebe in original and new range soil. Plant and Soil, in press. https://doi.org/10.1007/s11104-021-05020-wOssowicki, A., Raaijmakers, J. M., & Garbeva, P. (Accepted/In press). Disentangling soil microbiome functions by perturbation. Environmental Microbiology Reports, in press. https://doi.org/10.1111/1758-2229.12989Tracanna, V., Ossowicki, A., Petrus, M. L. C., Overduin, S., Terlouw, B. R., Lund, G., Robinson, S. L., Warris, S., Schijlen, E. G. W. M., van Wezel, G. P., Raaijmakers, J. M., Garbeva, P., & Medema, M. H. (2021). Dissecting disease-suppressive rhizosphere microbiomes by functional amplicon sequencing and 10X metagenomics. mSystems, 6(3), [e01116-20]. https://doi.org/10.1128/mSystems.01116-20Musters, C. J. M., Evans, T. R., Wiggers, J. M. R., 't-Zelfde, M. V., & Snoo, G. R. D. (2021). Distribution of flying insects across landscapes with intensive agriculture in temperate areas. Ecological Indicators, 129, [107889]. https://doi.org/10.1016/j.ecolind.2021.107889Kornijów, R., Dukowska, M., Leszczyńska, J., Smith, C., Jeppesen, E., Hansson, L. A., Ketola, M., Irvine, K., Nõges, T., Sahuquillo, M., Miracle, M. R., Gross, E., Kairesalo, T., van Donk, E., de Eyto, E., García-Criado, F., Grzybkowska, M., & Moss, B. (2021). Distribution patterns of epiphytic reed-associated macroinvertebrate communities across European shallow lakes. Science of the Total Environment, 760, [144117]. https://doi.org/10.1016/j.scitotenv.2020.144117Sun, R. L., Jing, Y. L., de Boer, W., Guo, R-J., & Li, S. D. (2021). Dominant hyphae-associated bacteria of Fusarium oxysporum f. sp. cucumerinum in different cropping systems and insight into their functions. Applied Soil Ecology, 165, [103977]. https://doi.org/10.1016/j.apsoil.2021.103977Cvetkoska, A., Jovanovska, E., Hauffe, T., Donders, T. H., Levkov, Z., Waal, D. B. V. D., Reed, J. M., Francke, A., Vogel, H., Wilke, T., Wagner, B., & Wagner-Cremer, F. (2021). Drivers of phytoplankton community structure change with ecosystem ontogeny during the Quaternary. Quaternary Science Reviews, 265, [107046]. https://doi.org/10.1016/j.quascirev.2021.107046Duan, Z., Tan, X., Paerl, H. W., & van de Waal, D. B. (2021). Ecological stoichiometry of functional traits in a colonial harmful cyanobacterium. Limnology and Oceanography, 66(5). https://doi.org/10.1002/lno.11744Schelfhout, S., Wasof, S., Mertens, J., Vanhellemont, M., Demey, A., Haegeman, A., DeCock, E., Moeneclaey, I., Vangansbeke, P., Viaene, N., Baeyen, S., De Sutter, N., Maes, M., van der Putten, W. H., Verheyen, K., & De Schrijver, A. (2021). Effects of bioavailable phosphorus and soil biota on typical Nardus grassland species in competition with fast-growing plant species. Ecological Indicators, 120, [106880]. https://doi.org/10.1016/j.ecolind.2020.106880Borer, E. T., Asik, L., Everett, R. A., Frenken, T., Gonzalez, A. L., Paseka, R. E., Peace, A., Seabloom, E. W., Strauss, A. T., van de Waal, D. B., & White, L. A. (2021). Elements of disease in a changing world: modelling feedbacks between infectious disease and ecosystems. Ecology Letters, 24(1). https://doi.org/10.1111/ele.13617Sepers, B., Erven, J. A., Gawehns - Bruning, F. K. K., Laine, V., & van Oers, K. (2021). Epigenetics and Early Life Stress: Experimental Brood Size Affects DNA Methylation in Great Tits (Parus major). Frontiers in Ecology and Evolution, 9, [609061]. https://doi.org/10.3389/fevo.2021.609061Resch, M. C., Schütz, M., Buchmann, N., Frey, B., Graf, U., van der Putten, W. H., Zimmermann, S., & Risch, A. C. (2021). Evaluating long-term success in grassland restoration: an ecosystem multifunctionality approach. Ecological Applications, 31(3), [e02271]. https://doi.org/10.1002/eap.2271Clocchiatti, A., Hannula, E., Van den Berg, M., Hundscheid, M. P. J., & de Boer, W. (2021). Evaluation of phenolic root exudates as stimulants of saprotrophic fungi in the rhizosphere. Frontiers in Microbiology, 12, [644046]. https://doi.org/10.3389/fmicb.2021.644046Hawkes, C. V., Kjøller, R., Raaijmakers, J. M., Riber, L., Christensen, S., Bjorholm Dahl, A., Cairo Westergaard, J., Nielsen, M., Brown-Guedira, G., & Hestbjerg Hansen, L. (2021). Extension of Plant Phenotypes by the Foliar Microbiome. Annual Review of Plant Biology, 72, 823-846. https://doi.org/10.1146/annurev-arplant-080620-114342Zhou, X., Leite, M. F. A., Zhang, Z., Tian, L., Chang, J., Ma, L., Li, X., van Veen, H., Tian, C., & Kuramae, E. (2021). Facilitation in the soil microbiome does not necessarily lead to niche expansion. Environmental Microbiome, 16, [4]. https://doi.org/10.1186/s40793-021-00373-2Armstrong, M. R., Kramer, L., de Senerpont Domis, L., van Wijk, D., Gsell, A., Mooij, W. M., & Teurlincx, S. (2021). Flipping Lakes: Explaining concepts of catchment-scale water management through a serious game. Limnology and Oceanography: Methods, 19(7), 443-456. https://doi.org/10.1002/lom3.10436Arruda, R. S., Noyma, N. P., de Magalhães, L., Mesquita, M. C. B., de Almeida, É. C., Pinto, E., Lürling, M., & Marinho, M. M. (2021). ‘Floc and Sink’ Technique Removes Cyanobacteria and Microcystins from Tropical Reservoir Water. Toxins, 13(6), [405]. https://doi.org/10.3390/toxins13060405Villar, N., Paz, C., Zipparro, V., Nazareth, S., Bulascoschi, L., Bakker, E. S., & Galetti, M. (2021). Frugivory underpins the nitrogen cycle. Functional Ecology, 35(2), 357-368. https://doi.org/10.1111/1365-2435.13707Geisen, S., ten Hooven, F. C., Kostenko, O., Snoek, L. B., & van der Putten, W. H. (2021). Fungal root endophytes influence plants in a species-specific manner that depends on plant's growth stage. Journal of Ecology, 109(4), 1618-1632. https://doi.org/10.1111/1365-2745.13584McDaniel, E. A., Wever, R., Oyserman, B. O., Noguera, D. R., & McMahon, K. D. (2021). Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal. Microbiology Resource Announcements, 10(18), [e00244-21]. https://doi.org/10.1128/MRA.00244-21Phillips, H. R. P., Bach, E. M., Bartz, M. L. C., Bennett, J. M., Beugnon, R., Briones, M. J. I., Brown, G. G., Ferlian, O., Gongalsky, K. B., Guerra, C. A., König-Ries, B., Krebs, J. J., Orgiazzi, A., Ramirez, K. S., Russell, D. J., Schwarz, B., Wall, D. H., Brose, U., Decaëns, T.,... Eisenhauer, N. (2021). Global data on earthworm abundance, biomass, diversity and corresponding environmental properties. Scientific data, 8(1), [136]. https://doi.org/10.1038/s41597-021-00912-zReinhart, K. O., Bauer, J. T., McCarthy-Neumann, S., MacDougall, A. S., Hierro, J. L., Chiuffo, M. C., Mangan, S. A., Heinze, J., Bergmann, J., Joshi, J., Duncan, R. P., Diez, J. M., Kardol, P., Rutten, G., Fischer, M., van der Putten, W. H., Bezemer, T. M., & Klironomos, J. (2021). Globally, plant-soil feedbacks are weak predictors of plant abundance. Ecology and Evolution, 11(4), 1756-1768. https://doi.org/10.1002/ece3.7167Lürling, M. (2021). Grazing resistance in phytoplankton. Hydrobiologia, 848(1), 237-249. https://doi.org/10.1007/s10750-020-04370-3Cockburn, A., & van de Pol, M. (2021). hiphop: improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecular Ecology Resources. https://doi.org/10.1111/1755‐0998.13389De Long, J., Heinen, R., Jongen, R., Hannula, E., Huberty, M. D., Kielak, A. M., Steinauer, K., & Bezemer, T. M. (2021). How plant-soil feedbacks influence the next generation of plants. Ecological Research, 36(1), 32-44. https://doi.org/10.1111/1440-1703.12165Clocchiatti, A., Hannula, S. E., Rizaludin, M. S., Hundscheid, M. P. J., klein Gunnewiek, P. J. A., Schilder, M. T., Postma, J., & de Boer, W. (2021). Impact of Cellulose-Rich Organic Soil Amendments on Growth Dynamics and Pathogenicity of Rhizoctonia solani. Microorganisms, 9(6), [1285]. https://doi.org/10.3390/microorganisms9061285Jeon, J-S., Carreno-Quintero, N., van Eekelen, H. D. L. M., De Vos, R. C. H., Raaijmakers, J. M., & Etalo, D. W. (2021). Impact of root-associated strains of three Paraburkholderia species on primary and secondary metabolism of Brassica oleracea. Scientific Reports, 11, [2781]. https://doi.org/10.1038/s41598-021-82238-9Hannula, E., Di Lonardo, D. P., Christensen, B. T., Crotty, F. V., Elsen, A., Erp, P. J. V., Hansen, E. M., Rubæk, G. H., Tits, M., Tóth, Z., & Termorshuizen, A. J. (2021). Inconsistent effects of agricultural practices on soil fungal communities across twelve European long-term experiments. European Journal of Soil Science, 72(4), 1902-1923. [13090]. https://doi.org/10.1111/ejss.13090Christensen, S., Hol, W. H. G., Kurm, V., & Vestergård, M. (2021). Increased likelihood of high nitrous oxide (N2o) exchange in soils at reduced microbial diversity. Sustainability, 13(4), [1685]. https://doi.org/10.3390/su13041685Ziar, H., Prudon, B., Lin, F-Y., Roeffen, B., Heijkoop, D., Stark, T., Teurlincx, S., de Senerpont Domis, L., Garcia Goma, E., Garro Extebarria, J., Narvaez Alavez, I., van Tilborg, D., van Laar, H., Santbergen, R., & Isabella, O. (2021). Innovative Floating Bifacial Photovoltaic Solutions for Inland Water Areas. Progress in Photovoltaics : Research and Applications, 29(7), 725-743. https://doi.org/10.1002/pip.3367Hermsen, D., Van de Waal, D. B., Declerck, S. A. J., Verreth, J. A. J., & Verdegem, M. C. J. (2021). In situ fatty acid production supports shrimp yields in diets lacking fish oil and fishmeal. Aquaculture Nutrition, 27(2), 506-518. https://doi.org/10.1111/anu.13202Tomotani, B. M., Gienapp, P., de la Hera, I., Terpstra, M., Pulido, F., & Visser, M. E. (2021). Integrating Causal and Evolutionary Analysis of Life-History Evolution: Arrival Date in a Long-Distant Migrant. Frontiers in Ecology and Evolution, 9, [630823]. https://doi.org/10.3389/fevo.2021.630823Qu, L., Wang, M., & Biere, A. (2021). Interactive effects of Mycorrhizae, Soil Phosphorus and Light on Growth and Induction and Priming of Defense in Plantago lanceolata. Frontiers in Plant Science, 12, [647372]. https://doi.org/10.3389/fpls.2021.647372Maliaka, V., Lürling, M., Fritz, C., Verstijnen, Y. J. M., Faassen, E. J., van Oosterhout, F., & Smolders, A. J. P. (2021). Interannual and Spatial Variability of Cyanotoxins in the Prespa Lake Area, Greece. Water, 13(3). https://doi.org/10.3390/w13030357Chen, J., Feng, K., Hannula, S. E., Kuzyakov, Y., Li, Y., & Xu, H. (2021). Interkingdom plant-microbial ecological networks under selective and clear cutting of tropical rainforest. Forest Ecology and Management, 491, [119182]. https://doi.org/10.1016/j.foreco.2021.119182Brandenburg, K. M., Krock, B., Klip, H. C. L., Sluijs, A., Garbeva, P., & Van de Waal, D. B. (2021). Intraspecific variation in multiple trait responses of Alexandrium ostenfeldii towards elevated pCO2. Harmful Algae, 101, [101970]. https://doi.org/10.1016/j.hal.2020.101970Zhang, W., & Declerck, S. A. J. (Accepted/In press). Intrinsic postzygotic barriers constrain cross-fertilisation between two hybridising sibling rotifer species of the Brachionus calyciflorus species complex. Freshwater Biology, In press. https://doi.org/10.1111/fwb.13727Zhang, W., & Declerck, S. A. J. (2021). Intrinsic postzygotic barriers constrain cross-fertilization between two hybridizing sibling rotifer species of the Brachionus calyciflorus species complex. Freshwater Biology, in press. https://doi.org/10.1111/fwb.13727Thakur, M. P., Künne, T., Unsicker, S. B., Biere, A., Ferlian, O., Pruschitzki, U., Thouvenot, L., Türke, M., & Eisenhauer, N. (2021). Invasive earthworms reduce chemical defense and increase herbivory and pathogen infection in native trees. Journal of Ecology, 109(2), 763-775. https://doi.org/10.1111/1365-2745.13504Salvador, R. B., Tomotani, B. M., O’Donnell, K. L., Cavallari, D. C., Tomotani, J. V., Salmon, R. A., & Kasper, J. (2021). Invertebrates in Science Communication: Confronting Scientists’ Practices and the Public’s Expectations. Frontiers in Environmental Science, 9, [606416]. https://doi.org/10.3389/fenvs.2021.606416Chang, M. (2021). Know your limits: Modelling consumer-resource interactions to derive nutrient thresholds for a sustainable Anthropocene (PhD Thesis). Wageningen University. https://doi.org/10.18174/536795Martínez-García, L. B., Korthals, G. W., Brussaard, L., Mainardi, G., & De Deyn, G. B. (2021). Litter quality drives nitrogen release, and agricultural management (organic vs. conventional) drives carbon loss during litter decomposition in agro-ecosystems. Soil Biology and Biochemistry, 153, [108115]. https://doi.org/10.1016/j.soilbio.2020.108115Bahram, M., Netherway, T., Frioux, C., Ferretti, P., Coelho, L. P., Geisen, S., Bork, P., & Hildebrand, F. (2021). Metagenomic assessment of the global diversity and distribution of bacteria and fungi. Environmental Microbiology, 23(1), 316-326. https://doi.org/10.1111/1462-2920.15314Wang, Z., Xu, Z., Chen, Z., Kowalchuk, G. A., Fu, X., & Kuramae, E. (2021). 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