Publications

Theses

Odours from friends and foes: ecological consequences of volatiles from soil-borne fungi on plant growth and defence against herbivores

Thesis

Friday, 16 October, 2020

Bewick's swans in a changing world: Species responses and the need for dynamic nature conservation

Thesis

Tuesday, 8 September, 2020

more theses

Recent scientific publications (2017 - )

For more information, please contact the NIOO library

Haridas, S., Albert, R., Binder, M., Bloem, J., LaButti, K., Salamov, A., Andreopoulos, B., Baker, S. E., Barry, K., Bills, G., Bluhm, B. H., Cannon, C., Castanera, R., Culley, D. E., Daum, C., Ezra, D., González, J. B., Henrissat, B., Kuo, A.,... Grigoriev, I. V. (2020). 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology, 96, 141 - 153. https://doi.org/10.1016/j.simyco.2020.01.003

Kostenko, O., & Bezemer, T. M. (2020). Abiotic and Biotic Soil Legacy Effects of Plant Diversity on Plant Performance. Frontiers in Ecology and Evolution, 8, [fevo.2020.00087]. https://doi.org/10.3389/fevo.2020.00087

Huberty, M. D., Choi, Y. H., Heinen, R., & Bezemer, T. M. (2020). Aboveground plant metabolomic responses to plant-soil feedbacks and herbivory. Journal of Ecology, 108(4), 1703-1712. https://doi.org/10.1111/1365-2745.13394

Bont, Z., Pfander, M., Robert, C. A. M., Huber, M., Poelman, E. H., Raaijmakers, C. E., & Erb, M. (2020). Adapted dandelions trade dispersal for germination upon root herbivore attack. Proceedings of the Royal Society B-Biological Sciences, 287(1921), [2930]. https://doi.org/10.1098/rspb.2019.2930

Li, X., Zhu, H., Geisen, S., Bellard, C., Hu, F., Li, H., Chen, X., & Liu, M. (2020). Agriculture erases climate constraints on soil nematode communities across large spatial scales. Global Change Biology, 26(2), 919-930. https://doi.org/10.1111/gcb.14821

Garbeva, P., & Weisskopf, L. (2020). Airborne medicine - Bacterial volatiles and their influence on plant health: Transley review. New Phytologist, 226(1), 32-43. https://doi.org/10.1111/nph.16282

van Leeuwen, C. H. A., Tella, J. L., & Green, A. J. (2020). Animal-Mediated Dispersal in Understudied Systems: Editorial. Frontiers in Ecology and Evolution, 7, [508]. https://doi.org/10.3389/fevo.2019.00508

Gulati, S., Ballhausen, M-B., Kulkarni, P., Grosch, R., & Garbeva, P. (2020). A non-invasive soil based setup to study tomato root volatiles released by healthy and infected roots. Scientific Reports, 10, [12704]. https://doi.org/10.1038/s41598-020-69468-z

Halfwerk, W., & van Oers, K. (2020). Anthropogenic noise impairs foraging for cryptic prey via cross-sensory interference. Proceedings of the Royal Society B-Biological Sciences, 287(1924), [20192951]. https://doi.org/10.1098/rspb.2019.2951

Nuijten, R., Vriend, S. J. G., Wood, K. A., Haitjema, T., Rees, E. C., Jongejans, E., & Nolet, B. A. (2020). Apparent breeding success drives long-term population dynamics of a migratory swan. Journal of Avian Biology, in press. https://doi.org/10.1111/jav.02574

Dominoni, D. M., Kjellberg Jensen, J., de Jong, M., Visser, M. E., & Spoelstra, K. (2020). Artificial light at night, in interaction with spring temperature, modulates timing of reproduction in a passerine bird. Ecological Applications, 30(3), [e02062]. https://doi.org/10.1002/eap.2062

Barré, K., Spoelstra, K., Bas, Y., Challéat, S., Kiri Ing, R., Azam, C., Zissis, G., Lapostolle, D., Kerbiriou, C., & Le Viol, I. (2020). Artificial light may change flight patterns of bats near bridges along urban waterways. Animal Conservation, in press. https://doi.org/10.1111/acv.12635

Hipsey, M. R., Gal, G., Arhonditsis, G. B., Carey, C. C., Elliott, J. A., Frassl, M. A., Janse, J. H., de Mora, L., & Robson, B. J. (2020). A system of metrics for the assessment and improvement of aquatic ecosystem models. Environmental Modelling and Software, 128. https://doi.org/10.1016/j.envsoft.2020.104697

Gehring, C., Zelarayán, M. C., Luz, R. L., Almeida, R. B., Boddey, R. M., & Leite, M. F. A. (2020). Babassu palm (Attalea speciosa Mart.) super-dominance shapes its surroundings via multiple biotic, soil chemical, and physical interactions and accumulates soil carbon: a case study in eastern Amazonia. Plant and Soil. https://doi.org/10.1007/s11104-020-04580-7

Moretti, L. G., Cruciol, C. A. C., Bossolani, J. W., Momesso, L., Garcia, A., Kuramae, E., & Hungria, M. (2020). Bacterial consortium and microbial metabolites increase grain quality and soybean yield. Journal of Soil Science and Plant Nutrition, in press. https://doi.org/10.1007/s42729-020-00263-5

Su, L., Zhang, L., Qiu, P., Nie, D., Kuramae, E., Shen, B., & Shen, Q. (2020). Bacterial Tomato Pathogen Ralstonia solanacearum Invasion Modulates Rhizosphere Compounds and Facilitates the Cascade Effect of Fungal Pathogen Fusarium solani. Microorganisms, in press. https://doi.org/10.3390/microorganisms8060806

Nuijten, R. (2020). Bewick's swans in a changing world: Species responses and the need for dynamic nature conservation (PhD Thesis). https://hdl.handle.net/11245.1/07de5b40-d7a5-4259-83e8-af77f02c213c

Buzhdygan, O. Y., Meyer, S. T., Weisser, W. W., Eisenhauer, N., Ebeling, A., Borrett, S. R., Buchmann, N., Cortois, R., De Deyn, G. B., de Kroon, H., Gleixner, G., Hertzog, L. R., Hines, J., Lange, M., Mommer, L., Ravenek, J., Scherber, C., Scherer-Lorenzen, M., Scheu, S.,... Petermann, J. S. (2020). Biodiversity increases multitrophic energy use efficiency, flow and storage in grasslands. Nature Ecology and Evolution, 4(3), 393-405. https://doi.org/10.1038/s41559-020-1123-8

Nuijten, R., Prins, E. F., Lammers, J., Mager, C., & Nolet, B. A. (2020). Calibrating tri-axial accelerometers for remote behavioural observations in Bewick's swans. Journal of Zoo and Aquarium Research, 8(4), 231-238. https://doi.org/10.19227/jzar.v8i4.522

Orama, N. J., van Groeningen, J. W., Bodelier, P., Brenzinger, K., Cornelissen, J. H. C., De Deyn, G., & Abalos, D. (2020). Can flooding-induced greenhouse gas emissions be mitigated by trait-based plant species choice? Science of the Total Environment, 727(20 July), [138476]. https://doi.org/10.1016/j.scitotenv.2020.138476

Costa, N., Andreotti, M., Costa Crusciol, C. A., Magelhaes Pariz, C., Bossolani, J. W., de Castilhos, A. M., Costa do Nascimento, C. A., da Rocha Lima, C. G., dos Santos Batista Bonini, C., & Kuramae, E. (2020). Can Palisade and Guinea Grass Sowing Time in Intercropping Systems Affect Soybean Yield and Soil Chemical Properties? Frontiers In Sustainable Food Systems, 4, [81]. https://doi.org/10.3389/fsufs.2020.00081

Nuijten, R., & Nolet, B. A. (2020). Chains as strong as the weakest link: remote assessment of aquatic resource use on spring migration by Bewick's Swans. Avian Conservation and Ecology, 15(2), [14]. https://doi.org/10.5751/ACE-01682-150214

Kleijn, D., Biesmeijer, K. J. C., Klaassen, R. H. G., Oerlemans, N., Raemakers, I., Scheper, J., & Vet, L. E. M. (2020). Chapter Four - Integrating biodiversity conservation in wider landscape management: Necessity, implementation and evaluation. In D. A. Bohan, & A. J. Vanbergen [Eds.], The Future of Agricultural Landscapes, Part I (Vol. 63, pp. 127-159). Academic Press. https://doi.org/10.1016/bs.aecr.2020.08.004

Thakur, M. P. (2020). Climate warming and trophic mismatches in terrestrial ecosystems: the green-brown imbalance hypothesis. Biology Letters, 16(2), [20190770]. https://doi.org/10.1098/rsbl.2019.0770

de Bruijn, D. S., ter Braak, P. M., Van de Waal, D. B., Olthuis, W., & van den Berg, A. (2020). Coccolithophore calcification studied by single-cell impedance cytometry: Towards single-cell PIC:POC measurements. Biosensors and Bioelectronics, in press. https://doi.org/10.1016/j.bios.2020.112808

Koorem, K., Snoek, B., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K., Weser, C., Wilschut, R., & van der Putten, W. H. (2020). Community-level interactions between plants and soil biota during range expansion. Journal of Ecology, Online. https://doi.org/10.1111/1365-2745.13409

Ramakers, J. J. C., Gienapp, P., & Visser, M. E. (2020). Comparing two measures of phenological synchrony in a predator–prey interaction: Simpler works better. Journal of Animal Ecology, 89(3), 745-756. https://doi.org/10.1111/1365-2656.13143

Nuijten, R., Wood, K. A., Haitjema, T., Rees, E. C., & Nolet, B. A. (2020). Concurrent shifts in wintering distribution and phenology in migratory swans: individual and generational effects. Global Change Biology. https://doi.org/10.1111/gcb.15151

Pineda, A. M., Kaplan, I., Hannula, E., Ghanem, W., & Bezemer, T. M. (2020). Conditioning the soil microbiome through plant-soil feedbacks suppresses an aboveground insect pest. New Phytologist, 226(2), 595-608. https://doi.org/10.1111/nph.16385

Contreras-Dávila, C. A., Carrión, V. J., Vonk, V. R., Buisman, C. N. J., & Strik, D. P. B. T. B. (2020). Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation. Water Research, 169, [115215]. https://doi.org/10.1016/j.watres.2019.115215

Nolet, B. A., Schreven, K. H. T., Boom, M. P., & Lameris, T. (2020). Contrasting effects of the onset of spring on reproductive success of Arctic-nesting geese. Auk, 137(1,2), [ukz063]. https://doi.org/10.1093/auk/ukz063

Zheng, Y., Hu, X., Jia, Z., Bodelier, P., Guo, Z., Zhang, Y., Li, F., Li, X., & He, P. (2020). Co-occurrence patterns among prokaryotes across an age gradient in pit mud of Chinese strong-flavor liquor. Canadian Journal of Microbiology, Online. https://doi.org/10.1139/cjm-2020-0012

Costa, O. Y. A., De Hollander, M., Pijl, A., Liu, B., & Kuramae, E. (2020). Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer. Microbiome, in press, [76]. https://doi.org/10.1186/s40168-020-00836-7

van der Kolk, H., Krijgsveld, K. L., Linssen, H., Diertens, R. J., Dolman, D. D., Jans, M., Frauendorf, M., Ens, B. J., & Van de Pol, M. (2020). Cumulative energetic costs of military aircraft, recreational and natural disturbance in roosting shorebirds. Animal Conservation, 23(4), 359-372. https://doi.org/10.1111/acv.12546

Drost, S. M., Rutgers, M., Wouterse, M., De Boer, W., & Bodelier, P. (2020). Decomposition of mixtures of cover crop residues increases microbial functional diversity. Geoderma, 361, [114060]. https://doi.org/10.1016/j.geoderma.2019.114060

Wilke, T., Hauffe, T., Jovanovska, E., Cvetkoska, A., Donders, T., Ekschmitt, K., Francke, A., Lacey, J. H., Levkov, Z., Marshall, C. R., Neubauer, T. A., Silvestro, D., Stelbrink, B., Vogel, H., Albrecht, C., Holtvoeth, J., Krastel, S., Leicher, N., Leng, M. J.,... Wagner, B. (2020). Deep drilling reveals massive shifts in evolutionary dynamics after formation of ancient ecosystem. Science advances, 6(40), [eabb2943]. https://doi.org/10.1126/sciadv.abb2943

Petruzzella, A., van Leeuwen, C. H. A., van Donk, E., & Bakker, E. S. (2020). Direct and indirect effects of native plants and herbivores on biotic resistance to alien aquatic plant invasions. Journal of Ecology, Online. https://doi.org/10.1111/1365-2745.13380

Masteling, R., Voorhoeve, L., Ijsselmuiden, J., Dini-Andreote, F., De Boer, W., & Raaijmakers, J. M. (2020). DiSCount: computer vision for automated quantification of Striga seed germination. Plant Methods, 16(60). https://doi.org/10.1186/s13007-020-00602-8

Paseka, R., White, L., Van de Waal, D., Strauss, A., González, A., Everett, R., Peace, A., Seabloom, E. W., Frenken, T., & Borer, E. T. (2020). Disease-mediated ecosystem services: Pathogens, plants, and people. Trends in Ecology and Evolution, in press. https://doi.org/10.1016/j.tree.2020.04.003

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., van Kleunen, M., van der Putten, W. H., Vilà, M., & Bacher, S. (2020). Distinct Biogeographic Phenomena Require a Specific Terminology: A Reply to Wilson and Sagoff: Letter. BioScience, 70(2), 112-114. https://doi.org/10.1093/biosci/biz161

van Langevelde, F., Comor, V., de Bie, S., Prins, H. H. T., & Thakur, M. P. (2020). Disturbance regulates the density–body-mass relationship of soil fauna. Ecological Applications, 30(1), [e02019]. https://doi.org/10.1002/eap.2019

Zhang, L., Dumont, M. G., Bodelier, P. L. E., Adams, J. M., He, D., & Chu, H. (2020). DNA stable-isotope probing highlights the effects of temperature on functionally active methanotrophs in natural wetlands. Soil Biology & Biochemistry, 149, [107954]. https://doi.org/10.1016/j.soilbio.2020.107954

Kirchner, N., Cano-Prieto, C., van der Voort, M., Raaijmakers, J. M., & Gross, H. (2020). Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with Pseudomonas sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9. https://doi.org/10.1128/MRA.00304-20

Lourenço, K. S., Suleiman, A. K. A., Pijl, A., Cantarella, H., & Kuramae, E. (2020). Dynamics and resilience of soil mycobiome under multiple organic and inorganic pulse disturbances. Science of the Total Environment, 733(1 september), [139173]. https://doi.org/10.1016/j.scitotenv.2020.139173

Costa, O. Y. A., Pijl, A., & Kuramae, E. (2020). Dynamics of active potential bacterial and fungal interactions in the assimilation of acidobacterial EPS in soil. Soil Biology & Biochemistry, 148. https://doi.org/10.1016/j.soilbio.2020.107916

Costa, O. Y. A. (2020). Ecological functions and environmental fate of exopolymers of Acidobacteria (PhD Thesis). http://hdl.handle.net/1887/123274

Davidson, S. C., Bohrer, G., Gurarie, E., LaPoint, S., Mahoney, P. J., Boelman, N. T., Eitel, J. U. H., Prugh, L. R., Vierling, L. A., Jennewein, J., Grier, E., Couriot, O., Kelly, A. P., Meddens, A. J. H., Oliver, R. Y., Kays, R., Wikelski, M., Aarvak, T., Ackerman, J. T.,... Hebblewhite, M. (2020). Ecological insights from three decades of animal movement tracking across a changing Arctic. Science, 370(6517), 712-715. https://doi.org/10.1126/science.abb7080

van Bergeijk, D. A., Terlouw, B. R., Medema, M. H., & van Wezel, G. P. (2020). Ecology and genomics of Actinobacteria: new concepts for natural product discovery. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-020-0379-y

Zhang, P., van Leeuwen, C. H. A., Bogers, D., Poelman, M., Xu, J., & Bakker, E. S. (2020). Ectothermic omnivores increase herbivory in response to rising temperature. Oikos, Online. https://doi.org/10.1111/oik.07082

Heinze, J., Bezemer, T. M., & Joshi, J. (2020). Editorial: The Next Step: Disentangling the Role of Plant-Soil Feedbacks in Plant Performance and Species Coexistence Under Natural Conditions. Frontiers in Ecology and Evolution, [00231]. https://doi.org/10.3389/fevo.2020.00231

Alderliesten, J. B., Duxbury, S. J. N., Zwart, M. P., de Visser, J. A. G. M., Stegeman, A., & Fischer, E. A. J. (2020). Effect of donor-recipient relatedness on the plasmid conjugation frequency: a meta-analysis. BMC Microbiology, 20(1). https://doi.org/10.1186/s12866-020-01825-4

Di Lonardo, D. P., van der Wal, A., Harkes, P., & de Boer, W. (2020). Effect of nitrogen on fungal growth efficiency. Plant Biosystems. https://doi.org/10.1101/2020.01.19.911727, https://doi.org/10.1080/11263504.2020.1779849

Wang, C., Fei, M., Meng, L., Harvey, J. A., & Li, B. (2020). Effects of elevated CO2 and temperature on survival and wing dimorphism of two species of rice planthoppers (Hemiptera: Delphacidae) under interaction. Pest Management Science, Online. https://doi.org/10.1002/ps.5747

Moretti, L. G., Crusciol, C. A. C., Kuramae, E., Bossolani, J. W., Moreira, A., Costa, N. R., Alves, C. J., Pascoaloto, I. M., Rondina, A. B. L., & Hungria, M. (2020). Effects of growth-promoting bacteria on soybean root activity, plant development and yield. Agronomy Journal, 112(1), 418-428. https://doi.org/10.1002/agj2.20010

Maliaka, V., Verstijnen, Y. J. M., Faassen, E. J., Smolders, A. J. P., & Lürling, M. (2020). Effects of guanotrophication and warming on the abundance of green algae, cyanobacteria and microcystins in Lake Lesser Prespa, Greece. PLoS One, 15(3), e0229148. https://doi.org/10.1371/journal.pone.0229148

Brandenburg, K. M., Siebers, L., Keuskamp, J., Jephcott, T. G., & Van de Waal, D. (2020). Effects of Nutrient Limitation on the Synthesis of N-Rich Phytoplankton Toxins: A Meta-Analysis. Toxins, 4(12). https://doi.org/10.3390/toxins12040221

Qi, Y., Ossowicki, A., Yang, X., Huerta Lwanga, E., Dini-Andreote, F., Geissen, V., & Garbeva, P. (2020). Effects of plastic mulch film residues on wheat rhizosphere and soil properties. Journal of Hazardous Materials, 387, [121711]. https://doi.org/10.1016/j.jhazmat.2019.121711

Heinen, R., Steinauer, K., De Long, J., Jongen, R., Biere, A., Harvey, J. A., & Bezemer, T. M. (2020). Exogenous application of plant hormones in the field alters aboveground plant–insect responses and belowground nutrient availability, but does not lead to differences in plant–soil feedbacks. Arthropod-Plant Interactions, 14, 559-570. https://doi.org/10.1007/s11829-020-09775-4

van Grunsven, R. H. A., van Deijk, J. R., Donners, M., Berendse, F., Visser, M. E., Veenendaal, E., & Spoelstra, K. (2020). Experimental light at night has a negative long-term impact on macro-moth populations. Current Biology, 30(12), R694-R695. https://doi.org/10.1016/j.cub.2020.04.083

Brouwer, L., & Cockburn, A. (2020). Experimental vacancies do not induce settlement despite habitat saturation in a cooperative breeder. Biology Letters, 16. https://doi.org/10.1098/rsbl.2019.0757

Cusumano, A., Harvey, J. A., Bourne, M. E., Poelman, E. H., & de Boer, J. G. (2020). Exploiting chemical ecology to manage hyperparasitoids in biological control of arthropod pests. Pest Management Science, 76(2), 432-443. https://doi.org/10.1002/ps.5679

Chang, M., Teurlincx, S., Janse, J. H., Paerl, H. W., Mooij, W. M., & Janssen, A. B. G. (2020). Exploring How Cyanobacterial Traits Affect Nutrient Loading Thresholds in Shallow Lakes: A Modelling Approach. Water, 12(9), [2467]. https://doi.org/10.3390/w12092467

Bircher, N., van Oers, K., Hinde, C. A., & Naguib, M. (2020). Extraterritorial forays by great tits are associated with dawn song in unexpected ways. Behavioral Ecology, 31(4), 873-883. https://doi.org/10.1093/beheco/araa040

Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., Gharbi, K., Hunt, J., Kumar, S., Langan, E., Liu, X., Rayner, J. G., Ritchie, M. G., Snoek, B. L., Trivedi, U., & Bailey, N. W. (2020). Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild: Letter. Evolution Letters, Online, 19-33. https://doi.org/10.1002/evl3.148

Reyershove, L., Bulteel, J., Liu, J., Souffreau, C., Brans, K. I., Engelen, J. M. T., De Meester, L., Hendrickx, F., Muylaert, K., Declerck, S. A. J., & Decaestecker, E. (2020). Food nutrient availability affects epibiont prevalence and richness in natural Daphnia populations. Limnology and Oceanography, in press. https://doi.org/10.1002/lno.11469

Suleiman, A. K. A., Lourenço, K. S., Clark, C., Luz, R. L., Silva, G. H. R., Vet, L. E. M., Cantarella, H., Fernandes, T. V., & Kuramae, E. (2020). From toilet to agriculture: Fertilization with microalgal biomass from wastewater impacts the soil and rhizosphere active microbiomes, greenhouse gas emissions and plant growth. Resources, Conservation and Recycling, 161. https://doi.org/10.1016/j.resconrec.2020.104924

Martín-Vélez, V., Mohring, B., van Leeuwen, C. H. A., Shamoun-Baranes, J., Thaxter, C. B., Baert, J. M., Camphuysen, C. J., & Green, A. J. (2020). Functional connectivity network between terrestrial and aquatic habitats by a generalist waterbird, and implications for biovectoring. Science of the Total Environment, 705, [135886]. https://doi.org/10.1016/j.scitotenv.2019.135886

Moisan, K., Aragón, M., Gort, G., Dicke, M., Cordovez, V., Raaijmakers, J. M., & Lucas-Barbosa, D. (2020). Fungal volatiles influence plant defence against aboveground and belowground herbivory. Functional Ecology, in press. https://doi.org/10.1111/1365-2435.13633

Maaroufi, N. I., & De Long, J. R. (2020). Global Change Impacts on Forest Soils: Linkage Between Soil Biota and Carbon-Nitrogen-Phosphorus Stoichiometry. Frontiers in Forests and Global Change, 3, [2020.00016]. https://doi.org/10.3389/ffgc.2020.00016

Bodelier, P., & Hallin, S. (2020). Grand challenges in Terrestrial Microbiology: moving on from a decade of progress in microbial biogeochemistry: SPECIALTY GRAND CHALLENGE ARTICLE. Frontiers in Microbiology, 11, [981]. https://doi.org/10.3389/fmicb.2020.00981

Li, Y., Veen, G. F. C., Hol, W. H. G., Vandenbrande, S., Hannula, S. E., ten Hooven, F. C., Li, Q., Liang, W., & Bezemer, T. M. (2020). ‘Home’ and ‘away’ litter decomposition depends on the size fractions of the soil biotic community. Soil Biology & Biochemistry, 144. https://doi.org/10.1016/j.soilbio.2020.107783

van Neerbos, F. A. C., de Boer, J. G., Salis, L., Tollenaar, W., Kos, M., Vet, L. E. M., & Harvey, J. A. (2020). Honeydew composition and its effect on life-history parameters of hyperparasitoids. Ecological Entomology, 45(2), 278-289. https://doi.org/10.1111/een.12799

Norte, A. C., Margos, G., Becker, N. S., Ramos, J. A., Nuncio, M. S., Fingerle, V., Araujo, P. M., Adamik, P., Alivizatos, H., Barba, E., Barrientos, R., Cauchard, L., Csorgo, T., Diakou, A., Dingemanse, N. J., Doligez, B., Dubiec, A., Eeva, T., Flaisz, B.,... de Carvalho, I. L. (2020). Host dispersal shapes the population structure of a tick-borne bacterial pathogen. Molecular Ecology, 29(3), [485-501]. https://doi.org/10.1111/mec.15336

De Long, J., Heinen, R., Jongen, R., Hannula, E., Huberty, M. D., Kielak, A. M., Steinauer, K., & Bezemer, T. M. (2020). How plant-soil feedbacks influence the next generation of plants. Ecological Research, in press. https://doi.org/10.1111/1440-1703.12165

Genzel, L., Adan, R., Berns, A., van den Beucken, J., Blokland, A., Boddeke, E. H. W. G. M., Bogers, W. M., Bontrop, R., Bulthuis, R., Bousema, T., Clevers, H., Coenen, T. C. J. J., Dam, A-M. V., Deen, P. M. T., van Dijk, K. W., Eggen, B. J. L., Elgersma, Y., Erdogan, I., Englitz, B.,... Homberg, J. R. (2020). How the COVID-19 pandemic highlights the necessity of animal research. Current Biology, 30(18), R1014-R1018. https://doi.org/10.1016/j.cub.2020.08.030

Lepoutre, A., Faassen, E. J., Zweers, A. J., Lürling, M., Geffard, A., & Lance, E. (2020). How the Neurotoxin β-N-Methylamino-l-Alanine Accumulates in Bivalves: Distribution of the Different Accumulation Fractions among Organs. Toxins, 12(2), [61]. https://doi.org/10.3390/toxins12020061

Costa, O. Y. A., Oguejiofor, C., Zuehlke, D., Barreto, C. C., Wünsche, C., Riedel, K., & Kuramae, E. (2020). Impact of different trace elements on the growth and proteome of two strains of Granulicella, class “Acidobacteriia”. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.01227

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Hammers, M., & Brouwer, L. (2017). Rescue behaviour in a social bird: removal of sticky ‘bird-catcher tree’ seeds by group members. Behaviour, 154(4), 403-411. https://doi.org/10.1163/1568539X-00003428

Spoelstra, K., van Grunsven, R. H. A., Ramakers, J. J. C., Ferguson, K. B., Raap, T., Donners, M., Veenendaal, E. M., & Visser, M. E. (2017). Response of bats to light with different spectra: light-shy and agile bat presence is affected by white and green, but not red light. Proceedings of the Royal Society B-Biological Sciences, 284(1855), [0075]. https://doi.org/10.1098/rspb.2017.0075

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Morgado, L., Preite, V., Oplaat, C., Anava, S., Ferreira de Carvalho, J. L., Rechavi, O., Johannes, F., & Verhoeven, K. J. F. (2017). Small RNAs reflect grandparental environments in apomictic dandelion: Letter. Molecular Biology and Evolution, [msx150]. https://doi.org/10.1093/molbev/msx150

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Lupatini, M., Korthals, G. W., De Hollander, M., Janssens, T. K. S., & Kuramae, E. E. (2017). Soil microbiome is more heterogeneous in organic than in conventional farming system. Frontiers in Microbiology, 7, [2064]. https://doi.org/10.3389/fmicb.2016.02064

Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M., Lujan Soto, R., Bouffaud, M. L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M.,... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, [14349]. https://doi.org/10.1038/ncomms14349

van Gils, S., Tamburini, G., Lorenzo, M., Biere, A., Van Agtmaal, M., Tyc, O., Kos, M., Kleijn, D., & van der Putten, W. H. (2017). Soil pathogen-aphid interactions under differences in soil organic matter and mineral fertilizer. PLoS One, 12(8), [0179695]. https://doi.org/10.1371/journal.pone.0179695

Geisen, S., Mitchell, E. A. D., Wilkinson, D. M., Adl, S., Bonkowski, M., Brown, M. W., Fiore-donno, A. M., Heger, T. J., Jassey, V. E. J., Krashevska, V., Lahr, D. J. G., Marcisz, K., Mulot, M., Payne, R., Singer, D., Anderson, O. R., Charman, D. J., Ekelund, F., Griffiths, B. S.,... Lara, E. (2017). Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology & Biochemistry, 111, 94-103. https://doi.org/10.1016/j.soilbio.2017.04.001

Daebeler, A., Bodelier, P. L. E., Hefting, M. M., Rütting, T., & Laanbroek, H. J. (2017). Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil. Soil Biology & Biochemistry, 107, 114-124. https://doi.org/10.1016/j.soilbio.2016.12.013

Van der Wal, A., Klein Gunnewiek, P. J. A., & De Boer, W. (2017). Soil-wood interactions: influence of decaying coniferous and broadleaf logs on composition of soil fungal communities. Fungal Ecology, 30(December), 132-134. https://doi.org/10.1016/j.funeco.2017.08.006

Janssen, A. B. G., de Jager, V. C. L., Janse, J. H., Kong, X., Liu, S., Ye, W. M., & Mooij, W. M. (2017). Spatial identification of critical nutrient loads of large shallow lakes: Implications for Lake Taihu (China). Water Research, 119, 276-287. https://doi.org/10.1016/j.watres.2017.04.045

Teurlincx, S., Velthuis, M., Seroka, D., Govaert, L., van Donk, E., Van de Waal, D. B., & Declerck, S. A. J. (2017). Species sorting and stoichiometric plasticity control community C:P ratio of first-order aquatic consumers. Ecology Letters, 20(6), 751-760. https://doi.org/10.1111/ele.12773

Pineda, A., Kaplan, I., & Bezemer, T. M. (2017). Steering soil microbiomes to suppress aboveground insect pests. Trends in Plant Science, 22(9), 770-778. https://doi.org/10.1016/j.tplants.2017.07.002

Salles, J. F., Pereira e Silva, M. C., Dini-Andreote, F., Dias, A. C. F., Guillaumaud, N., Poly, F., & van Elsas, J. D. (2017). Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry, 132(1-2), 185-201. https://doi.org/10.1007/s10533-017-0296-y

Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A., & Kuramae, E. E. (2017). Successive DNA extractions improve characterization of soil microbial communities. PeerJ, 5, [e2915]. https://doi.org/10.7717/peerj.2915

Salvador, R. B., Van der Jeugd, H., & Tomotani, B. M. (2017). Taxonomy of the European Pied Flycatcher Ficedula hypoleuca (Aves: Muscicapidae). Zootaxa, 4291(1), 171-182. https://doi.org/10.11646/zootaxa.4291.1.10

Atema, E. (2017). Telomeres, workload and life-history in great tits (PhD Thesis). Rijksuniversiteit Groningen. http://hdl.handle.net/11370/98475bb2-1905-4cd3-b93e-5a75ab7877b3

Jovic, K., Sterken, M. G., Grilli, J., Bevers, R. P. J., Rodriguez, M., Riksen, J. A. G., Allesina, S., Kammenga, J. E., & Snoek, L. B. (2017). Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans. PLoS One, 12(12). https://doi.org/10.1371/journal.pone.0189445

Baugh, A. T., Davidson, S. C., Hau, M., & van Oers, K. (2017). Temporal dynamics of the HPA axis linked to exploratory behavior in a wild European songbird (Parus major). General and Comparative Endocrinology, 250, 104-112. https://doi.org/10.1016/j.ygcen.2017.06.011

Culina, A. (2017). Testing for complex drivers of resource utilisation: A case-study of roost dynamics in bats. Basic and Applied Ecology, 28. https://doi.org/10.1016/j.baae.2017.10.001

Ossowicki, A., Jafra, S., & Garbeva, P. V. (2017). The Antimicrobial Volatile Power of the Rhizospheric Isolate Pseudomonas donghuensis P482. PLoS One, 12(3), [174362]. https://doi.org/10.1371/journal.pone.0174362

Hayes, M. A., Jesse, A., Tabet, B., Reef, R., Keuskamp, J. A., & Lovelock, C. E. (2017). The contrasting effects of nutrient enrichment on growth, biomass allocation and decomposition of plant tissue in coastal wetlands. Plant and Soil, 416(1), 193-204. https://doi.org/10.1007/s11104-017-3206-0

Hudson, L. N., Newbold, T., Contu, S., Hill, S. L. L., Lysenko, I., De Palma, A., Phillips, H. R. P., Alhusseini, T. I., Bedford, F. E., Bennett, D. J., Booth, H., Burton, V. J., Chng, C. W. T., Choimes, A., Correia, D. L. P., Day, J., Echeverría-Londoño, S., Emerson, S. R., Gao, D.,... Purvis, A. (2017). The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecology and Evolution, 7(1), 145-188. https://doi.org/10.1002/ece3.2579

Dejen, E., Anteneh, W., & Vijverberg, J. (2017). The decline of the Lake Tana (Ethiopia) fisheries: Causes and possible solutions. Land Degradation and Development, 28(6), 1842-1851. https://doi.org/10.1002/ldr.2730

Harkes, P., Verhoeven, A., Sterken, M. G., Snoek, L. B., van den Elsen, S. J. J., Mooijman, P. J. W., Quist, C. W., Vervoort, M. T. W., & Helder, J. (2017). The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web. Oikos, 126(12), 1790-1803. https://doi.org/10.1111/oik.04530

Tyc, O., Song, C., Dickschat, J., Vos, M., & Garbeva, P. V. (2017). The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria. Trends in Microbiology, 25(4), 280-292. https://doi.org/10.1016/j.tim.2016.12.002

Tóth, Z., Tuliozi, B., Baldan, D., Hoi, H., & Griggio, M. (2017). The effect of social connections on the discovery of multiple hidden food patches in a bird species. Scientific Reports, 7(1), [816]. https://doi.org/10.1038/s41598-017-00929-8

Miranda, M., Noyma, N., Pacheco, F. S., de Magalhaes, L., Pinto, E., Santos, S., Soares, M. F. A., Huszar, V. L., Lürling, M., & Marinho, M. M. (2017). The efficiency of combined coagulant and ballast to remove harmful cyanobacterial blooms in a tropical shallow system. Harmful Algae, 65, 27-39. https://doi.org/10.1016/j.hal.2017.04.007

Westhoff, S., van Leeuwe, T. M., Qachach, O., Zhang, Z., van Wezel, G. P., & Rozen, D. E. (2017). The evolution of no-cost resistance at sub-MIC concentrations of streptomycin in Streptomyces coelicolor. ISME Journal, 11, 1168-1178. https://doi.org/10.1038/ismej.2016.194

Scheres, B., & van der Putten, W. H. (2017). The plant perceptron connects environment to development. Nature, 543(7645), 337-345. https://doi.org/10.1038/nature22010

Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W., & Garbeva, P. V. (2017). The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators. ISME Journal, 11, 817-820. https://doi.org/10.1038/ismej.2016.144

Simon, J-C., Biere, A., & Sugio, A. (2017). The promises and challenges of research on plant–insect–microbe interactions: Preface. Insect Science, 24(6), 904-909. https://doi.org/10.1111/1744-7917.12536

Laine, V., & van Oers, K. (2017). The Quantitative and Molecular Genetics of Individual Differences in Animal Personality. In J. Vonk, A. Weiss, & S. Kuczaj [Eds.], Personality in Nonhuman Animals (pp. 55-72). Springer. https://doi.org/10.1007/978-3-319-59300-5_4

Desnoues, E., Ferreira de Carvalho, J., Zohner, C. M., & Crowther, T. W. (2017). The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species. Forest Science and Practice, 4(1), 26. https://doi.org/10.1186/s40663-017-0113-z

Wubs, E. R. J. (2017). The steering role of plant-soil interactions in natural community dynamics and nature restoration (PhD Thesis). http://edepot.wur.nl/412967

Sitters, J., Bakker, E. S., Veldhuis, M., Veen, G. F., Venterink, H. O., & Vanni, M. J. (2017). The stoichiometry of nutrient release by terrestrial herbivores and its ecosystem consequences. Frontiers of Earth Science, 5, [feart.2017.00032]. https://doi.org/10.3389/feart.2017.00032

Hau, M., Dominoni, D. M., Casagrande, S., Buck, L., Wagner, G., Hazlerigg, D. G., Greives, T. J., & Hut, R. A. (2017). Timing as a sexually selected trait: the right mate at the right moment. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1734), [0249]. https://doi.org/10.1098/rstb.2016.0249

Åkesson, S., Ilieva, M., Karagicheva, J., Rakhimberdiev, E., Tomotani, B., & Helm, B. (2017). Timing avian long-distance migration: from internal clock mechanisms to global flights. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1734). https://doi.org/10.1098/rstb.2016.0252

Wang, M., Biere, A., van der Putten, W. H., Bezemer, T. M., & Brinkman, E. P. (2017). Timing of simulated aboveground herbivory influences population dynamics of root-feeding nematodes. Plant and Soil, 415(1-2), 215-228. https://doi.org/10.1007/s11104-016-3149-x

Verhofstad, M. J. J. M. (2017). To mow or not to mow - An ecological and societal perspective on submerged aquatic plant growth (PhD Thesis). https://dspace.library.uu.nl/handle/1874/358317

Fernandes, T. V., Suárez-Muñoz, M., Trebuch, L. M., Verbraak, P. J., & Van de Waal, D. B. (2017). Toward an Ecologically Optimized N:P Recovery from Wastewater by Microalgae. Frontiers in Microbiology, 8, 1742. https://doi.org/10.3389/fmicb.2017.01742

Ul Haq, I., Dini-Andreote, F., & van Elsas, J. D. (2017). Transcriptional Responses of the Bacterium Burkholderia terrae BS001 to the Fungal Host Lyophyllum sp Strain Karsten under Soil-Mimicking Conditions. Microbial Ecology, 73(1), 236-252. https://doi.org/10.1007/s00248-016-0885-7

Hol, G. W. H. G., Vestergård, M., Ten Hooven, F. C., Duyts, H., Van de Voorde, T. F. J., & Bezemer, T. M. (2017). Transient negative biochar effects on plant growth are strongest after microbial species loss. Soil Biology & Biochemistry, 115(December), 442-451. https://doi.org/10.1016/j.soilbio.2017.09.016

Hilt, S., Brothers, S., Jeppesen, E., Veraart, A. J., & Kosten, S. (2017). Translating Regime Shifts in Shallow Lakes into Changes in Ecosystem Functions and Services. BioScience, 67(10), 928-936. https://doi.org/10.1093/biosci/bix106

Schilder, J., Van Hardenbroek, M., Bodelier, P. L. E., Kirilova, E. P., Leuenberger, M., Lotter, A. F., & Heiri, O. (2017). Trophic state changes can affect the importance of methane-derived carbon in aquatic food webs. Proceedings of the Royal Society B-Biological Sciences, 284(1857), [278]. https://doi.org/10.1098/rspb.2017.0278

Helm, B., Visser, M. E., Schwartz, W., Kronfeld-Schor, N., Gerkema, M., Piersma, T., & Bloch, G. (2017). Two sides of a coin: ecological and chronobiological perspectives of timing in the wild. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1734), [0246]. https://doi.org/10.1098/rstb.2016.0246

Williams, C. M., Ragland, G. J., Betini, G., Buckley, L. B., Cheviron, Z. A., Donohue, K., Hereford, J., Humphries, M. M., Lisovski, S., Marshall, K. E., Schmidt, P. S., Sheldon, K. S., Varpe, Ø., & Visser, M. E. (2017). Understanding Evolutionary Impacts of Seasonality: An Introduction to the Symposium. Integrative and Comparative Biology, icx122-icx122. https://doi.org/10.1093/icb/icx122

Berney, C., Ciuprina, A., Bender, S., Brodie, J., Edgcomb, V., Kim, E., Rajan, J., Parfrey, L. W., Adl, S., Audic, S., Bass, D., Caron, D. A., Cochrane, G., Czech, L., Dunthorn, M., Geisen, S., Gloeckner, F. O., Mahe, F., Quast, C.,... de Vargas, C. (2017). UniEuk: Time to Speak a Common Language in Protistology! Journal of Eukaryotic Microbiology, 64(3), 407-411. https://doi.org/10.1111/jeu.12414

De Boer, W. (2017). Upscaling of fungal-bacterial interactions: from the lab to the field. Current Opinion in Microbiology, 37, 35-41. https://doi.org/10.1016/j.mib.2017.03.007

Dona, J., Potti, J., De La Hera, I., Blanco, G., Frias, O., & Jovani, R. (2017). Vertical transmission in feather mites: insights into its adaptive value. Ecological Entomology, 42(4), 492-499. https://doi.org/10.1111/een.12408

Schmidt, R. L. (2017). Volatile communication between fungi and bacteria (PhD Thesis). Wageningen University. http://edepot.wur.nl/422840

Velthuis, M., de Senerpont Domis, L. N., Frenken, T., Stephan, S., Kazanjian, G., Aben, R., Hilt, S., Kosten, S., van Donk, E., & Van de Waal, D. B. (2017). Warming advances top-down control and reduces producer biomass in a freshwater plankton community. Ecosphere, 8(1), [e01651]. https://doi.org/10.1002/ecs2.1651

Whigham, D. F., Walker, C. M., Maurer, J., King, R. S., Hauser, W., Baird, S., Keuskamp, J. A., & Neale, P. (2017). Watershed influences on the structure and function of riparian wetlands associated with headwater streams - Kenai Peninsula, Alaska. Science of the Total Environment, 599, 124-134. https://doi.org/10.1016/j.scitotenv.2017.03.290

Ouyang, J. Q., de Jong, M., van Grunsven, R. H. A., Matson, K. D., Haussmann, M. F., Meerlo, P., Visser, M. E., & Spoelstra, K. (2017). What type of rigorous experiments are needed to investigate the impact of artificial light at night on individuals and populations? Response to editor. Global Change Biology, 23(12), e9-e10. https://doi.org/10.1111/gcb.13894

Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Kuesel, K., Rillig, M., Rivett, D., Salles, J., Van der Heijden, M. G. A., Youssef, N., Zhang, X., Wei, Z., & Hol, W. H. G. (2017). Where less may be more: How the rare biosphere pulls ecosystems strings. ISME Journal, 11, 853-862. https://doi.org/10.1038/ismej.2016.174

de Jager, M., Weissing, F. J., & van de Koppel, J. (2017). Why mussels stick together: spatial self-organization affects the evolution of cooperation. Evolutionary Ecology, 31(4), 547-558. https://doi.org/10.1007/s10682-017-9888-1

Cadar, D., Lühken, R., van der Jeugd, H., Garigliany, M., Ziegler, U., Keller, M., Lahoreau, J., Lachmann, L., Becker, N., Kik, M., Oude Munnink, B. B., Bosch, S., Tannich, E., Linden, A., Schmidt, V., Koopmans, M. P., Rijks, J., Desmecht, D., Groschup, M. H.,... Schmidt-Chanasit, J. (2017). Widespread activity of multiple lineages of Usutu virus, western Europe, 2016. Eurosurveillance, 22(4), [30452]. https://doi.org/10.2807/1560-7917.ES.2017.22.4.30452

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Odours from friends and foes: ecological consequences of volatiles from soil-borne fungi on plant growth and defence against herbivores

Bewick's swans in a changing world: Species responses and the need for dynamic nature conservation

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