Department of Microbial Ecology

Micro-organisms form a huge, largely undiscovered potential. A treasure-trove for researchers from the department of Microbial Ecology.

Recent publications (2015 - )

Kuramae, E. E., & de Assis Costa, O. Y. (2019). Acidobacteria. In T. M. Schmidt [Ed.], Encyclopedia of Microbiology (Fourth Edition) (pp. 1-8). Oxford: Academic Press. https://doi.org/10.1016/B978-0-12-809633-8.20780-2
Garbeva, P., & Weisskopf, L. (2019). Airborne medicine - Bacterial volatiles and their influence on plant health. New Phytologist, in press. https://doi.org/10.1111/nph.16282
Silva Costa, F., Figueiredo Sena Macedo, M. W., Araujo, A., Rodrigues, C., Kuramae, E. E., Alcanfor, S.,... Barreto, C. C. (2019). Assessing nickel tolerance of bacteria isolated from serpentine soils. Brazilian Journal of Microbiology, 50(3), 705-713. https://doi.org/10.1007/s42770-019-00111-4
Yao, Z., Du, S., Liang, C., Zhao, Y., Dini-Andreote, F., Wang, K., & Zhang, D. (2019). Bacterial Community Assembly in a Typical Estuarine Marsh with Multiple Environmental Gradients. Applied and Environmental Microbiology, 85(6), [e02602]. https://doi.org/10.1128/AEM.02602-18
Cipriano, M., Suleiman, A. K. A., da Silveira, A. P. D., Carmo, J. B., & Kuramae, E. E. (2019). Bacterial community composition and diversity of two different forms of an organic residue of bioenergy crop. PeerJ, 7, [e6768]. https://doi.org/10.7717/peerj.6768
Janssens, T. K. S., Tyc, O., Besselink, H., De Boer, W., & Garbeva, P. V. (2019). Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine. FEMS Microbiology Letters, [fnz023]. https://doi.org/10.1093/femsle/fnz023
Contreras-Dávila, C. A., Carrión, V. J., Vonk, V. R., Buisman, C. N. J., & Strik, D. P. B. T. B. (2019). Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation. Water Research. https://doi.org/10.1016/j.watres.2019.115215
Harkes, P., Suleiman, A. K. A., van den Elsen, S., De Haan, J., Holterman, M., Kuramae, E., & Helder, J. (2019). Conventional & organic soil management as divergent drivers of resident and active fractions of major soil food web constituents. Scientific Reports, 9, [13521 (2019)]. https://doi.org/10.1038/s41598-019-49854-y
Perez Jaramillo, J. E., De Hollander, M., Ramirez, C. A., Mendes, R., Raaijmakers, J. M., & Carrión, V. J. (2019). Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. Microbiome, 7, [114]. https://doi.org/10.1186/s40168-019-0727-1
Cordovez, V., Dini-Andreote, F., Carrión, V. J., & Raaijmakers, J. M. (2019). Ecology and Evolution of Plant Microbiomes. Annual Review of Microbiology, Online. https://doi.org/10.1146/annurev-micro-090817-062524
Di Lonardo, P., De Boer, W., Zweers, A. J., & Van der Wal, A. (2019). Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter. PLoS One, 15(5), [0216730]. https://doi.org/10.1371/journal.pone.0216730
Yan, Y., Klinkhamer, P. G. L., van Veen, J. A., & Kuramae, E. E. (2019). Environmental filtering: A case of bacterial community assembly in soil. Soil Biology & Biochemistry, 136, [107531]. https://doi.org/10.1016/j.soilbio.2019.107531
van der Waals, M., Plugge, C. M., Meima-Franke, M., de Waard, P., Bodelier, P. L. E., Smidt, H., & Gerritse, J. (2019). Ethyl tert-butyl ether (EtBE) degradation by an algal-bacterial culture obtained from contaminated groundwater. Water Research, 148(January), 314-323. https://doi.org/10.1016/j.watres.2018.10.050
da Silveira, A. P. D., Iório, R. D. P. F. I., Marcos, F. C. C., Fernandes, A. O., De Souza, S. A. C. D., Kuramae, E. E., & Cipriano, M. (2019). Exploitation of new endophytic bacteria and their ability to promote sugarcane growth and nitrogen nutrition. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 112(2), 283-295. https://doi.org/10.1007/s10482-018-1157-y
Wagg, C., Schlaeppi, K., Banerjee, S., Kuramae, E., & Van der Heijden, M. G. A. (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10. https://doi.org/10.1038/s41467-019-12798-y
Masteling, R., Lombard, L., De Boer, W., Raaijmakers, J. M., & Dini-Andreote, F. (2019). Harnessing the microbiome to control plant parasitic weeds. Current Opinion in Microbiology, 49(June), 26-33. https://doi.org/10.1016/j.mib.2019.09.006
in 't Zandt, M. H., Kip, N., Frank, J., Jansen, S., van Veen, J. A., Jetten, M. S. M., & Welte, C. U. (2019). High-level abundance of Methanobacteriales and Syntrophobacterales may help to prevent corrosion of metal sheet piles. Applied and Environmental Microbiology, Online, [AEM.01369-19]. https://doi.org/10.1128/AEM.01369-19
Cassman, N. (2019). Impact of nitrogen fertilization on the soil microbiome and nitrous oxide emissions (PhD Thesis).
Perez Jaramillo, J. E. (2019). Impact of plant domestication on spermosphere and rhizosphere microbiome composition (PhD Thesis).
Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A., & Wakelin, S. A. (2019). Impacts of long-term plant residue management on soil organic matter quality, Pseudomonas community structure and disease suppressiveness. Soil Biology & Biochemistry, online, 396-406. https://doi.org/10.1016/j.soilbio.2019.05.020
Wilschut, R. A., Geisen, S., Martens, H. J., Kostenko, O., De Hollander, M., Ten Hooven, F. C.,... van der Putten, W. H. (2019). Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants. Global Change Biology, 25(8), 2714-2726. https://doi.org/10.1111/gcb.14657
Li, X. G., Jousset, A., De Boer, W., Carriön, V. J., Zhang, T., Wang, X., & Kuramae, E. E. (2019). Legacy of land use history determines reprogramming of plant physiology by soil microbiome. ISME Journal, 13, 738-751. https://doi.org/10.1038/s41396-018-0300-0
Ampt, E. A., van Ruijven, J., Raaijmakers, J. M., Termorshuizen, A. J., & Mommer, L. (2019). Linking ecology and plant pathology to unravel the importance of soil-borne fungal pathogens in species-rich grasslands. European Journal of Plant Pathology, 154(1), 141-156. https://doi.org/10.1007/s10658-018-1573-x
Rosado, P. M., Leite, D. C. A., Duarte, G. A. S., Chaloub, R. M., Jospin, G., Nunes da Rocha, U.,... Peixoto, R. S. (2019). Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation. ISME Journal, 13(4), 921-936. https://doi.org/10.1038/s41396-018-0323-6
Bodelier, P. L. E., Pérez, G., Veraart, A. J., & Krause, S. (2019). Methanotroph Ecology, Environmental distribution and functioning. In E. Y. Lee [Ed.], Methanotrophs: Microbiology Fundamentals and Biotechnological Applications (Microbiology Monographs MICROMONO; Vol. 32). Heidelberg: Springer. https://doi.org/10.1007/978-3-030-23261-0_1
Ghashghavi, M., Belova, S., Bodelier, P. L. E., Dedysh, S., Kox, M. A. R., Speth, D.,... Lüke, C. (2019). Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments. mSphere, 4, [e00631-18]. https://doi.org/10.1128/mSphere.00631-18
Schmidt, R. L., Ulanova, D., Wick, L. Y., Bode, H. B., & Garbeva, P. V. (2019). Microbe-driven chemical ecology – past, present and future. ISME Journal, 13, 2656-2663. https://doi.org/10.1038/s41396-019-0469-x
Lupatini, M., Suleiman, A. K. A., Jacques, R. J. S., Pylro, V. S., van Veen, J. A., Kuramae, E. E., & Roesch, L. F. W. (2019). Moisture is more important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland. Microbial Ecology, 77(2), 460-470. https://doi.org/10.1007/s00248-018-1310-1
Cassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2019). Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil. Environmental Microbiology, 21(4), 1241-1254. https://doi.org/10.1111/1462-2920.14557
Suleiman, A. K. A., Harkes, P., van den Elsen, S., Holterman, M., Korthals, G. W., Helder, J., & Kuramae, E. E. (2019). Organic amendment strengthens interkingdom associations in the soil and rhizosphere of barley (Hordeum vulgare). Science of the Total Environment, [133885]. https://doi.org/10.1016/j.scitotenv.2019.133885
Carrión, V. J., Perez Jaramillo, J. E., Cordovez, V., Tracanna, V., De Hollander, M., Ruiz Buck, D.,... Raaijmakers, J. M. (2019). Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science, 366(6465), 606-612. https://doi.org/10.1126/science.aaw9285
De Boer, W., Li, X. G., Meisner, A., & Garbeva, P. V. (2019). Pathogen suppression by microbial volatile organic compounds in soils. FEMS Microbiology Ecology, 95(8), [fiz105]. https://doi.org/10.1093/femsec/fiz105
de Tender, C., Mesuere, B., van der Jeugt, F., Haegeman, A., Ruttink, T., Vandecasteele, B.,... Kuramae, E. E. (2019). Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome. Scientific Reports, 9. https://doi.org/10.1038/s41598-019-46106-x
Crusciol, C. A. C., Momesso, L., & Nascimento, C. A. C. (2019). Phosphate fertilization on nutritional status and growth of upland rice cultivars. Journal of Plant Nutrition, 42(13), 1516-1528. https://doi.org/10.1080/01904167.2019.1628971
Martín-Sánchez, L., Saurabh Singh, K., Avalos Garcia, M., van Wezel, G. P., Dickschat, J. S., & Garbeva, P. V. (2019). Phylogenomic analyses and distribution of terpene synthases among Streptomyces. Beilstein Journal of Organic Chemistry, 15, 1181–1193. https://doi.org/10.3762/bjoc.15.115
Barel, J. M., Kuyper, T. W., de Boer, W., & De Deyn, G. B. (2019). Plant presence reduces root and shoot litter decomposition rates of crops and wild relatives. Plant and Soil, 438(1), 313-327. https://doi.org/10.1007/s11104-019-03981-7
van der Aart, L. T., Nouioui, I., Kloosterman, A., Igual, J-M., Willemse, J., Goodfellow, M., & van Wezel, G. P. (2019). Polyphasic classification of the gifted natural product producer Streptomyces roseifaciens sp. nov. International Journal of Systematic and Evolutionary Microbiology, 69(4), 899-908.
Mendes, L. W., Gonçalves De Chaves, M., da Fonseca, M. D. C., Mendes, R., Raaijmakers, J. M., & Tsai, S. M. (2019). Resistance breeding of common bean shapes the physiology of the rhizosphere microbiome. Frontiers in Microbiology, In press. https://doi.org/10.3389/fmicb.2019.02252
Maarastawi, S. A., Frindte, K., Bodelier, P. L. E., & Knief, C. (2019). Rice straw serves as additional carbon source for rhizosphere microorganisms and reduces root exudate consumption. Soil Biology & Biochemistry, 135(August), 235-238. https://doi.org/10.1016/j.soilbio.2019.05.007
Chen, S., Waghmode, T. R., Sun, R., Kuramae, E., Hu, C., & Liu, B. (2019). Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization. Microbiome, 7, [136(2019)]. https://doi.org/10.1186/s40168-019-0750-2
Wilschut, R. A., van der Putten, W. H., Garbeva, P. V., Harkes, P., Konings, W., Kulkarni, P.,... Geisen, S. (2019). Root traits and belowground herbivores relate to plant-soil feedback variation among congeners. Nature Communications, 10, [1564(2019)]. https://doi.org/10.1038/s41467-019-09615-x
Gu, X., Wang, Y., Laanbroek, H. J., Xu, X., Song, B., Huo, Y.,... Zhang, L. (2019). Saturated N2O emission rates occur above the nitrogen deposition level predicted for the semi-arid grasslands of Inner Mongolia, China. Geoderma, 341, 18-25. https://doi.org/10.1016/j.geoderma.2019.01.002
Di Lonardo, P. (2019). The microbial side of soil priming effects (PhD Thesis).
Schlemper, T. R. (2019). The rhizomicrobiome of Sorghum : impact on plant growth and stress tolerance (PhD Thesis).
Teurlincx, S., Kuiper, J. J., Hoevenaar, E. C. M., Lurling, M., Brederveld, R. J., Veraart, A. J.,... Domis, L. N. D. S. (2019). Towards restoring urban waters: understanding the main pressures. Current Opinion in Environmental Sustainability, 36, 49-58. https://doi.org/10.1016/j.cosust.2018.10.011
Ho, A., Lee, H. J., Reumer, M. R., Meima-Franke, M., Raaijmakers, C. E., Zweers, A. J.,... Bodelier, P. L. E. (2019). Unexpected role of canonical aerobic methanotrophs in upland agricultural soils. Soil Biology & Biochemistry, 131(April), [1-8]. https://doi.org/10.1016/j.soilbio.2018.12.020
Li, X. G., Garbeva, P., Liu, X., Klein Gunnewiek, P. J. A., Clocchiatti, A., Hundscheid, M. P. J.,... De Boer, W. (Accepted/In press). Volatile-mediated antagonism of soil bacterial communities against fungi. Environmental Microbiology, Online. https://doi.org/10.1111/1462-2920.14808
Moisan, K., Cordovez, V., van de Zande, E. M., Raaijmakers, J. M., Dicke, M., & Lucas-Barbosa, D. (2019). Volatiles of pathogenic and non-pathogenic soil-borne fungi affect plant development and resistance to insects. Oecologia, 190(3), 589-604. https://doi.org/10.1007/s00442-019-04433-w
Barel, J. M., Kuyper, T. W., Paul, J., de Boer, W., Cornelissen, J. H. C., & De Deyn, G. B. (2019). Winter cover crop legacy effects on litter decomposition act through litter quality and microbial community changes. Journal of Applied Ecology, 56(1), 132-143. https://doi.org/10.1111/1365-2664.13261
Kuramae, E. E., Leite, M. F. A., Suleiman, A. K. A., Gough, C. M., Castillo, B., Faller, L.,... Syring, J. (2019). Wood Decay Characteristics and Interspecific Interactions Control Bacterial Community Succession in Populus grandidentata (Bigtooth Aspen). Frontiers in Microbiology, 10, [2019.00979]. https://doi.org/10.3389/fmicb.2019.00979
Stötter, T., Bastviken, D., Bodelier, P. L. E., Hardenbroek, M. V., Rinta, P., Schilder, J.,... Heiri, O. (2018). Abundance and δ13C values of fatty acids in lacustrine surface sediments: Relationships with in-lake methane concentrations. Quaternary Science Reviews, 191, 337 - 347. https://doi.org/10.1016/j.quascirev.2018.04.029
Diaz-Trujillo, C., Chong, P., Stergiopoulos, I., Cordovez, V., Guzman, M., de Wit, P. J. G. M.,... Kema, G. H. J. (2018). A new mechanism for reduced sensitivity to demethylation‐inhibitor fungicides in the fungal banana black Sigatoka pathogen Pseudocercospora fijiensis. Molecular Plant Pathology, 19(6), 1491-1503. https://doi.org/10.1111/mpp.12637
Ibrahim, B., Arkhipova, K., Andeweg, A. C., Posada-Céspedes, S., Enault, F., Gruber, A.,... Marz, M. (2018). Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting. Viruses, 10(5), [256]. https://doi.org/10.3390/v10050256
Mendes, L. W., Mendes, R., Raaijmakers, J. M., & Tsai, S. M. (2018). Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean. ISME Journal, 12, 3038-3042. https://doi.org/10.1038/s41396-018-0234-6
Schulz-Bohm, K., Gerards, S., Hundscheid, M. P. J., Melenhorst, J., De Boer, W., & Garbeva, P. V. (2018). Calling from distance: Attraction of soil bacteria by plant root volatiles. ISME Journal, 12. https://doi.org/10.1038/s41396-017-0035-3
Trusch, F., Loebach, L., Wawra, S., Durward, E., Wuensch, A., Iberahim, N. A.,... van West, P. (2018). Cell entry of a host-targeting protein of oomycetes requires gp96. Nature Communications, 9, [2347]. https://doi.org/10.1038/s41467-018-04796-3
Benevenuto, J., Texeira-Silva, N. S., Kuramae, E. E., Croll, D., & Vitorello, C. B. M. (2018). Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specialization. Frontiers in Microbiology, 9, [660]. https://doi.org/10.3389/fmicb.2018.00660
Siegel-Hertz, K., Edel-Hermann, V., Chapelle, E., Terrat, S., Raaijmakers, J. M., & Steinberg, C. (2018). Comparative microbiome analysis of a Fusarium wilt suppressive soil and a Fusarium wilt conducive soil from the Châteaurenard region. Frontiers in Microbiology, 9, 568. https://doi.org/10.3389/FMICB.2018.00568
Schlemper, T. R., van Veen, J. A., & Kuramae, E. E. (2018). Co-variation of bacterial and fungal communities in different sorghum cultivars and growth stages is soil dependent. Microbial Ecology, 76(1), 205-214. https://doi.org/10.1007/s00248-017-1108-6
De Bruijn, I., & Verhoeven, K. J. F. (2018). Cross-species interference of gene expression: Comment. Nature Communications, 9, [5019]. https://doi.org/10.1038/s41467-018-07353-0
Huerta Lwanga, E., Thapa, B., Yang, X., Gertsen, H., Salánki, T., Geissen, V., & Garbeva, P. V. (2018). Decay of low-density polyethylene by bacteria extracted from earthworm’s guts: a potential for soil restoration. Science of the Total Environment, 624, 753-757. https://doi.org/10.1016/j.scitotenv.2017.12.144
Schmidt, R. L., Durling, M., de Jager, V. C. L., Menezes, R. C., Nordkvist, E., Svatos, A.,... Garbeva, P. V. (2018). Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum. FEMS Microbiology Ecology, 94(6), [fiy078]. https://doi.org/10.1093/femsec/fiy078
Ramirez, K. S., Knight, C. G., de Hollander, M., Brearley, F. Q., Constantinides, B., Cotton, A.,... De Vries, F. T. (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3, 189-196. https://doi.org/10.1038/s41564-017-0062-x
Lourenço, K. S., Dimitrov, M., Pijl, A. S., Soares, J. R., do Carmo, J. B., van Veen, J. A.,... Kuramae, E. E. (2018). Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission. GCB Bioenergy, 10(9), 645-660. https://doi.org/10.1111/gcbb.12519
Meisner, A., Samuel, J., Snoek, B., Ten Hooven, F. C., & van der Putten, W. H. (2018). Drought legacy effects on the composition of soil fungal and prokaryote communities. Frontiers in Microbiology, 9, [294]. https://doi.org/10.3389/fmicb.2018.00294
Schlemper, T. R., Dimitrov, M., Silva Gutierrez, F., van Veen, J. A., Silveira, A. P. D., & Kuramae, E. E. (2018). Effect of Burkholderia tropica and Herbaspirillum frisingense strains on sorghum growth is plant genotype dependent. PeerJ, 6, [e5346]. https://doi.org/10.7717/peerj.5346
Laanbroek, H. J., Zhang, Q., Leite, M. F. A., Verhoeven, J. T. A., & Whigham, D. F. (2018). Effects of Rhizophora mangle leaf litter and seedlings on carbon and nitrogen cycling in salt marshes - potential consequences of climate-induced mangrove migration. Plant and Soil, 426(May 2018), 383-400. https://doi.org/10.1007/s11104-018-3611-z
Dini-Andreote, F., & Raaijmakers, J. M. (2018). Embracing community ecology in plant microbiome research. Trends in Plant Science, 23(6), 467-469. https://doi.org/10.1016/j.tplants.2018.03.013
Krause, S., Meima-Franke, M., Veraart, A. J., Ren, G., Ho, A., & Bodelier, P. L. E. (2018). Environmental legacy contributes to the resilience of methane consumption in a laboratory microcosm system. Scientific Reports, 9, [8862]. https://doi.org/10.1038/s41598-018-27168-9
de Bruijn, I., Liu, Y., Wiegertjes, G. F., & Raaijmakers, J. M. (2018). Exploring fish microbial communities to mitigate emerging diseases in aquaculture. FEMS Microbiology Ecology, 94(1), [fix161]. https://doi.org/10.1093/femsec/fix161
Bäumel, S., Tytgat, H. L. P., Nemec, B., Schmidt, R. L., Chia, L. W., & Smidt, H. (2018). Fifty Percent Human - how art brings us in touch with our microbial cohabitants. Microbial Biotechnology, 11(4). https://doi.org/10.1111/1751-7915.13285
Cassman, N., Lourenço, K. S., Braga do Carmo, J., Cantarella, H., & Kuramae, E. E. (2018). Genome-resolved metagenomics of sugarcane vinasse bacteria. Biotechnology for Biofuels, 11, [48]. https://doi.org/10.1186/s13068-018-1036-9, https://doi.org/10.1186/s13068-018-1254-1
Willemsen, A., Carrasco, J. L., Elena, S. F., & Zwart, M. (2018). Going, going, gone: predicting the fate of genomic insertions in plant RNA viruses. Heredity, 121, 499-509. https://doi.org/10.1038/s41437-018-0086-x
Geesink, P., Tyc, O., Küsel, K., Taubert, M., van de Velde, C., Kumar, S., & Garbeva, P. V. (2018). Growth Promotion and Inhibition Induced by Interactions of Groundwater Bacteria. FEMS Microbiology Ecology, 94(11), [fiy164]. https://doi.org/10.1093/femsec/fiy164
Avalos Garcia, M., van Wezel, G. P., Raaijmakers, J. M., & Garbeva, P. V. (2018). Healthy scents: microbial volatiles as new frontier in antibiotic research? Current Opinion in Microbiology, 45(October), 84-91. https://doi.org/10.1016/j.mib.2018.02.011
van der Aart, L. T., Spijksma, G. K., Harms, A., Vollmer, W., Hankemeier, T., & van Wezel, G. P. (2018). High-Resolution Analysis of the Peptidoglycan Composition in Streptomyces coelicolor. Journal of Bacteriology, 200(20), [e00290-18]. https://doi.org/10.1128/JB.00290-18
Reumer, M., Harnisz, M., Lee, H. J., Reim, A., Grunert, O., Putkinen, A.,... Ho, A. (2018). Impact of peat mining, and restoration on methane turnover potentials and methane-cycling microorganisms in a northern bog. Applied and Environmental Microbiology, 84(3), [e02218-17]. https://doi.org/10.1128/AEM.02218-17
Al-Jubury, A., lu, C., Walter Kania, P., von Gersdorff Jørgensen, L., Liu, Y., De Bruijn, I.,... Buchman, K. (2018). Impact of Pseudomonas H6 surfactant on all external life cycle stages of the fish parasitic ciliate Ichthyophthirius multifiliis. Journal of Fish Diseases, 41(7), 1147-1152. https://doi.org/10.1111/jfd.12810
Van der Meij, A., Willemse, J., Schneijderberg, M. A., Geurts, R., Raaijmakers, J., & van Wezel, G. (2018). Inter- and intracellular colonization of Arabidopsis roots by endophytic actinobacteria and the impact of plant hormones on their antimicrobial activity. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 111(5), 679-690. https://doi.org/10.1101/222844, https://doi.org/10.1007/s10482-018-1014-z
Carrion, V. J., Cordovez, V., Tyc, O., Etalo, D. W., De Bruijn, I., de Jager, V. C. L.,... Raaijmakers, J. M. (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease suppressive soils. ISME Journal, 12, 2307-2321. https://doi.org/10.1038/s41396-018-0186-x
Le, C. N., Hoang, T. K., Thai, T. H., Tran, T. L., Phan, T. P. N., & Raaijmakers, J. M. (2018). Isolation, characterization and comparative analysis of plant-associated bacteria for suppression of soil-borne diseases of field-grown groundnut in Vietnam. Biological Control, in press, 256-262. https://doi.org/10.1016/j.biocontrol.2018.03.014
Kulkarni, P., A. Wilschut, R., J.F. Verhoeven, K., H. van der Putten, W., & Garbeva, P. (2018). LAESI mass spectrometry imaging as a tool to differentiate the root metabolome of native and range-expanding plant species. Planta, 248(December), 1515-1523. https://doi.org/10.1101/322867, https://doi.org/10.1007/s00425-018-2989-4
Etalo, D. W., Díez-Simón, C., De Vos, R. C. H., & Hall, R. D. (2018). Laser Ablation Electrospray Ionization-Mass Spectrometry Imaging (LAESI-MS) for Spatially Resolved Plant Metabolomics. In Plant Metabolomics (pp. 253-267). (Methods in Molecular Biology; Vol. 1778). Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7819-9_18
Barel, J. M., Kuyper, T. W., de Boer, W., Douma, J. C., & De Deyn, G. B. (2018). Legacy effects of diversity in space and time driven by winter cover crop biomass and nitrogen concentration. Journal of Applied Ecology, 55(1), 299-310. https://doi.org/10.1111/1365-2664.12929
Lourenço, K. S. (2018). Linking soil microbial community dynamics to N2O emission after bioenergy residue amendments (PhD Thesis).
Veraart, A. J., Garbeva, P. V., van Beersum, F., Ho, A., Hordijk, C. A., Meima-Franke, M.,... Bodelier, P. L. E. (2018). Living apart together – Bacterial volatiles influence methanotrophic growth and activity. ISME Journal, 12, 1163-1166. https://doi.org/10.1038/s41396-018-0055-7
Lupatini, M., Korthals, G. W., Roesch, L. F. W., & Kuramae, E. E. (2018). Long-term farming systems modulate multi-trophic responses. Science of the Total Environment, 646, 480-490. https://doi.org/10.1016/j.scitotenv.2018.07.323
Mommer, L., Cotton, T., Raaijmakers, J. M., Termorshuizen, A. J., van Ruijven, J., Hendriks, M.,... Dumbrell, A. J. (2018). Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity. New Phytologist, 218(2), 542-553. https://doi.org/10.1111/nph.15036
Qi, Y., Yang, X., Pelaez, A. M., Huerta Lwanga, E., Beriot, N., Gertsen, H.,... Geissen, V. (2018). Macro- and micro- plastics in soil-plant system: effects of plastic mulch film residues on wheat (Triticum aestivum) growth. Science of the Total Environment, 645(15 december 2018), 1048-1056. https://doi.org/10.1016/j.scitotenv.2018.07.229
Durán, P., Tortella, G., Viscardi, S., Barra, P. J., Carrión, V. J., Mora, M. D. L. L., & Pozo, M. J. (2018). Microbial Community Composition in Take-All Suppressive Soils. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.02198
Costa, O. Y. A., Raaijmakers, J. M., & Kuramae, E. E. (2018). Microbial extracellular polymeric substances – ecological functions and impact on soil aggregation. Frontiers in Microbiology, 9, [1636]. https://doi.org/10.3389/FMICB.2018.01636
Heijboer, A., de Ruiter, P. C., Bodelier, P. L. E., & Kowalchuk, G. A. (2018). Modulation of litter decomposition by the soil microbial food web under influence of land use change. Frontiers in Microbiology, 9, [02860]. https://doi.org/10.3389/fmicb.2018.02860
Etalo, D., Jeon, J-S., & Raaijmakers, J. M. (2018). Modulation of plant chemistry by beneficial root microbiota. Natural Product Reports, 35(5), 398-409. https://doi.org/10.1039/C7NP00057J
Armada, E., Leite, M. F. A., Medina Penafiel, M. A., Azcón, R., & Kuramae, E. E. (2018). Native bacteria promote plant growth under drought stress condition without impacting the rhizomicrobiome. FEMS Microbiology Ecology, 94(7), [fiy092]. https://doi.org/10.1093/femsec/fiy092
Lourenço, K. S., Cassman, N., Pijl, A. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2018). Nitrosospira sp. govern nitrous oxide emissions in a tropical soil amended with residues of bioenergy crop. Frontiers in Microbiology, 9, [674]. https://doi.org/10.3389/fmicb.2018.00674
Laanbroek, H. J., Veenhuizen, P. T. M., Keijzer, R. M., & Hefting, M. M. (2018). Numerical relationships between archaeal and bacterial amoA genes vary by Icelandic Andosol classes. Microbial Ecology, 75(1), 204-215. https://doi.org/10.1007/s00248-017-1032-9
Martínez-García, L. B., Korthals, G. W., Brussaard, L., Jørgensen, H. B., & De Deyn, G. B. (2018). Organic management and cover crop species steer soil microbial community structure and functionality along with soil organic matter properties. Agriculture, Ecosystems and Environment, 263. https://doi.org/10.1016/j.agee.2018.04.018
Brenzinger, K., Drost, S. M., Korthals, G. W., & Bodelier, P. L. E. (2018). Organic residue amendments to modulate greenhouse gas emissions from agricultural soils. Frontiers in Microbiology, 9, [3035]. https://doi.org/10.3389/fmicb.2018.03035
Gutiérrez, S., & Zwart, M. (2018). Population bottlenecks in multicomponent viruses: First forays into the uncharted territory of genome-formula drift. Current Opinion in Virology, 33(December), 184-190. https://doi.org/10.1016/j.coviro.2018.09.001
Schnyder, E., Bodelier, P. L. E., Hartmann, M., Henneberger, R., & Niklaus, P. A. (2018). Positive diversity-functioning relationships in model communities of methanotrophic bacteria. Ecology, 99(3), 714-723. https://doi.org/10.1002/ecy.2138
Wen, X., Unger, V., Jurasinski, G., Koebsch, F., Horn, F., Rehder, G.,... Liebner, S. (2018). Predominance of methanogens over methanotrophs in rewetted fens characterized by high methane emissions. Biogeosciences, 15, 6519-6536. https://doi.org/10.5194/bg-15-6519-2018
Cordovez, V., Schop, S., Hordijk, C. A., Dupré de Boulois, H., Coppens, F., Hanssen, I.,... Carrion, V. J. (2018). Priming of plant growth promotion by volatile compounds of root-associated Microbacterium. Applied and Environmental Microbiology, 84(22), [e01865-18. ]. https://doi.org/10.1128/AEM.01865-18
Ngo, T. T. N., Senior, A. M., Culina, A., Santos, E. S. A., Vlak, J. M., & Zwart, M. (2018). Quantitative analysis of the dose–response of white spot syndrome virus in shrimp. Journal of Fish Diseases, 41(11), 1733-1744. https://doi.org/10.1111/jfd.12877
Suleiman, A. K. A., Lourenço, K. S., Pitombo, L., Mendes, L. W., Roesch, L. F. W., Pijl, A. S.,... Kuramae, E. E. (2018). Recycling organic residues in agriculture impacts soil-borne microbial community structure, function and N2O emissions. Science of the Total Environment, 631-632, 1089-1099. https://doi.org/10.1016/j.scitotenv.2018.03.116
Di Lonardo, P., Manrubia, M., De Boer, W., Zweers, A. J., Veen, G. F., & Van der Wal, A. (2018). Relationship between home-field advantage of litter decomposition and priming of soil organic matter. Soil Biology & Biochemistry, 126, 49-56. https://doi.org/10.1016/j.soilbio.2018.07.025
Lourenço, K. S., Suleiman, A. K. A., Pijl, A. S., van Veen, J. A., Cantarella, H., & Kuramae, E. E. (2018). Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion. Microbiome, 6, [142]. https://doi.org/10.1186/s40168-018-0525-1
van Kruistum, H., Bodelier, P. L. E., Ho, A., Meima-Franke, M., & Veraart, A. J. (2018). Resistance and Recovery of Methane Oxidizing Communities depends on Stress Regime and History. Frontiers in Microbiology, 9, [01714]. https://doi.org/10.3389/fmicb.2018.01714
Oyserman, B. O., Medema, M. H., & Raaijmakers, J. M. (2018). Road MAPs to engineer host microbiomes. Current Opinion in Microbiology, 43(June ), 46-54. https://doi.org/10.1016/j.mib.2017.11.023
Berg, G., & Raaijmakers, J. M. (2018). Saving Seed Microbiomes. ISME Journal, 12, 1167-1170. https://doi.org/10.1038/s41396-017-0028-2
Yan, Q., Lopes, L. D., Schaffer, B. T., Kidarsa, T., Vining, O., Philmus, B.,... Loper, J. E. (2018). Secondary metabolism and interspecific competition affect accumulation of spontaneous mutants in the gacS/gacA regulatory system in Pseudomonas protegens. mBio, 9(1), [e01845-17]. https://doi.org/10.1128/mBio.01845-17
Meisner, A., & De Boer, W. (2018). Strategies to maintain natural biocontrol of soil-borne crop diseases during severe drought and rainfall events. Frontiers in Microbiology, 9, [02279]. https://doi.org/10.3389/fmicb.2018.02279
Lourenço, K. S., Rossetto, R., Vitti, A. C., Montezano, Z. F., Soares, J. R., Sousa, R. M.,... Cantarella, H. (2018). Strategies to mitigate the nitrous oxide emissions from nitrogen fertilizer applied with organic fertilizers in sugarcane. Science of the Total Environment, 650, Part I, 1476-1486. https://doi.org/10.1016/j.scitotenv.2018.09.037
Bartelme, R. P., Oyserman, B. O., Blom, J. E., Sepulveda-Villet, O. J., & Newton, R. J. (2018). Stripping Away the Soil: Plant Growth Promoting Microbiology Opportunities in Aquaponics. Frontiers in Microbiology, 9, [8]. https://doi.org/10.3389/fmicb.2018.00008
Sanders, T., & Laanbroek, H. J. (2018). The distribution of sediment and water column nitrification potential in the hyper-turbid Ems estuary. Aquatic Sciences, 80(4), 33. https://doi.org/10.1007/s00027-018-0584-1
Bohm, K. (2018). The ecological role of volatile mediated interactions belowground (PhD Thesis).
Molinaro, F., Tyc, O., Beekwilder, J., Cankar, K., Bertea, C. M., Negre, M., & Garbeva, P. V. (2018). The effect of isabelin, a sesquiterpene lactone from Ambrosia artemisiifolia on soil microorganisms and human pathogens. FEMS Microbiology Letters, 365(4), [fny001]. https://doi.org/10.1093/femsle/fny001
Zhang, Q., & Laanbroek, H. J. (2018). The effects of condensed tannins derived from senescing Rhizophora mangle leaves on carbon, nitrogen and phosphorus mineralization in a Distichlis spicata salt marsh soil. Plant and Soil, 433(1-2), 37-53. https://doi.org/10.1007/s11104-018-3807-2
Mendes, L. W., Raaijmakers, J. M., & Mendes, R. (2018). The rhizosphere microbiome as an auxiliary breeding component in common bean against Fusarium oxysporum. Annual Report of the Bean Improvement Cooperative, LXI(61), 117-118.
Perez Jaramillo, J. E., Carrion, V. J., De Hollander, M., & Raaijmakers, J. M. (2018). The wild side of plant microbiomes. Microbiome, 6(143). https://doi.org/10.1186/s40168-018-0519-z
Marcos, M. S., Barboza, A. D. H., Keijzer, R. M., & Laanbroek, H. J. (2018). Tide as steering factor in structuring archaeal and bacterial ammonia-oxidizing communities in mangrove forest soils dominated by Avicennia germinans and Rhizophora mangle. Microbial Ecology, 75(4), 997-1008. https://doi.org/10.1007/s00248-017-1091-y
Zwart, M., Schenk, M. F., Hwang, S., Koopmanschap, A. B., de Lange, N., van de Pol, L.,... de Visser, A. (2018). Unraveling the causes of adaptive benefits of synonymous mutations in TEM-1 β-lactamase. Heredity, 121, 406-421. https://doi.org/10.1038/s41437-018-0104-z
Van Agtmaal, M., Straathof, A. L., Termorshuizen, A. J., Lievens, B., Hoffland, E., & De Boer, W. (2018). Volatile-mediated suppression of plant pathogens is related to soil properties and microbial community composition. Soil Biology & Biochemistry, 164-174. https://doi.org/10.1016/j.soilbio.2017.11.015
Veraart, A. J., Dimitrov, M., Schrier-Uijl, A. P., Smidt, H., & de Klein, J. J. M. (2017). Abundance, activity and community structure of denitrifiers in drainage ditches, in relation to sediment characteristics, vegetation and land-use. Ecosystems, 20(5), 928-943. https://doi.org/10.1007/s10021-016-0083-y
Reis Lucheta, A., Souza Cannavan, F. S., Tsai, S. M., & Kuramae, E. E. (2017). Amazonian Dark Earth and its Black Carbon Particles Harbor Different Fungal Abundance and Diversity. Pedosphere, 27(October), 832-845. https://doi.org/10.1016/S1002-0160(17)60415-6
Pangesti, N., Vandenbrande, S., Pineda, A., Dicke, M., Raaijmakers, J. M., & Van Loon, J. J. A. (2017). Antagonism between two root-associated beneficial Pseudomonas strains does not affect plant growth promotion and induced resistance against a leaf-chewing herbivore. FEMS Microbiology Ecology, 93(4), [fix038]. https://doi.org/10.1093/femsec/fix038
Pinzari, F., Maggi, O., Lunghini, D., Di Lonardo, P., & Persiani, A. M. (2017). A simple method for measuring fungal metabolic quotient and comparing carbon use efficiency of different isolates: Application to Mediterranean leaf litter fungi. Plant Biosystems, 151(2), 371-376. https://doi.org/10.1080/11263504.2017.1284166
Wilschut, R. A., Silva, J. C. P., Garbeva, P. V., & van der Putten, W. H. (2017). Belowground plant-herbivore interactions vary among climate-driven range-expanding plant species with different degrees of novel chemistry. Frontiers in Plant Science, 8, [fpls.2017.01861]. https://doi.org/10.3389/fpls.2017.01861
Brinkman, E. P., Raaijmakers, C. E., De Boer, W., & van der Putten, W. H. (2017). Changing soil legacies to direct restoration of plant communities. AoB PLANTS, in press, [plx038]. https://doi.org/10.1093/aobpla/plx038
Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L.,... Kuramae, E. E. (2017). Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications. Scientific Reports, 7, [41193]. https://doi.org/10.1038/srep41193
Van der Meij, A., Worsley, S. F., Hutchings, M. I., & van Wezel, G. P. (2017). Chemical ecology of antibiotic production by actinomycetes. FEMS Microbiology Reviews, 41(3), 392-416. https://doi.org/10.1093/femsre/fux005
Gómez Expósito, R., De Bruijn, I., Postma, J., & Raaijmakers, J. M. (2017). Current insights into the role of rhizosphere bacteria in disease suppressive soils. Frontiers in Microbiology, [2529]. https://doi.org/10.3389/fmicb.2017.02529
Dassen, S., Cortois, R., Martens, H., De Hollander, M., Kowalchuk, G. A., van der Putten, W. H., & De Deyn, G. B. (2017). Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity. Molecular Ecology, 26(15), 4085-4098. https://doi.org/10.1111/mec.14175
van der Wal, A., & De Boer, W. (2017). Dinner in the dark: Illuminating drivers of soil organic matter decomposition. Soil Biology & Biochemistry, 105, 45-48. https://doi.org/10.1016/j.soilbio.2016.11.006
de Klein, J. J. M., Overbeek, C. C., Juncher Jørgensen, C., & Veraart, A. J. (2017). Effect of Temperature on Oxygen Profiles and Denitrification Rates in Freshwater Sediments. Wetlands, 37(5), 975-983. https://doi.org/10.1007/s13157-017-0933-1
Ho, A., Ijaz, U. Z., Janssens, T., Ruijs, R., Kim, S. Y., De Boer, W.,... Bodelier, P. L. E. (2017). Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. Global Change Biology Bioenergy, 9(12), 1707-1720. https://doi.org/10.1111/gcbb.12457
Tyc, O., de Jager, V. C. L., Van den Berg, M., Gerards, S., Janssens, T., Zaagman, N.,... Garbeva, P. V. (2017). Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds. Microbial Biotechnology, 10(4), 910-925. https://doi.org/10.1111/1751-7915.12735
Van Agtmaal, M., Straathof, A. L., Termorshuizen, A. J., Teurlincx, S., Hundscheid, M. P. J., Ruyters, S.,... De Boer, W. (2017). Exploring the reservoir of potential fungal plant pathogens in agricultural soil. Applied Soil Ecology, 121, 152-160. https://doi.org/10.1016/j.apsoil.2017.09.032
Yan, Y., Kuramae, E. E., De Hollander, M., Klinkhamer, P. G. L., & van Veen, J. A. (2017). Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere. ISME Journal, 11, 56-66. https://doi.org/10.1038/ismej.2016.108
Van der Wal, A., Klein Gunnewiek, P. J. A., De Hollander, M., & De Boer, W. (2017). Fungal diversity and potential tree pathogens in decaying logs and stumps. Forest Ecology and Management, 406, 266-273. https://doi.org/10.1016/j.foreco.2017.08.018
Schmidt, R. L., de Jager, V. C. L., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K.,... Garbeva, P. V. (2017). Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Scientific Reports, 7, [862 ]. https://doi.org/10.1038/s41598-017-00893-3
Schulz-Bohm, K., Tyc, O., De Boer, W., Peereboom, N., Debets, F., Zaagman, N.,... Garbeva, P. (2017). Fungus-associated bacteriome in charge of their host behaviour. Fungal Genetics and Biology, 102, 38-48. https://doi.org/10.1016/j.fgb.2016.07.011
Cheng, X., Etalo, D. W., van de Mortel, J. E., Dekkers, E., Nguyen, L., Medema, M. H., & Raaijmakers, J. M. (2017). Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens. Environmental Microbiology, 19(11), 4638-4656. https://doi.org/10.1111/1462-2920.13927
Mendes, L. W., Raaijmakers, J. M., De Hollander, M., Mendes, R., & Tsai, S. M. (2017). Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. ISME Journal, 2017(12), 212-224. https://doi.org/10.1038/ismej.2017.158
Zhang, S., Liu, X., Jiang, Q., Shen, G., & Ding, W. (2017). Legacy effects of continuous chloropicrin-fumigation for 3-years on soil microbial community composition and metabolic activity. AMB Express, 7(1), 178. https://doi.org/10.1186/s13568-017-0475-1
Perez Jaramillo, J. E., Carrion, V. J., Bosse, M., Ferrão, L. F. V., De Hollander, M., Garcia, A. A. F.,... Raaijmakers, J. M. (2017). Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits. ISME Journal, 11, 2244-2257. https://doi.org/10.1038/ismej.2017.85
Kurm, V., van der Putten, W. H., De Boer, W., Naus-Wiezer, S. M. H., & Hol, W. H. G. (2017). Low abundant soil bacteria can be metabolically versatile and fast growing. Ecology, 98(2), 555-564. https://doi.org/10.1002/ecy.1670
Geudens, N., Nasir, M. N., Crowet, J-M., Raaijmakers, J. M., Fehér, K., Coenye, T.,... Deleu, M. (2017). Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1859(3), 331-339. https://doi.org/10.1016/j.bbamem.2016.12.013
Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E., & van Veen, J. A. (2017). Methanogens predominate in natural corrosion protective layers on metal sheet piles. Scientific Reports, 7, [11899]. https://doi.org/10.1038/s41598-017-11244-7
Steenbergh, A. K., Veraart, A. J., Ho, A., & Bodelier, P. L. E. (2017). Microbial Ecosystem Functions in Wetlands Under Disturbance. In K. Tate [Ed.], Microbial Biomass: A Paradigm Shift in Terrestrial Biochemistry World Scientific Publishing.
Schulz-Bohm, K., Martín-Sánchez, L., & Garbeva, P. V. (2017). Microbial volatiles: Small molecules with an important role in intra- and inter-kingdom interactions. Frontiers in Microbiology, 8, [02484]. https://doi.org/10.3389/fmicb.2017.02484
Gomez Exposito, R. (2017). Microbiome dynamics of disease suppresive soils (PhD Thesis). Wageningen: Wageningen University.
Leite, M. F. A., Pan, Y., Bloem, J., ten Berge, H., & Kuramae, E. E. (2017). Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank. Scientific Reports, 7, [42634]. https://doi.org/10.1038/srep42634
Cordovez, V., Mommer, L., Moisan, K., Lucas-Barbosa, D., Pierik, R., Mumm, R.,... Raaijmakers, J. M. (2017). Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani. Frontiers in Plant Science, 8, [01262]. https://doi.org/10.3389/fpls.2017.01262
Bosmans, L., de Bruijn, I., Gerards, S., Moerkens, R., Van Looveren, L., Wittemans, L.,... Lievens, B. (2017). Potential for biocontrol of hairy root disease by a Paenibacillus clade. Frontiers in Microbiology, 8, [447]. https://doi.org/10.3389/fmicb.2017.00447
Di Lonardo, P., De Boer, W., Klein Gunnewiek, P. J. A., Hannula, S. E., & Van der Wal, A. (2017). Priming of soil organic matter: Chemical structure of added compounds is more important than the energy content. Soil Biology & Biochemistry, 108, 41-54. https://doi.org/10.1016/j.soilbio.2017.01.017
Eisenhauer, N., Antunes, P. M., Bennett, A. E., Birkhofer, K., Bissett, A., Bowker, M. A.,... Powell, J. R. (2017). Priorities for research in soil ecology. Pedobiologia, 63(Supplement C), 1 - 7. https://doi.org/10.1016/j.pedobi.2017.05.003
Scheublin, T. R. (2017). Protocols for the Identification of Phyllosphere-Induced Pollutant Degradation Genes. In T. J. McGenity, K. N. Timmis, & B. Nogales [Eds.], Hydrocarbon and Lipid Microbiology Protocols: Field Studies (pp. 229-235). ( Springer Protocols Handbooks). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/8623_2015_176
Ho, A., Di Lonardo, P., & Bodelier, P. L. E. (2017). Revisiting life strategy concepts in environmental microbial ecology. FEMS Microbiology Ecology, 93(3), [fix006]. https://doi.org/10.1093/femsec/fix006
Schlemper, T. R., Leite, M. F. A., Reis Lucheta, A., Shimels, M., Bouwmeester, H. J., van Veen, J. A., & Kuramae, E. E. (2017). Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils. FEMS Microbiology Ecology, 93(8), [fix096]. https://doi.org/10.1093/femsec/fix096
Durán, P., Jorquera, M., Viscardi, S., Carrión, V. J., Mora, M. D. L. L., & Pozo, M. J. (2017). Screening and Characterization of Potentially Suppressive Soils against Gaeumannomyces graminis under Extensive Wheat Cropping by Chilean Indigenous Communities. Frontiers in Microbiology, 8, 1552. https://doi.org/10.3389/fmicb.2017.01552
Hannula, S. E., Morriën, E., De Hollander, M., van der Putten, W. H., van Veen, J. A., & De Boer, W. (2017). Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture. ISME Journal, 11, 2294-2304. https://doi.org/10.1038/ismej.2017.90
Paulo, A. M. S., Aydin, R., Dimitrov, M. R., Vreeling, H., Cavaleiro, A. J., García-Encina, P. A.,... Plugge, C. M. (2017). Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria. Applied Microbiology and Biotechnology, 101(12), 5163-5173. https://doi.org/10.1007/s00253-017-8212-x
Lupatini, M., Korthals, G. W., De Hollander, M., Janssens, T. K. S., & Kuramae, E. E. (2017). Soil microbiome is more heterogeneous in organic than in conventional farming system. Frontiers in Microbiology, 7, [2064]. https://doi.org/10.3389/fmicb.2016.02064
Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M.,... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, [14349]. https://doi.org/10.1038/ncomms14349
van Gils, S., Tamburini, G., Lorenzo, M., Biere, A., Van Agtmaal, M., Tyc, O.,... van der Putten, W. H. (2017). Soil pathogen-aphid interactions under differences in soil organic matter and mineral fertilizer. PLoS One, 12(8), [0179695]. https://doi.org/10.1371/journal.pone.0179695
Daebeler, A., Bodelier, P. L. E., Hefting, M. M., Rütting, T., & Laanbroek, H. J. (2017). Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil. Soil Biology & Biochemistry, 107, 114-124. https://doi.org/10.1016/j.soilbio.2016.12.013
Van der Wal, A., Klein Gunnewiek, P. J. A., & De Boer, W. (2017). Soil-wood interactions: influence of decaying coniferous and broadleaf logs on composition of soil fungal communities. Fungal Ecology, 30(December), 132-134. https://doi.org/10.1016/j.funeco.2017.08.006
Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A., & Kuramae, E. E. (2017). Successive DNA extractions improve characterization of soil microbial communities. PeerJ, 5, [e2915]. https://doi.org/10.7717/peerj.2915
Li, X., De Boer, W., Zhang, Y., Ding, C., Zhang, T., & Wang, X. (2017). Suppression of soil-borne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea. Soil Biology & Biochemistry, 116, 120 - 130. https://doi.org/10.1016/j.soilbio.2017.09.029
Ossowicki, A., Jafra, S., & Garbeva, P. V. (2017). The Antimicrobial Volatile Power of the Rhizospheric Isolate Pseudomonas donghuensis P482. PLoS One, 12(3), [174362]. https://doi.org/10.1371/journal.pone.0174362
Tyc, O., Song, C., Dickschat, J., Vos, M., & Garbeva, P. V. (2017). The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria. Trends in Microbiology, 25(4), 280-292. https://doi.org/10.1016/j.tim.2016.12.002
Westhoff, S., van Leeuwe, T. M., Qachach, O., Zhang, Z., van Wezel, G. P., & Rozen, D. E. (2017). The evolution of no-cost resistance at sub-MIC concentrations of streptomycin in Streptomyces coelicolor. ISME Journal, 11, 1168-1178. https://doi.org/10.1038/ismej.2016.194
Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W., & Garbeva, P. V. (2017). The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators. ISME Journal, 11, 817-820. https://doi.org/10.1038/ismej.2016.144
Hilt, S., Brothers, S., Jeppesen, E., Veraart, A. J., & Kosten, S. (2017). Translating Regime Shifts in Shallow Lakes into Changes in Ecosystem Functions and Services. BioScience, 67(10), 928-936. https://doi.org/10.1093/biosci/bix106
Schilder, J., Van Hardenbroek, M., Bodelier, P. L. E., Kirilova, E. P., Leuenberger, M., Lotter, A. F., & Heiri, O. (2017). Trophic state changes can affect the importance of methane-derived carbon in aquatic food webs. Proceedings of the Royal Society B-Biological Sciences, 284(1857), [278]. https://doi.org/10.1098/rspb.2017.0278
De Boer, W. (2017). Upscaling of fungal-bacterial interactions: from the lab to the field. Current Opinion in Microbiology, 37, 35-41. https://doi.org/10.1016/j.mib.2017.03.007
Schmidt, R. L. (2017). Volatile communication between fungi and bacteria (PhD Thesis). Wageningen: Wageningen University.
Kielak, A. M., Cipriano, M. A. P., & Kuramae, E. E. (2016). Acidobacteria strains from subdivision 1 act as plant growth-promoting bacteria. Archives of Microbiology, 198(December), 987-993. https://doi.org/10.1007/s00203-016-1260-2
Mesarich, C. H., Stergiopoulos, I., Beenen, H. G., Cordovez, V., Guo, Y., Karimi Jashni, M.,... de Wit, P. J. G. M. (2016). A conserved proline residue in Dothideomycete Avr4 effector proteins is required to trigger a Cf-4-dependent hypersensitive response. Molecular Plant Pathology, 17(1), 84-95. https://doi.org/10.1111/mpp.12265
Bosmans, L., De Bruijn, I., de Mot, R., Readers, H., & Lievens, B. (2016). Agar composition affects in vitro screening of biocontrol activity of antagonistic microorganisms. Journal of Microbiological Methods, 127, 7-9. https://doi.org/10.1016/j.mimet.2016.05.004
Yan, Y. (2016). Assemblage and functioning of bacterial communities in soil and rhizosphere (PhD Thesis).
Kielak, A., Scheublin, T., Mendes, L. W., Van Veen, J. A., & Kuramae, E. E. (2016). Bacterial community succession in pine-wood decomposition. Frontiers in Microbiology, 7, [00231]. https://doi.org/10.3389/fmicb.2016.00231
Ho, A., Angel, R., Veraart, A. J., Daebeler, A., Jia, Z., Kim, S. Y.,... Bodelier, P. L. E. (2016). Biotic interactions in microbial communities as modulators of biogeochemical processes: Methanotrophy as a model system. Frontiers in Microbiology, 7, [1285]. https://doi.org/10.3389/fmicb.2016.01285
van Dam, N. M., Weinhold, A., & Garbeva, P. V. (2016). Calling in the Dark: the Role of Volatiles for Communication in the Rhizosphere. In Deciphering Chemical language of Plant Communication (pp. 175-210). (Signaling and Communication in Plants). Springer. https://doi.org/10.1007/978-3-319-33498-1_8
Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A., & Wakelin, S. A. (2016). Challenges and opportunities in harnessing soil disease suppressiveness for sustainable pasture production. Soil Biology & Biochemistry, 95(April), 100-111. https://doi.org/10.1016/j.soilbio.2015.12.006
Rice, M. C., Norton, J. M., Valois, F., Bollmann, A., Bottomley, P. J., Klotz, M. G.,... Daum, C. (2016). Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil. Standards in Genomic Sciences, 11(1), 46. https://doi.org/10.1186/s40793-016-0168-4
Adam, E., Groenenboom, A. E., Kurm, V. K., Rajewska, M., Schmidt, R. L., Tyc, O.,... Salles, J. (2016). Controlling the microbiome: microhabitat adjustments for successful biocontrol strategies in soil and human gut: Opinion article. Frontiers in Microbiology, in press, [1079]. https://doi.org/10.3389/fmicb.2016.01079
Cai, Y., Yan, Z., Bodelier, P. L. E., Conrad, R., & Jia, Z. (2016). Conventional methanotrophs are responsible for atmospheric methane oxidation in paddy soils. Nature Communications, 7, [11728]. https://doi.org/10.1038/ncomms11728
Creamer, R. E., Hannula, S. E., Leeuwen, J. P. V., Stone, D., Rutgers, M., Schmelz, R. M.,... Lemanceau, P. (2016). Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe. Applied Soil Ecology, 97, 112-124. https://doi.org/10.1016/j.apsoil.2015.08.006
Liu, Y., Zachow, C., Raaijmakers, J. M., & De Bruijn, I. (2016). Elucidating the diversity of aquatic Microdochium and Trichoderma species and their activity against the fish pathogen Saprolegnia diclina. International Journal of Molecular Sciences, 17, [140]. https://doi.org/10.3390/ijms17010140
Pitombo, L., do Carmo, J. B., De Hollander, M., Rosetto, R., Lopez, M. V., Cantarella, H., & Kuramae, E. E. (2016). Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop. Global Change Biology Bioenergy, 8(5), 867-879. https://doi.org/10.1111/gcbb.12284
Reis Lucheta, A., Souza Cannavan, F. S., Roesch, L., Tsai, S. M., & Kuramae, E. E. (2016). Fungal community assembly in the Amazonian Dark Earth. Microbial Ecology, 71(May), 962-973. https://doi.org/10.1007/s00248-015-0703-7
Chapelle, E., Mendes, R., Bakker, P. A. H. M., & Raaijmakers, J. (2016). Fungal invasion of the rhizosphere microbiome. ISME Journal, 10, 265-268. https://doi.org/10.1038/ismej.2015.82
Bai, Y., Eijsink, V. G. H., Kielak, A. M., Van Veen, J. A., & De Boer, W. (2016). Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria. Environmental Microbiology, 18(1), 38-49. https://doi.org/10.1111/1462-2920.12545
Kolter, R., & van Wezel, G. P. (2016). Goodbye to brute force in antibiotic discovery? Nature Microbiology, 1, 15020. https://doi.org/10.1038/nmicrobiol.2015.20
Perez Jaramillo, J. E., Mendes, R., & Raaijmakers, J. (2016). Impact of plant domestication on rhizosphere microbiome assembly and functions. Plant Molecular Biology, 90(6), 635-644. https://doi.org/10.1007/s11103-015-0337-7
van der Voort, M., Kempenaar, M., van Driel, M., Raaijmakers, J. M., & Mendes, R. (2016). Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression. Ecology Letters, 19(4), 375-382. https://doi.org/10.1111/ele.12567
Nguyen, D., Melnik, A. V., Koyama, N., Lu, X., Schorn, M., Fang, J.,... Dorrestein, P. C. (2016). Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides. Nature Microbiology, 2, [16197]. https://doi.org/10.1038/nmicrobiol.2016.197
Flury, P., Aellen, N., Ruffner, B., Pechy-Tarr, M., Fataar, S., Metla, Z.,... Maurhofer, M. (2016). Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics. ISME Journal, 10, 2527-2542. https://doi.org/10.1038/ismej.2016.5
Urem, M., Świątek-Połatyńska, M. A., Rigali, S., & van Wezel, G. P. (2016). Intertwining nutrient-sensory networks and the control of antibiotic production in Streptomyces. Molecular Microbiology, 102(2), 183-195. https://doi.org/10.1111/mmi.13464
Baltz, R. H., Ikeda, H., Katz, L., Kim, E-S., van Wezel, G. P., & Wright, G. (2016). Introduction to the Special Issue: "Natural Product Discovery and Development in the Genomic Era": Editorial. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 109. https://doi.org/10.1007/s10295-015-1715-5
Rinkel, J., Rabe, P., Garbeva, P. V., & Dickschat, J. (2016). Lessons from 1,3-Hydride Shifts in Sesquiterpene Cyclizations. Angewandte Chemie, 55(43), 13593-13596. https://doi.org/10.1002/anie.201608042
Cipriano, M. A. P., Lupatini, M., Santos, L., Silva, M. D., Roesch, L. F. W., Destefano, S.,... Kuramae, E. E. (2016). Lettuce and rhizosphere microbiome responses to growth promoting Pseudomonas species under field conditions. FEMS Microbiology Ecology, 92(12), [fiw197]. https://doi.org/10.1093/femsec/fiw197
Song, C., Kidarsa, T., van de Mortel, J., Loper, J. E., & Raaijmakers, J. M. (2016). Living on the edge: emergence of spontaneous gac mutations in Pseudomonas protegens during swarming motility. Environmental Microbiology, 18(10), 3453-3465. https://doi.org/10.1111/1462-2920.13288
Wu, C., Choi, Y. H., & van Wezel, G. P. (2016). Metabolic profiling as a tool for prioritizing antimicrobial compounds. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 299-312. https://doi.org/10.1007/s10295-015-1666-x
Schmidt, R., Etalo, D. N., de Jager, V. C. L., Gerards, S., Zweers, H., De Boer, W., & Garbeva, P. V. (2016). Microbial small talk: volatiles in fungal-bacterial interactions. Frontiers in Microbiology, 6, [01495]. https://doi.org/10.3389/fmicb.2015.01495
Tyc, O. (2016). Mining into interspecific bacterial interactions (PhD Thesis). Wageningen: Wageningen University.
Soares, J. R., Cassman, N., Kielak, A. M., Pijl, A. S., do Carmo, J. B., Lourenço, K. S.,... Kuramae, E. E. (2016). Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil. Scientific Reports, 6, [30349]. https://doi.org/10.1038/srep30349
Campanharo, J. C., Kielak, A. M., Castellane, T. C., Kuramae, E. E., & Lemos, E. G. (2016). Optimized medium culture for Acidobacteia subdivision 1 strains. FEMS Microbiology Letters, 363(21), [fnw245]. https://doi.org/10.1093/femsle/fnw245
Van der Wal, A., Klein Gunnewiek, P. J. A., Cornelissen, J. H. C., Crowther, T. W., & De Boer, W. (2016). Patterns of natural fungal community assembly during initial decay of coniferous and broadleaf tree logs. Ecosphere, 7(7), [1393]. https://doi.org/10.1002/ecs2.1393
Gonzalez, D., Rodriguez-Carres, M., Boekhout, T., Stalpers, J., Kuramae, E. E., Nakatani, A. K.,... Cubeta, M. A. (2016). Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales. Fungal Biology, 120(4), 603-619. https://doi.org/10.1016/j.funbio.2016.01.012
Cassman, N., Leite, M. F. A., Pan, Y., De Hollander, M., van Veen, J. A., & Kuramae, E. E. (2016). Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland. Scientific Reports, 6, [23680]. https://doi.org/10.1038/srep23680
Balk, M., Keuskamp, J., & Laanbroek, H. J. (2016). Potential of sulfate reduction in mangrove forest soils: Comparison between two dominant species of the Americas. Frontiers in Microbiology, in press, [2016.01855]. https://doi.org/10.3389/fmicb.2016.01855
Hannula, S. E., & van Veen, J. A. (2016). Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils. Frontiers in Microbiology, 7, [fmicb.2016.01897]. https://doi.org/10.3389/fmicb.2016.01897
Ferreira de Carvalho, J. L., de Jager, V. C. L., Van Gurp, T. P., Wagenmaker, N., & Verhoeven, K. J. F. (2016). Recent and dynamic transposable elements contribute to genomic divergence under asexuality. BMC Genomics, 17, [884]. https://doi.org/10.1186/s12864-016-3234-9
Ho, A., van den Brink, E., Reim, A., Krause, S., & Bodelier, P. L. E. (2016). Recurrence and frequency of disturbance have cumulative effect on methanotrophic activity, abundance, and community structure. Frontiers in Microbiology, 6, [01493]. https://doi.org/10.3389/fmicb.2015.01493
Ho, A., Lueke, C., Reim, A., & Frenzel, P. (2016). Resilience of (seed bank) aerobic methanotrophs and methanotrophic activity to desiccation and heat stress. Soil Biology & Biochemistry, 101(October), 130-138. https://doi.org/10.1016/j.soilbio.2016.07.015
Cheng, X., Cordovez, V., Etalo, D. W., van der Voort, M., & Raaijmakers, J. M. (2016). Role of the GacS Sensor Kinase in the Regulation of Volatile Production by Plant Growth-Promoting Pseudomonas fluorescens SBW25. Frontiers in Plant Science, 7, 1706. https://doi.org/10.3389/fpls.2016.01706
Griffiths, B. S., Römbke, J., Schmelz, R. M., Scheffczyk, A., Faber, J. H., Bloem, J.,... Stone, D. (2016). Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function. Ecological Indicators, 69, 213-223. https://doi.org/10.1016/j.ecolind.2016.04.023
Weisskopf, L., Garbeva, P. V., Ryu, C-M., & Raaijmakers, J. M. (2016). Smelly fumes: volatile-mediated communication between bacteria and other organisms. Frontiers in Microbiology, 7, [2031]. https://doi.org/10.3389/fmicb.2016.02031
Raaijmakers, J. M., & Mazzola, M. (2016). Soil immune responses. Science, 352(6292), 1392-1393. https://doi.org/10.1126/science.aaf3252
Uroz, S., Oger, P., Tisserand, E., Cebron, A., Turpault, M. -P., Buee, M.,... Frey-Klett, P. (2016). Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities. Scientific Reports, 6. https://doi.org/10.1038/srep27756
Kim, G. W., Ho, A., Kim, P. J., & Kim, S. Y. (2016). Stimulation of methane oxidation potential and effects on vegetation growth by bottom ash addition in a landfill final evapotranspiration cover. Waste Management, 55(September), 306-312. https://doi.org/10.1016/j.wasman.2016.03.058
Yagüe, P., Willemse, J., Koning, R. I., Rioseras, B., López-García, M. T., Gonzalez-Quiñonez, N.,... Manteca, Á. (2016). Subcompartmentalization by cross-membranes during early growth of Streptomyces hyphae. Nature Communications, 7, 12467 EP -. https://doi.org/10.1038/ncomms12467
van der Aart, L. T., Lemmens, N., van Wamel, W. J., & van Wezel, G. P. (2016). Substrate Inhibition of VanA by D-Alanine Reduces Vancomycin Resistance in a VanX-Dependent Manner. Antimicrobial Agents and Chemotherapy, 60(8), 4930-4939. https://doi.org/10.1128/aac.00276-16
Haque, M. M., Biswas, J. C., Kim, S. Y., & Kim, P. J. (2016). Suppressing methane emission and global warming potential from rice fields through intermittent drainage and green biomass amendment. Soil Use and Management, 32(1), 72-79. https://doi.org/10.1111/sum.12229
Tecon, R., & Leveau, J. H. J. (2016). Symplasmata are a clonal, conditional, and reversible type of bacterial multicellularity. Scientific Reports, 6, [31914]. https://doi.org/10.1038/srep31914
Suleiman, A. K. A., Gonzatto, R., Aita, C., Lupatini, M., Jacques, R., Kuramae, E. E.,... Roesch, L. (2016). Temporal variability of soil microbial communities after application of dicyandiamide-treated swine slurry and mineral fertilizers. Soil Biology & Biochemistry, 97, 71-82. https://doi.org/10.1016/j.soilbio.2016.03.002
Kielak, A. M., Barreto, C. C., Kowalchuk, G. A., van Veen, J. A., & Kuramae, E. E. (2016). The ecology of Acidobacteria: moving beyond genes and genomes. Frontiers in Microbiology, [744]. https://doi.org/10.3389/fmicb.2016.00744
Sedlacek, C. J., Nielsen, S., Greis, K. D., Haffey, W. D., Revsbech, N. P., Ticak, T.,... Bollmann, A. (2016). The effect of bacterial community members on the proteome of the ammonia-oxidizing bacterium Nitrosomonas sp. Is79. Applied and Environmental Microbiology, 82(15), 4776-4788. https://doi.org/10.1128/AEM.01171-16
Liu, Y. (2016). The fish egg microbiome: diversity and activity against the oomycete pathogen Saprolegnia (PhD Thesis).
Tripathi, B. M., Edwards, D. P., Mendes, L. W., Kim, M., Dong, K., Kim, H., & Adams, J. M. (2016). The impact of tropical forest logging and oil palm agriculture on the soil microbiome. Molecular Ecology, 25(10), 2244-2257. https://doi.org/10.1111/mec.13620
Ballhausen, M-B., & De Boer, W. (2016). The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria. Soil Biology & Biochemistry, 102(November), 14-17. https://doi.org/10.1016/j.soilbio.2016.06.014
Ballhausen, M-B., Vandamme, P., & De Boer, W. (2016). Trait differentiation within the fungus-feeding (mycophagous) bacterial genus Collimonas. PLoS One, 11(6), [e0157552]. https://doi.org/10.1371/journal.pone.0157552
Kim, S. Y., Gutierrez, J., & Kim, P. J. (2016). Unexpected stimulation of CH4 emissions under continuous no-tillage system in mono-rice paddy soils during cultivation. Geoderma, 267, 34-40. https://doi.org/10.1016/j.geoderma.2015.12.021
Tyc, O., Tomás-Menor, L., Garbeva, P. V., Barrajón-Catalán, E., & Micol, V. (2016). Validation of the AlamarBlue® assay as a fast screening method to determine the antimicrobial activity of botanical extracts. PLoS One, 11(12), [e0169090]. https://doi.org/10.1371/journal.pone.0169090
Cordovez, V. (2016). Volatile-mediated interactions in the rhizosphere (PhD Thesis). Wageningen: Wageningen University.
Caizan Juanarena, L., ter Heijne, A., Buisman, C., & Van der Wal, A. (2016). Wood Degradation by Thermotolerant and Thermophilic Fungi for Sustainable Heat Production. ACS Sustainable Chemistry & Engineering, 4(12), 6355-6361. https://doi.org/10.1021/acssuschemeng.6b00914
Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A., & Wakelin, S. A. (2015). A bioassay to compare the disease suppressive capacity of pasture soils. New Zealand Plant Protection, 68, 151-159.
Schulz-Bohm, K., Zweers, H., De Boer, W., & Garbeva, P. (2015). A fragrant neighborhood: Volatile mediated bacterial interactions in soil. Frontiers in Microbiology, 6, [01212]. https://doi.org/10.3389/fmicb.2015.01212
Barbosa Lima, A., Souza Cannavan, F. S., Navarrete, A. A., Kuramae, E. E., Teixeira, W. G., & Tsai, S. M. (2015). Amazonian Dark Earth and plant species from the Amazon region contribute to shape rhizosphere bacterial communities. Microbial Ecology, 69(4), 855-866. https://doi.org/10.1007/s00248-014-0472-8
Daebeler, A., Bodelier, P. L. E., Hefting, M. M., & Laanbroek, H. J. (2015). Ammonia-limited conditions cause of Thaumarchaeal dominance in volcanic grassland soil. FEMS Microbiology Ecology, 91(3), [fiv014]. https://doi.org/10.1093/femsec/fiv014
Cretoiu, M., Berini, F., Kielak, A., Marinelli, F., & van Elsas, J. (2015). A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil: Applied Microbiology and Biotechnology. Applied Microbiology and Biotechnology, 99(19), 8199-8215. https://doi.org/10.1007/s00253-015-6639-5
De Boer, W., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., De Ridder-Duine, A. S., Thion, C., van Veen, J. A., & Van der Wal, A. (2015). Antifungal rhizosphere bacteria can increase as response to the presence of saprotrophic fungi. PLoS One, 10(9), [e0137988]. https://doi.org/10.1371/journal.pone.0137988
Cong, H., Zou, D., Wu, F., & Zhang, Q. (2015). A study on coupling and coordinating development mechanism of China's low-carbon development and environmental resources system. Nature Environment and Pollution Technology, 14(3), 611-619.
Rudnick, M. B., van Veen, J. A., & de Boer, W. (2015). Baiting of bacteria with hyphae of common soil fungi revealed a diverse group of potentially mycophagous secondary consumers in the rhizosphere. Soil Biology & Biochemistry, 88(September), 73-82. https://doi.org/10.1016/j.soilbio.2015.04.015
Veraart, A. J., Steenbergh, A. K., Ho, A., Kim, S. Y., & Bodelier, P. L. E. (2015). Beyond nitrogen: the importance of phosphorus for CH4 oxidation in soils and sediments. Geoderma, 259-260(December), 337-346. https://doi.org/10.1016/j.geoderma.2015.03.025
Ganendra, G., Mercado-Garcia, D., Hernandez-Sanabria, E., Peiren, N., De Campeneere, S., Ho, A., & Boon, N. (2015). Biofiltration of Methane from Ruminants Gas Effluent Using Autoclaved Aerated Concrete as the Carrier Material. Chemical Engineering Journal, 277, 318-323. https://doi.org/10.1016/j.cej.2015.04.128
Ganendra, G., Wang, J., Ramos, J. A., Derluyn, H., Rahier, H., Cnudde, V.,... Boon, N. (2015). Biogenic concrete protection driven by the formate oxidation by Methylocystis parvus OBBP. Frontiers in Microbiology, 6, [786]. https://doi.org/10.3389/fmicb.2015.00786
Kim, S. Y., Veraart, A., Meima-Franke, M., & Bodelier, P. (2015). Combined effects of carbon, nitrogen and phosphorus on CH4 production and denitrification in wetland sediments. Geoderma, Online, 354-361. https://doi.org/10.1016/j.geoderma.2015.03.015
De Bruijn, I., Cheng, X., de Jager, V. C. L., Gómez Expósito, R., Watrous, J., Patel, N.,... Raaijmakers, J. M. (2015). Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics, 16, [991]. https://doi.org/10.1186/s12864-015-2191-z
Krause, S., Niklaus, P. A., Morcillo, S. B., Meima-Franke, M., Lüke, C., Reim, A., & Bodelier, P. L. E. (2015). Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows. FEMS Microbiology Ecology, 91(11), [fiv119]. https://doi.org/10.1093/femsec/fiv119
Hol, G., De Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A., & van der Putten, W. (2015). Context dependency and saturating effects of loss of rare soil microbes on plant productivity. Frontiers in Plant Science, 6, [485]. https://doi.org/10.3389/fpls.2015.00485
Mendes, R., & Raaijmakers, J. M. (2015). Cross-kingdom similarities in microbiome functions. ISME Journal, 9, 1905-1907. https://doi.org/10.1038/ismej.2015.7
Ho, A., & Bodelier, P. (2015). Diazotrophic methanotrophs in peatlands: the missing link? Plant and Soil, 389(1-2), 419-423. https://doi.org/10.1007/s11104-015-2393-9
Gómez Expósito, R., Postma, J., Raaijmakers, J. M., & de Bruijn, I. (2015). Diversity and activity of Lysobacter species from disease suppressive soils. Frontiers in Microbiology, 6(1243), [2015.01243]. https://doi.org/10.3389/fmicb.2015.01243
Cordovez, V., Carrion, V., Etalo, D. W., Mumm, R., Zhu, H., Van Wezel, G. P., & Raaijmakers, J. M. (2015). Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil. Frontiers in Microbiology, 6. https://doi.org/10.3389/fmicb.2015.01081
Liu, Y., Rzeszutek, E., van der Voort, M., Wu, C. H., Thoen, E., Skaar, I.,... De Bruijn, I. (2015). Diversity of aquatic Pseudomonas species and their activity against the fish pathogenic oomycete Saprolegnia. PLoS One, 10(8), [e0136241]. https://doi.org/10.1371/journal.pone.0136241
Wolf, A. B., Rudnick, M. B., De Boer, W., & Kowalchuk, G. A. (2015). Early colonizers of unoccupied habitats represent a minority of the soil bacterial community. FEMS Microbiology Ecology, 91(5), [fiv024]. https://doi.org/10.1093/femsec/fiv024
Bai, Y. (2015). Ecological functioning of bacterial chitinases in soil (PhD Thesis). Leiden University.
Waghmode, T. R., Haque, M. M., Kim, S. Y., & Kim, P. J. (2015). Effective Suppression of Methane Emission by 2-Bromoethanesulfonate during Rice Cultivation. PLoS One, 10(11), [ e0142569]. https://doi.org/10.1371/journal.pone.0142569
Zhang, L., Hou, L., Laanbroek, H. J., Guo, D., & Wang, Q. (2015). Effects of Mowing Heights on N2O Emission from Temperate Grasslands in Inner Mongolia, Northern China. American Journal of Climate Change, 04(05), 397-407. https://doi.org/10.4236/ajcc.2015.45032
Benner, J., De Smet, D., Ho, A., Kerckhof, F-M., Vanhaecke, L., Heylen, K., & Boon, N. (2015). Exploring methane-oxidizing communities for the co-metabolic degradation of organic micropollutants. Applied Microbiology and Biotechnology, 99(8), 3609-3618. https://doi.org/10.1007/s00253-014-6226-1
Song, C., Schmidt, R. L., de Jager, V. C. L., Krzyzanowska, D., Jongedijk, E., Cankar, K.,... Garbeva, P. V. (2015). Exploring the genomic traits of fungus-feeding bacterial genus Collimonas. BMC Genomics, 16, [1103]. https://doi.org/10.1186/s12864-015-2289-3
Henneberger, R., Chiri, E., Bodelier, P. L. E., Frenzel, P., Luke, C., & Schroth, M. H. (2015). Field-scale tracking of active methane-oxidizing communities in a landfill-cover soil reveals spatial and seasonal variability. Environmental Microbiology, 17(5), 1721-1737. https://doi.org/10.1111/1462-2920.12617
Wu, J-J., de Jager, V., Deng, W., & Leveau, J. (2015). Finished Genome Sequence of Collimonas arenae Cal35. Genome Announcements, 3(1), [e01408-14]. https://doi.org/10.1128/genomeA.01408-14
Cheng, X., van der Voort, M., & Raaijmakers, J. M. (2015). Gac-mediated changes in pyrroloquinoline quinone biosynthesis enhance the antimicrobial activity of Pseudomonas fluorescens SBW25. Environmental Microbiology Reports, 7(1), 139-147. https://doi.org/10.1111/1758-2229.12231
van der Voort, M., Meijer, H., Schmidt, Y., Watrous, J., Dekkers, E., Mendes, R.,... Raaijmakers, J. M. (2015). Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Frontiers in Microbiology, 6, [693]. https://doi.org/10.3389/fmicb.2015.00693
Czajkowski, R., Ozymko, Z., de Jager, V., Siwinska, J., Smolarska, A., Ossowicki, A.,... Lojkowska, E. (2015). Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages (phi)PD10.3 and (phi)PD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp. PLoS One, 10(3), [e0119812]. https://doi.org/10.1371/journal.pone.0119812
Faassen, E. J., Veraart, A., Van Nes, E. H., Dakos, V., Lürling, M., & Scheffer, M. (2015). Hysteresis in an experimental phytoplankton population. Oikos, 124(12), 1617-1623. https://doi.org/10.1111/oik.02006
Mendes, L. W., Navarrete, A. A., Borges, C. D., Kuramae, E. E., & Tsai, S. M. (2015). Impact of land-use changes in the Amazon on bacterial diversity, composition and distribution. In F. Q. Brearley, & A. D. Thomas [Eds.], Land-use Change Impacts on Soil Process: Tropical and Savannah Ecosystems (Chapter 5 ed., pp. 41-54). Wallingford, UK: CABI Publisher.
Hwang, H. Y., Kim, G. W., Lee, Y. B., Kim, P. J., & Kim, S. Y. (2015). Improvement of the Value of Green Manure via Mixed Hairy Vetch and Barley Cultivation in Temperate Paddy Soil. Field Crops Research, 183(November), 138-146. https://doi.org/10.1016/j.fcr.2015.08.001
Philmus, B., Shaffer, B., Kidarsa, T., Yan, Q., Raaijmakers, J., Begley, T., & Loper, J. (2015). Investigations into the biosynthesis, regulation and self-resistance of toxoflavin in Pseudomonas protegens Pf-5. ChemBioChem, 16(12), 1782-1790. https://doi.org/10.1002/cbic.201500247
Mendes, L. W., Brossi, M. J. L., Kuramae, E. E., & Tsai, S. M. (2015). Land-use system shapes soil bacterial communities in Southeastern Amazon region. Applied Soil Ecology, 95, 151-160. https://doi.org/10.1016/j.apsoil.2015.06.005
van Agtmaal, M., van Os, G., Hol, G., Hundscheid, M. P. J., Runia, W., Hordijk, C., & De Boer, W. (2015). Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles. Frontiers in Microbiology, 6, [701]. https://doi.org/10.3389/fmicb.2015.00701
Song, C., Sundqvist, G., Malm, E., de Bruijn, I., Kumar, A., van de Mortel, J.,... Raaijmakers, J. (2015). Lipopeptide biosynthesis in Pseudomonas fluorescens is regulated by the protease complex ClpAP. BMC Microbiology, 15, [29]. https://doi.org/10.1186/s12866-015-0367-y
Ho, A., El-Hawwary, A. H. M., Kim, S. Y., Meima-Franke, M., & Bodelier, P. (2015). Manure-associated stimulation of soil-borne methanogenic activity in agricultural soils. Biology and Fertility of Soils, 51(4), 511-516. https://doi.org/10.1007/s00374-015-0995-2
Kim, P. J., Bodelier, P. L. E., & Lu, Y. (2015). Mechanisms controlling greenhouse gas emissions from soils. Geoderma, 259-260(December), 321-322. https://doi.org/10.1016/j.geoderma.2015.07.009
Ganendra, G., Mercado-Garcia, D., Hernandez-Sanabria, E., Boeckx, P., Ho, A., & Boon, N. (2015). Methane biofiltration using Autoclaved Aerated Concrete as the carrier material. Applied Microbiology and Biotechnology, 99(17), 7307-7320. https://doi.org/10.1007/s00253-015-6646-6
Schulz, K., Hunger, S., Brown, G. G., Tsai, S. M., Cerri, C. C., Conrad, R., & Drake, H. (2015). Methanogenic Food Web in Gut Contents of the Methane-Emitting Earthworm Eudrilus eugeniae from Brazil. ISME Journal, 9, 1778-1792. https://doi.org/10.1038/ismej.2014.262
Ballhausen, M-B., van Veen, J. A., Hundscheid, M. P. J., & De Boer, W. (2015). Methods for baiting and enriching fungus-feeding (mycophagous) rhizosphere bacteria. Frontiers in Microbiology, 6, [01416]. https://doi.org/10.3389/fmicb.2015.01416
Lupatini, M. (2015). Microbial communities in Pampa soils; impact of land-use chenges; soil type and climate conditions (PhD Thesis).
Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K.,... Glockner, F. O. (2015). Minimum Information about a Biosynthetic Gene cluster: commentary. Nature Chemical Biology, 11(9), 625-631. https://doi.org/10.1038/nchembio.1890
Song, C., Mazzola, M., Cheng, X., Oetjen, J., Alexandrov, T., Dorrestein, P. C.,... Raaijmakers, J. (2015). Molecular and chemical dialogues in bacteria-protozoa interactions. Scientific Reports, 5, [12837]. https://doi.org/10.1038/srep12837
Rudnick, M. B. (2015). Mycophagous soil bacteria (PhD Thesis). Wageningen University.
Van der Wal, A., Ottosson, E. G. B., & De Boer, W. (2015). Neglected role of fungal community composition in explaining variation in wood decay rates. Ecology, 96(1), 124-133. https://doi.org/10.1890/14-0242.1
Balk, M., Laverman, A. M., Keuskamp, J. A., & Laanbroek, H. J. (2015). Nitrate ammonification in mangrove soils: A hidden source of nitrite? Frontiers in Microbiology, 6, [166]. https://doi.org/10.3389/fmicb.2015.00166
Hol, G., Garbeva, P., Hordijk, C., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., Van Agtmaal, M.,... De Boer, W. (2015). Non-random species loss in bacterial communities reduces antifungal volatile production. Ecology, 96(8), 2042-2048. https://doi.org/10.1890/14-2359.1
Haque, M. M., Kim, S. Y., Kim, G. W., & Kim, P. J. (2015). Optimization of removal and recycling ratio of cover crop biomass using carbon balance to sustain soil organic carbon stocks in a mono-rice paddy system. Agriculture, Ecosystems and Environment, 207, 119-125. https://doi.org/10.1016/j.agee.2015.03.022
Kim, S. Y., Park, C. K., Gwon, H. S., Khan, M. I., & Kim, P. J. (2015). Optimizing the harvesting stage of rye as a green manure to maximize nutrient production and to minimize methane production in mono-rice paddies. Science of the Total Environment, 537(December), 441-446. https://doi.org/10.1016/j.scitotenv.2015.07.061
Rudnick, M. B., van Veen, J. A., & De Boer, W. (2015). Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas? Environmental Microbiology Reports, 7(5), 709-714. https://doi.org/10.1111/1758-2229.12290
Deveau, A., Barret, M., Diedhiou, A. G., Leveau, J., de Boer, W., Martin, F.,... Frey-Klett, P. (2015). Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria. Microbial Ecology, 69(1), 146-159. https://doi.org/10.1007/s00248-014-0445-y
Robroek, B. J. M., Jassey, V. E. J., Kox, M. A. R., Berendsen, R. L., Mills, R. T. E., Cécillon, L.,... Bodelier, P. (2015). Peatland vascular plant functional types affect methane dynamics by altering microbial community structure. Journal of Ecology, 103(4), 925-934. https://doi.org/10.1111/1365-2745.12413
Steenbergh, A., Bodelier, P., Hoogveld, H. L., Slomp, C. P., & Laanbroek, H. J. (2015). Phylogenetic characterization of phosphatase-expressing bacterial communities in Baltic Sea sediments. Microbes and Environments, 30(2), 192-195. [ME14074]. https://doi.org/10.1264/jsme2.ME14074
Balk, M., Keuskamp, J. A., & Laanbroek, H. J. (2015). Potential activity, size and structure of sulfate-reducing microbial communities in an exposed, grazed and a sheltered, non-grazed mangrove stands at the Red Sea coast. Frontiers in Microbiology, 6, [01478]. https://doi.org/10.3389/fmicb.2015.01478
Jeon, J-S., Kim, J. H., Park, C. L., & Kim, C. Y. (2015). Preparative Isolation of Polar Antioxidant Constituents from Abies koreana Using Centrifugal Partition Chromatography Guided by DPPH center dot-HPLC Experiment. JOURNAL OF LIQUID CHROMATOGRAPHY & RELATED TECHNOLOGIES, 38(18), 1681-1686. https://doi.org/10.1080/10826076.2015.1091010
Park, Y-S., Dutta, S., Ann, M., Raaijmakers, J. M., & Park, K. (2015). Promotion of plant growth by Pseudomonas fluorescens strain SS101 via novel volatile organic compounds. Biochemical and Biophysical Research Communications, 461(2), 361-365. https://doi.org/10.1016/j.bbrc.2015.04.039
Collet, S., Reim, A., Ho, A., & Frenzel, P. (2015). Recovery of paddy soil methanotrophs from long term drought. Soil Biology & Biochemistry, 88, 69-72. https://doi.org/10.1016/j.soilbio.2015.04.016
Yan, Y., Kuramae, E. E., Klinkhamer, P. G. L., & Van Veen, J. A. (2015). Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems revisited. Applied and Environmental Microbiology, 81(13), 4246-4252. https://doi.org/10.1128/AEM.00958-15
Zhang, Q., Tang, F-Y., Zhou, Y-J., Xu, J., Chen, H., Wang, M-J., & Laanbroek, H. J. (2015). Shifts in the pelagic ammonia-oxidizing microbial communities along the eutrophic estuary of Yong River in Ningbo City, China. Frontiers in Microbiology, 6, [1180]. https://doi.org/10.3389/fmicb.2015.01180
Keuskamp, J. A., Feller, I. C., Laanbroek, H. J., Verhoeven, J. T. A., & Hefting, M. M. (2015). Short- and long-term effects of nutrient enrichment on microbial exoenzyme activity in mangrove peat. Soil Biology & Biochemistry, 81(0), 38-47. https://doi.org/10.1016/j.soilbio.2014.11.003
Abrudan, M. I., Smakman, F., Grimbergen, A. J., Westhoff, S., Miller, E. L., van Wezel, G. P., & Rozen, D. E. (2015). Socially mediated induction and suppression of antibiosis during bacterial coexistence. Proceedings of the National Academy of Sciences of the United States of America, 112(5), 11054-11059. https://doi.org/10.1073/pnas.1504076112
Mendes, L. M., Tsai, S. M., Navarrete, A. A., De Hollander, M., Van Veen, J. A., & Kuramae, E. E. (2015). Soil-borne microbiome: linking diversity to function. Microbial Ecology, 70(1), 255-265. https://doi.org/10.1007/s00248-014-0559-2
Thomson, B. C., Tisserant, E., Plassart, P., Uroz, S., Griffiths, R. I., Hannula, S. E.,... Lemanceau, P. (2015). Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biology & Biochemistry, 88(September). https://doi.org/10.1016/j.soilbio.2015.06.012
Navarrete, A. A., Tsai, S. M., Mendes, L. W., Faust, K., De Hollander, M., Cassman, N.,... Kuramae, E. E. (2015). Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology, 24(10), 2433-2448. https://doi.org/10.1111/mec.13172
Van Agtmaal, M. (2015). Suppression of soil-borne plant pathogens (PhD Thesis). Wageningen University.
Bodelier, P. L. E. (2015). Sustainability: Bypassing the methane cycle: News & Views. Nature, 523(7562), 534-535. https://doi.org/10.1038/nature14633
Czajkowski, R., Ozymko, Z., Siwinska, J., Ossowicki, A., de Jager, V., Narajczyk, M., & Łojkowska, E. (2015). The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences. Standards in Genomic Sciences, 10, [68]. https://doi.org/10.1186/s40793-015-0068-z
Kip, D. J., & Van Veen, J. A. (2015). The dual role of microbes in corrosion. ISME Journal, 9, 542-551. https://doi.org/10.1038/ismej.2014.169
Reis, M. D. P., Ávila, M., Keijzer, R. M., Barbosa, F. A. R., Chartone-Souza, E., Nascimento, A., & Laanbroek, R. H. J. (2015). The effect of human settlement on the abundance and community structure of ammonia oxidizers in tropical stream sediments. Frontiers in Microbiology, 6, [00898 ]. https://doi.org/10.3389/fmicb.2015.00898
Tyc, O., Wolf, A., & Garbeva, P. (2015). The effect of phylogenetically different bacteria on the fitness of Pseudomonas fluorescens in sand microcosms. PLoS One, 10(3), [e0119838]. https://doi.org/10.1371/journal.pone.0119838
Bonnichsen, L., Svenningsen, N. B., Rybtke, M., de Bruijn, I., Raaijmakers, J. M., Tolker-Nielsen, T., & Nybroe, O. (2015). The lipopeptide biosurfactant viscosin enhances dispersal of Pseudomonas fluorescens SBW25 biofilms. Microbiology, 161(12), 2289-2297. https://doi.org/10.1099/mic.0.000191
Raaijmakers, J. (2015). The minimal rhizosphere microbiome. In B. Lugtenberg [Ed.], Principles of Plant-Microbe Interactions (pp. 411-419). (Microbes for sustainable agriculture). Springer. https://doi.org/10.1007/978-3-319-08575-3_43
Zachow, C., Jahanshah, G., de Bruijn, I., Song, C., Ianni, F., Pataj, Z.,... Raaijmakers, J. M. (2015). The novel lipopeptide Poaeamide of the endophyte Pseudomonas poae RE*1-1-14 is involved in pathogen suppression and root colonization. Molecular Plant-Microbe Interactions, 28(7), 800-810. https://doi.org/10.1094/MPMI-12-14-0406-R
Song, C., van der Voort, M., van de Mortel, J., Hassan, K., Elbourne, L. D. H., Paulsen, I. T.,... Raaijmakers, J. (2015). The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis. Microbial Biotechnology, 8(2), 296-310. https://doi.org/10.1111/1751-7915.12190
Ho, A., Reim, A., Kim, S. Y., Meima-Franke, M., Termorshuizen, A. J., De Boer, W.,... Bodelier, P. L. E. (2015). Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application. Global Change Biology, 21(10), 3864-3879. https://doi.org/10.1111/gcb.12974
Navarrete, A. A., Soares, T., Rosetto, R., Van Veen, J. A., Tsai, S. M., & Kuramae, E. E. (2015). Verrucomicrobial community structure and size as indicators for changes in chemical factors linked to soil fertility. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 108(3), 741-752. https://doi.org/10.1007/s10482-015-0530-3
Schmidt, R., Cordovez, V., De Boer, W., Raaijmakers, J., & Garbeva, P. (2015). Volatile affairs in microbial interactions. ISME Journal, 9, 2329-2335. https://doi.org/10.1038/ismej.2015.42
Tyc, O., Zweers, H., De Boer, W., & Garbeva, P. V. (2015). Volatiles in inter-specific bacterial interactions. Frontiers in Microbiology, 6, [2015.01412]. https://doi.org/10.3389/fmicb.2015.01412

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